Array 1 481066-483081 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARUM010000003.1 Listeria innocua strain FSL L7-1059 NODE_3_length_488454_cov_29.419270, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 481066 36 100.0 30 .................................... AATAACATCAGCTAAGTAACCTAAGTCAAC 481132 36 100.0 30 .................................... TAATTATGATGAAAACACCAATTACTTTCT 481198 36 100.0 30 .................................... CGGATGTAACGGCGCAACTGATCATGGTAA 481264 36 100.0 30 .................................... TATAAACTTATTTGAAAATAACAAATCTGC 481330 36 100.0 30 .................................... TTAAAAGAATTGGGATTGATCCAAGTTGAA 481396 36 100.0 30 .................................... TGCGGCTTTTGGGATAATTATTGGGATTGT 481462 36 100.0 30 .................................... TTTCGCTGAATTAGACCTGTTAGGAAAAAG 481528 36 100.0 30 .................................... GAATGCTTGGGGATTTGATGGAATGGATGA 481594 36 100.0 30 .................................... GCGGTTGTTATACTACACAGGCGCGCGTAT 481660 36 100.0 30 .................................... ATTAAATCTTTTTAAGGAGGCGCAAAATAG 481726 36 100.0 30 .................................... AAACAATCCTAAGTTCATCGCCTTTTGCGA 481792 36 100.0 30 .................................... TGCTATTGCACGAACTTATAATGTTAGTAT 481858 36 100.0 30 .................................... GCATACTTGCTCTATTTATGTTACATATAT 481924 36 100.0 30 .................................... TAGTAATAACCAATCAATCAAATTATTAAG 481990 36 100.0 30 .................................... AAATACACAAATTTGAATTCAATATTGATA 482056 36 100.0 30 .................................... CTTATAATGGCGTGTTATGGCGTGTTTACA 482122 36 100.0 30 .................................... CCTGTCAAAATAAGCAGTTACGAGCTGTTA 482188 36 100.0 30 .................................... ATTTACTTTGTCGTTATTAACTTTACTTAT 482254 36 100.0 30 .................................... CATGTGTGTTCGAGTGAAGCACTGTTAAAG 482320 36 100.0 30 .................................... AATATTTCGAAAGTCAAAATAGACTAGTTA 482386 36 100.0 30 .................................... ACCGTCAAGCGTGGTGCTTACAAAATGTAG 482452 36 100.0 30 .................................... ACACCATGCGTCACTCGCAATATCAGACGA 482518 36 100.0 30 .................................... TAGCTGTCCATAAATAAAGACCCTCCGATT 482584 36 100.0 30 .................................... TTCTCGGTTATCTATCTTTACACGCGTTCC 482650 36 100.0 30 .................................... TTGAAACTTCGGACTTAAAATGGGTTGAGG 482716 36 100.0 30 .................................... TCATCTATAGTCATAGTCACCCCGTCTTCG 482782 36 100.0 31 .................................... GCTAAACGTCAAAACGGTTGGAAAGTGATCA 482849 36 100.0 30 .................................... GAAAGGCTGGGGTAGTATGTACGAGTTTCA 482915 36 100.0 30 .................................... ATGAAGCTATGACACAAGCATTCTTTGATG 482981 36 94.4 30 ............A.................A..... AAAATAGAAAATATTTGTAATAGTGGTGTA 483047 35 88.9 0 ....................C....A....-...C. | ========== ====== ====== ====== ==================================== =============================== ================== 31 36 99.5 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TTGATAAGCTGACTGCGACGATTAGTGAGCTGATTGGTTATGAGCTTCTGGAGCATGAACTGGATTTAGAGGAAGATGAAATTACGGTTATTGAATTATTCAAAGCTTTGGGTATCAAGATAGAGACAAAAAGTGATACCATTTTTGAAAAATTAATTGAAATAGTACAAGTCTATAAATACTTATCAAAGAAAAAATTGTTGGTTTTTATTAACGTATGTGCCTATTTAACAGAAGATGAGTTACAAGAGCTAAGGCGCTATATCTCGTTAAACCAAGTAAAAGTTTTATTTGTTGAACCTCGAAAAGCAGAAGGATTTTCGCAGGTTATTCTAGATTCAGATTATTTTTTACAAGTGGAAAAAGGAATGTAGAGTTCAAATGATCTTTGAAAACTAAATAAATTTTATGTGAACCATAAAATAAGCATTCAAAATTGAAATCTTGCTATGGATAAGTGGCGCGATTACGAAATCTAGGAGAATAAAAAATTCTACGAG # Right flank : CCACCTCTCAATCCACTCCAGCTAGAAAAAGTTACACCATTATGAAAGAAGGACTCAACACATGACACAATACCACTACCTCGCTTCAAAAGCAGCACTAAAAACTACGACACACGAAAATAAGACAAATTTTATATATCAAAACGACTTAGACTTCCTGAGCTTGAATTTTGAAGAAAATATTGATGAGCGTACAAATGAAAAATTTTCCTACTCCAAACATTTTAACCCAACCTGCAATTTCCAAGTCGCTATAAGTGAAGGTAAATTACCGTTAAAAGGTGAAGAGCAAAATAATGATTATGAATCTAAAAGTTTAAAAATACTACACGATTATATTATAAAAGCTAGTAAAGAAAGCGATACCCTTGAACTATACACTTCATGGAACGGCGAAGAAAATTTCCCTCTGACGAATAAAACAGAATTAACCATAGAAAATTTAACGCCAGAAAAGTTGATTTTAAGAGACAGAGAACTATTAATAATTAAAAATAAGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 179563-178303 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARUM010000004.1 Listeria innocua strain FSL L7-1059 NODE_4_length_462588_cov_25.543209, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 179562 29 96.6 37 A............................ TTCAATCGTAACGCTTGGCATTGCGGAGATGGTGGAA 179496 29 96.6 36 A............................ TTTTCTCGCGACTTCAAGAACTGAACTCAGTGCATA 179431 29 96.6 34 A............................ AATCCAAATTGAATATCGCAATCAAATTCTTTTA 179368 29 96.6 35 A............................ ATAATATGAGGTGAGTTCAAGAAGGAGGTAACTAT 179304 29 96.6 36 A............................ CCTTTTTGGTATTTATTTGTGAGTGACTTCTCAGCA 179239 29 96.6 35 A............................ ATTGAAACGCTTATTAAGATGAAATACGGCTACGA 179175 29 100.0 36 ............................. CAAATTTGCTACGAAGGCGTCACCGATAAAGGCTGG 179110 29 100.0 37 ............................. AATTGGGTATATAGCGATGCTGTAAAGGCATTTTCAG 179044 29 100.0 37 ............................. AAAACCGCATGGGGAATCGATGGTAAATTTGTTGCCG 178978 29 100.0 37 ............................. TAGAATCACGTCGGAACGTGTTGATTAAGGATGTTGT 178912 29 100.0 35 ............................. AAGATAAAGCGATTTAACTTCGTGGTCTTTTTTGC 178848 29 100.0 36 ............................. AATGACCCGAGAAGCAAGTTAAACACTTGCGCGGAT 178783 29 100.0 36 ............................. TAGTTCGTAGTTCTCTTTTTTCATCGGTCGTTAAAA 178718 29 100.0 38 ............................. TCTTTAATTTTGAGCTGTCCCAAGTATACGTTTGTGTT 178651 29 100.0 34 ............................. CAGATTGAAGCACTTGGCTTGAGTTTTGCAGATG 178588 29 100.0 35 ............................. TTTACAATAGTACTTGTAACTTCTCTAGTACTAAT 178524 29 96.6 35 ............A................ AACTCTAACCAACCGTTTTTAGCCTTTTTTACCAT 178460 29 96.6 37 ............A................ TAAGCCCATCCGCTGTTGTCAATGCGCTTGCCTCTAA 178394 29 100.0 34 ............................. ATGCTTAGAAAGCCATCGCCGTAAAGTCGTTTAT 178331 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 20 29 98.6 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGGTATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATAAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGCGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAATTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CCTAATACACCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCTGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCCCCGCCAAACAGCGCCGCCACAACCACACAGCTCAAAAAGAAAATCTGCACAGTTTCAGCAAATCCTGCTCCCGCGAAAAATAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCGAATAGCGTCTGAACTTTCTTATTCGCAAGTAGTTCCTTCTCGACACCAAATGTCTTAGATGCGAGGTTGGTATTAGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATAGAGCTTGAAACGTTGACTTATTGGCGAAATCTCCGTAATATCAAACGTAGACTACTTAATT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:85.71%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 194120-193636 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARUM010000004.1 Listeria innocua strain FSL L7-1059 NODE_4_length_462588_cov_25.543209, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 194119 29 100.0 35 ............................. TCTTTTCTACTTTCTTACAAAACGCTTTTAACTTT 194055 29 100.0 37 ............................. TCAGCTAGGTAGCGTGCATCTGGACGTTGTAAACCAA 193989 29 100.0 37 ............................. CTCCATATTTTTTAGCTCGATTAGTAAATTGTTCAAA 193923 29 93.1 36 ..............A...G.......... GATTTAAAGTTAGATATAAATAATGTGATTTTAGTT 193858 29 93.1 36 ..........A.......G.......... GAAACACTTGTTTACGGTGATTACACGTTAGTAGAA 193793 29 93.1 36 ..............A...G.......... ATTCCCGACTTATTTAAAAGTAATACTTGTTGCATC 193728 29 89.7 35 ..............AC..G.......... TTGATTTTTCGAATATCTCGTAATGTCTCACTTAT 193664 29 86.2 0 ......A........CA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 8 29 94.4 36 GTTTTAGTTACTTATTGTAAAATGTAAAT # Left flank : GTGTACGTGCCACAACTTCAGCTGACATTTTACTTGAAAAAGGGGCAGTAGAAGTAATCGCGTGCGCAACCCATTCAGTCATGGCTGGAGACGCGACTGAACGTTTGCAAAACTCAAGAATCAAAGAAGTTATTACATCCGACTCTATCGACCTTCCAGAAGAAAAACAATTCGAAAAACTAACCACGATCTCCATTGGACGAATCTTAGGCCGAGCAATCGAAGGCGTACAAGAAAACCGTTCATTGCATCCGTTGTTTTAAAGAATAAGTAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTTGAGTAGCGTGAAAAACACTGGGAATCGACAGAAATTTGTAAGTGGCTGGGGGAAGATGTGCTTGGTGATATTTGCTTGGGAAAATCTTCCGGATAAGGGGAGATTTTAGATGTTTTTTGTTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATTGGAGTAAGAAGAAAAGTTAGCGG # Right flank : ACCCTTCATATACAACTCCACCACCATCCATCAAACAAAAAAACGTGACTGCCAAACTCGCAGTCACGTTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTATATTTGCCGTAGCCCATGCTGATAATTGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTATATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATGGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTGTTTTTCACTA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTAAAATGTAAAT # Alternate repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.40,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //