Array 1 149344-147995 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHHB01000038.1 Acinetobacter baumannii strain MRSN1196 MRSN1196_contig00038, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 149343 28 100.0 32 ............................ TGGAACTGTTGCAGGTTATTGGACTACTTTTA 149283 28 100.0 32 ............................ ATGTATTTCAACATCTTCAACAGAAAGCTGAA 149223 28 100.0 32 ............................ GTGTACCCTGTTGTGAGAACGCATAATATTTA 149163 28 100.0 32 ............................ TGATCAAATCGTGGGGCTGTCCAGTACTGCTT 149103 28 100.0 32 ............................ TTAGTCATATTATAAGTAACTGTAGAATTATT 149043 28 100.0 32 ............................ TGGCTGACCTGTAATGAGTTTAATTGGCATTA 148983 28 100.0 32 ............................ AAGCATTTCAGTTGCACCAAGATGAATACTTT 148923 28 100.0 32 ............................ ACGCTTAAAAAAGCGTTCCCCAAAGCCAGTGG 148863 28 100.0 33 ............................ CTATGGGGGAGAAAATTATATTAGCTAAAATAT 148802 28 100.0 32 ............................ TAAACAAAACAAAGTAACGGCTGTAGGTTTTG 148742 28 100.0 32 ............................ AGATCGCAAACGCTGTTAAAGCCGGGGTTTTT 148682 28 100.0 32 ............................ AAAAGTGACCTCAAACGACCGAACCATATGAA 148622 28 100.0 32 ............................ ACAACCAATCAAGGTTAGTGAGAAAGAAGTGT 148562 28 100.0 32 ............................ TTGTTTGTAGTGTAACGGTTAGCTTATATGGT 148502 28 100.0 32 ............................ AGTATCTATATATCCTGATTTACCAAGTATAT 148442 28 100.0 32 ............................ GCAGCCGCATAGCCCGCTTGCAGTTGGTTTAA 148382 28 96.4 32 ............C............... TATATGGCCTATGGAACTATCCATAGGCCTTT 148322 28 100.0 32 ............................ AGCCTAATTGCGCACGTCCTTGTTCAACAAGT 148262 28 100.0 32 ............................ TTGAATTGGCTAAACCTGCATTGATTGCATGT 148202 28 100.0 32 ............................ AAATTGGGTACACCAATCATCTGGCAGGAAAG 148142 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 148082 28 92.9 33 ............CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 148021 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 23 28 98.9 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : GAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 154434-155062 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHHB01000038.1 Acinetobacter baumannii strain MRSN1196 MRSN1196_contig00038, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 154434 29 100.0 31 ............................. ACTACAACTCCTCCTGCAGATACGCCACCTT 154494 29 100.0 31 ............................. TGTGACCACCAGTGGAATCCAGTAAATTATT 154554 29 96.6 31 ............................T TACTAATCCACATTCTTCAGATACATATCTT 154614 29 96.6 31 ............................T CTATAAGTCATGAAATCAATTTCATGGCTTT 154674 29 100.0 31 ............................. AACTGCTTTTTTTGGGCTTCCTTCATACATG 154734 29 96.6 31 ............................T TGTATTTATACGGTTAATAAATCAGTACAAT 154794 29 100.0 31 ............................. TCTTAAGTTCGAATAAACGTACAAATGGGAT 154854 29 100.0 31 ............................. TAACGAGAAGCGTTGCGTAGACTTACAACTC 154914 29 100.0 31 ............................. AGAGCAACTAATTCCCCGGCTGTTACTGGTA 154974 29 100.0 31 ............................. TAAGAAGTGTGCTCATCAATCTGTGCTGAAG 155034 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =============================== ================== 11 29 99.1 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAATTTATTCGTGATGAAGGAAAAAACTCTCAAGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGAATGGGAATTAGTTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCGGACCTAGTTAAAGATGCTTTTGTTATGCCAGTCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAATACCTTATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : AAAAAGGCAGCAATTAAGCTGCCAAATCAGGTTCTTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 49-1336 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHHB01000039.1 Acinetobacter baumannii strain MRSN1196 MRSN1196_contig00039, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 49 28 100.0 32 ............................ ATATGATGAAGACTGAAAACGAGAAGGTTCGC 109 28 100.0 32 ............................ AAGATCTGACCAGCTAAAACATTCTGGTTATC 169 28 100.0 32 ............................ CGAGGATGATGTTGATTATGTCATTAAGAAGT 229 28 100.0 32 ............................ TAGAAGCAGAAAATATCCAACTCATTGCTACT 289 28 100.0 32 ............................ TTGAATGTCATTATCTTCAGTCGCAATGACAT 349 28 100.0 32 ............................ ACGTCCACGGTAGCGGCGCCAAGGCTGCCAAT 409 28 100.0 32 ............................ TGTTTTGCTAATTTATCAATATCGATTTTCAC 469 28 89.3 32 ...AC........C.............. TCTCAACTCATTGATTTTTTCTTCTCTTGCCA 529 28 92.9 32 ...GC....................... ATTTTTATTCCAAGGGCTTTTGCTTCTTGTGA 589 28 89.3 32 ...GC......T................ TTCAAATGATTTAATGAGCTTGTAGCCATTTT 649 28 89.3 32 ...GC.......T............... ACGTCTTCTAATGATGGACTTTAATCCAATAT 709 28 82.1 31 A..GA.......TC.............. ATCTCACTGAAGATATGACCATCACTTTCTT 769 28 85.7 32 CG..G........C.............. TTTATAACCACCAGTTAAAGTATTGACTAAAA 829 28 75.0 32 ...GC.G...A..C.AT........... ACAATCGGGGACGTGGTCAAAAAGATTATCAG 889 28 96.4 32 ....A....................... GTGTTGATGTTGTTGTTCAGATCGTTTTTGGT 949 28 82.1 32 ...GC....T..TC.............. GACATGCGAGCTTTCATTTAAATGTGTCATCA 1009 28 92.9 32 ....G........C.............. ATTAAAGCATTTTCATATGAGCCTTCCTCATT 1069 28 85.7 32 ....A......TGC.............. TTCGGATCAGTCCAGTCATCATTCTCGTCAAT 1129 28 89.3 32 T..G........G............... TATTATTGCGCGACAGAACGTATCAATTAATG 1189 28 85.7 32 ...GC.......CC.............. AGATCTATGCAAGATTTATTGGTCTACATTAG 1249 28 92.9 32 ...TG....................... CAAGCTGATGCTTCCTTATGGTTACAGTCAGG 1309 28 82.1 0 ..CGC...................AT.. | ========== ====== ====== ====== ============================ ================================ ================== 22 28 91.4 32 GTTCTTCATCGCATAGATGATTTAGAAA # Left flank : CATAGATGATTTAGAAAAAAAAAGGCAGCAATTAAGCTGCCAAATCAGG # Right flank : ATTTGAATCTTAAAAGAAAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATTTTGGTGGAGATGGCGGGAGTTGAACAAAAATCCTAAATAATTGATTTTATAATTGCTTTTTCGGCATATAACATGCTGGTATAACTCATGTATAACATTTAATTTTGATTAAGTATGATTAACAACAGTTTCTTTTTTGTTCAAGTCCGACTATAGGAGTTGAACTCATTTTGAAAAATTCTAGGCTCTTCCTACTTTTATTTTAGCTTACTATAAAGGTCAATATAAAAATTATGATAGAAACGCGTTCTCTTTCTCTTAATTTTAGGGCTTACAACTGAGCTGTATGTAACCGAAGTTTCCTCTATTTCTTCCTCAATTAATCCTACAACTTCTAAATCTTTGAAGTCACTAACTAAAAGATTTTCAAATTCCCAATATTTGTTGTAATCAGTGGCATCTTTTGGCAATCCTTCACAAGGTATGGATTGTCCGCGGAGCCT # Questionable array : NO Score: 5.28 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.57%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //