Array 1 58694-57584 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGKRF010000002.1 Chromobacterium violaceum strain CGB1 NODE_2_length_113713_cov_83.907188, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 58693 28 100.0 32 ............................ AGTAGCCGCAGAGACGCCGGCCTTGGCTTGCA 58633 28 100.0 32 ............................ AAACCGGCGGCGCGGCCGGTGATCGCTGTCAC 58573 28 100.0 32 ............................ AAGGCCATGTCGCCGGTGTCGGCCAGCTGGTT 58513 28 100.0 32 ............................ ATCTGCGCCTGGCCGGCGTGACGGTCGAGAAC 58453 28 100.0 32 ............................ TTCATCGAGGCATCCAGCCCGAGCCGCATCTA 58393 28 100.0 32 ............................ ATGAACGGATCGGAACCATCCGGATCAGAGGC 58333 28 100.0 32 ............................ ATGTTCGTCACCGGTCGCGAACAATGGGTTTT 58273 28 100.0 33 ............................ CGGTCGAAGTCCTTCATGGCTTGTCTCCTGGCT 58212 28 100.0 32 ............................ ACGGTACCCAGCTGGCCTTGCGTGCCACCAGC 58152 28 100.0 32 ............................ AACGTGCTACGAGCCGATGGATCAAACGCCAG 58092 28 100.0 32 ............................ TCGAACGTGGCGGACTGCACCGGCCAGGCCTC 58032 28 100.0 33 ............................ ACACGACTGGCCGTCGGCCGCGCGATCCTCGGT 57971 28 100.0 32 ............................ GCGAACCCAGTCCTGCAGCTCGCCGAATCGAT 57911 28 100.0 32 ............................ CATGTCTTCGTCGTCGCACCAACTGAAACATT 57851 28 100.0 32 ............................ CTCCTGATGCAGATAGGTGTCCGAACCGCGCA 57791 28 100.0 32 ............................ TTCGACTGCGGCGCGGCGGCGAGCAGGGCTTG 57731 28 96.4 32 ..............G............. ATCAGGACGCTGGTCGGCGCCATGGAGCGCGA 57671 28 100.0 32 ............................ AACTTGATCGGATCAGCACGCACACCCAACTG 57611 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 19 28 99.8 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : CGTTGGCTCAGTGGTTTCGCCGACCACGCTATCGTCGGCGACATCCGCCCCGTCCCCGCCGGCGCAAGCGCGGTCAGCGTGCGCCGCCGCCAGGCAAAGAGCAGCCCCGCGCGCGCGCGCGACAGGCTGATGCGCCGCCAGGGCATCAGCGCGGAAGAAGCGCGCCGGCGGATACCGGACGAAGCGGCGCAGCGGCTGAACCTGCCCTACCTCACCGTAGACAGCGCCAGCACCGGCCAATGCTTCCGGCTGTTCGTCGAGCAACAGGCCGCGCCAAGCATCGCCGCGGGCAGCTTCAATGCCTACGGCCTCAGCGCCGCCGCCGCCCTGCCGGCTTGGTAGCCCGAAAGGGTCGCGGCCAGGACCGCGACCCTTTTCTCTCCCGCCACACCTCTACCTTTTAAAATCAGAGACTTAACATCATGCCGGCAAAAAGGGTTTTGCCAGCAGAAATGGCTGACAGCCTTGCCGAACAAGGCTGATGGGCAATAAGATCTCTA # Right flank : GTAGTACGCACGTCCATCATTCCGGAGCATTACGCGCTGCGCCTGGACACCTGGATCACCATGCACGAGGACCTACGGCACAATCCCGCCTGCAAGGCGGTGTTCAGCGCGCTGGTGGGAGGCATGCGGCGGCATGCCGGGGATGTGTCCTCCGGCGGCTGTCCGCCATGAAACAAGCCGTCCCGGCATTGACCCGGAACGGCTTCTTCGCAGCCGGCCGCCCTTACTTGGGCGCTTTCGCCTGCGGCAGCCGCTGCAGCAGCGCGAAGGTCATGTTCTGCTCGCGCGGGCGGTTGCCGGTCCACAGCACCTGCCAGCCTGGCTCGGCCACGCCCTCCTCGCTGCTCCGCACCACCAGCCAGTAATCGCACGGCGGCGTCTCCCCGGATGGGAAGGACAGCAGGTCGATGCCGGCGTAGTAGCGCCAGCTGATCATGGCCAGGCTGTTGCGGTTTTCCGTCGCGATGCAGGTGGCGGTGGCAGGCAGCTTGCGCAGCATG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3550-3155 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGKRF010000027.1 Chromobacterium violaceum strain CGB1 NODE_28_length_83690_cov_85.314384, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3549 29 100.0 32 ............................. GTCTTGCAAGACATGGCTTCGGTGTTTTGCGG 3488 29 100.0 32 ............................. ATGTCAATTAGCACATGATGTCAATTGGCACA 3427 29 100.0 32 ............................. TCTATCGGATTTAATGTGGAACTTGCTTTGCA 3366 29 89.7 32 ...........GCC............... AATTCAAAATTGCTGTTAGCGGTTGGGTTCAT 3305 29 89.7 32 ...........GCC............... GGTCGCCTAGCACAGCTGGAGATGGCAGAGCA 3244 29 86.2 32 ...........GCC..............T ACAGCGAGCTCCGCGCCAGGGCCGTCCGCAAG 3183 29 72.4 0 ...........GCC......A...TG.TC | ========== ====== ====== ====== ============================= ================================ ================== 7 29 91.1 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : CCTGCTGGCGCAATGGCTGTACAACGTGCCGCCGCTGTTCCACCTGTCCGCCGCCAGCCTCAAGGCCCGCCTGCCGCAGCTGCAATGCGCCGACCGCGCCTTCCGCCCCTTGCACGAGCAACTGGCCACCCAGGCGCTCACCGGCTTTGCCTGGTTGAACGCCGAGCATACGCTGCAGCAAACCCGCTTTGCCGACGGCAGCCGGCTCACCGCCAACTTCGGCCCCGCGCCGGTCCGCTACGATAAGCAAACCCTGCCGCCGCAAAGCCTGCTGGCCGAGCTGGCCGGCCAGCCGCCCAGGCTGCTGCCAGTGGCGGATTGCGCAGGCAAGTAAGCGGCGGCGATAATGCCGATGTCGTTTTGCCGGTCATGGCGCGGCGGTTTGCCATGGCCGGCGAGCGGCATTGCCGAGCGATCGAGATGGTGATTTTTTGAGCGGAAAAATCGGTAGATTTTTGGGGTGGGTTTTTATCTTTAAAAATCAGCATCTTGAAATTGGT # Right flank : CTGCCCGTCTATCGCTTGCTTAATCCGCGGCCGTCGCGTTGCCCGATGCGCTTGCGATCGACGCGCCGTGGCTTGCCGTCCGAGGAGGGCGCTTCCTATGCTGCAAGAATCGATGTTAGAGGAATCGCCATGCAGCAGTTAAGAGTGAGTGTTCTGGTTGCCGCGCTGTTTCTCGTCGTCGCCGTGGTGTCCAAGACGCTGGCCAGCTCCGTCACGGAGACCGTGCCGGTGTGGCTGGGCAGCGGGGTGACTTTTTCCGCGTTGCTGATTTCTCCGCGCTGGCGCTGGCCGGCCATTCTTGCCGGCGTGTGGCTGGCGTCGGCGATATGGGGGATGTCCGCGCATGGCCTGGGGCTGGCCGGCGCGGCGGCGTTCGCGGGGATAGAGGTGGTCAGCGGAGCCGTCGGCTGCTGGGTGGCCGGACTGGGGCGCAACGATCCGGATTCCCCGATCGGCATGGCCTTGCTTCTTTGCGGCGCGGCGCTGGCGTCCTGCCTGGG # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : GTGTTCCCCACATGCGTGGGGATGAACC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //