Array 1 2937518-2938987 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054049.1 Yersinia kristensenii strain 2012N-4030 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2937518 28 100.0 32 ............................ GCTCTCAGGTTCATAGTGCAACGTTGCACCGT 2937578 28 100.0 32 ............................ AAAGGGCGGGGGTAATTCAGTGCCTTGGGACC 2937638 28 100.0 32 ............................ AGCAATGACGTGCCGGAACCCAATATTGTTCG 2937698 28 100.0 32 ............................ TTAAGCCTGTTCAAGCGGCGTTAGATAATTTA 2937758 28 100.0 32 ............................ GGCACGACCGGTAATGATTTTGATAACGCATT 2937818 28 100.0 32 ............................ ATTTAGTCATAGCTGCAATTCCCGCTTAGCCA 2937878 28 100.0 32 ............................ AATCGCTGACACAGTGAGAGGCAACCCCGTTT 2937938 28 96.4 32 A........................... GTTTGATGTGTTGTTCTACGCCAAGGCTGGGG 2937998 28 100.0 32 ............................ CTGGCGGCGCATCTGAAACTGGCGCTTATGCA 2938058 28 100.0 32 ............................ ATGACGCCAGTGCGAAGAGCTATACCGAACAT 2938118 28 100.0 32 ............................ GACTTGTGGCTGGTCTGTCCGGAAACCAGTAT 2938178 28 100.0 32 ............................ ACGTGTTCGGGACGCTTTCCTACATATCCAAC 2938238 28 100.0 32 ............................ GTAAACACCCCCGGATTACCGACATCAATCAC 2938298 28 100.0 32 ............................ CGATTGAGCGCAAAGCATCTTCGGCGCTCATG 2938358 28 100.0 32 ............................ TGACTGGTTCCCGCTGGCGCAAAAAGCGAATA 2938418 28 100.0 32 ............................ CATACTCGCCGCTTGAGGTTCAGGTAAGTTCT 2938478 28 100.0 33 ............................ CGATAAGAGCAACAATTTTTTTATTTTTCTTTT 2938539 28 100.0 32 ............................ CAAATCACGACGAGCCATAACCGGGTATGATG 2938599 28 100.0 32 ............................ TAGTTGAGTGAGGGAGAGTCCCGCGCAAATAA 2938659 28 100.0 32 ............................ CGTCAACGAATCAAAGCTCTTGAAGATGCACT 2938719 28 100.0 32 ............................ ATTATCTGAGTAGATATCTTTAGTAAGAATAC 2938779 28 100.0 32 ............................ TTGCGCCGCTCATCAATCTCATAATCATCACG 2938839 28 100.0 32 ............................ CTTGCCGATGGTGCGTTGCTTTAAGGTCTTGA 2938899 28 100.0 32 ............................ GATGGCCAGCGCGTAGAACTGGAACGGTTGAA 2938959 28 85.7 0 .....................AC.TC.. | G [2938981] ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.3 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AATTCCAGTATGCCATTGAGTATGCCATTAATGATTAGGTAGGGTTGTTTTCATTTGTACTGGATTGAGGTGGTTTTTATATAACCTTTTGTTTTATAGTTTAAAATTGAAATGTATTGTTCCGCATTAGAAATATTTTTAGCGGACTCCTCCTCCGCCATCATTTCTCCGTTTCTCCTGCGTATTATCCCTGTTTAATCTCCTGAAATACCTTAATTTTTATCCTGTGATATTTATTCTTTCCGATATAACAAAACGAGCAAAACCCACCCCAAAATAGTGAACTATAACTTTTTCAAACTCCCCTTTTGTTTGTCACATCATCCTCAGCAGAAAAGGCTTCATGACATTTTACCTTAATCTCAACTTGAACCCTTTTTTAGAGTGTTTTTTAACTCGTTGATTTTATATGAAAATCACCAAGGTGATAAAAAAATCATTTTTTATCACTGCGCTTCAATGCACTTTTATTATCAGTAAGTTATCTGTATTGTTCTACT # Right flank : AGATTGAGAGCCAAAACACATTTTGTTACTTACAGTCGGCTTATTACTGTTTTCTATTACCGGCTTTGCCGGTATTGGGTTAGTGTAAATAAATTAATCATATCAATATCGTGCGGACCTCTATCTTGGTAAGACGCGCTCACTTACTGGCAAGATATAATTAACCCGTTAGAACGATTTGGGCATTCTGTCTAAGGAGGTTGCTGGCGATGGACAATTCTATTCATTCCTCTGATCTGAAAACAATTCTGCACTCAAAGCGTTCAAATATTTATTATTTAGAATATTGTCGCGTATTAGTTAACGGCGGGCGGGTTGAATATGTCACTGATGAAGGGAAACAATCTCTTTATTGGAATATCCCCATCGCGAATACCACTGTTATCATGCTGGGGACGGGGACATCTGTGACTCAAGCCGCGATGCGCGAGTTTGCCCGCGCCGGTGTTTTAGTCGGTTTTTGTGGCGGTGGTGGCGCGCCACTTTTTGCGGCGAATGAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2947484-2948531 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054049.1 Yersinia kristensenii strain 2012N-4030 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2947484 28 100.0 32 ............................ AAATGACTGGCAGACACCATTTCAGTTAAAGC 2947544 28 100.0 32 ............................ TCGTAACTATATCCCATACGTTCTAAATATTC 2947604 28 100.0 32 ............................ TTATACGCAAAAGTGCAGAAAGCGCACTACCA 2947664 28 100.0 32 ............................ GCATGGGTTATAGCAACATTGGCTAGCAAGGC 2947724 28 100.0 32 ............................ ATAAAAAGCTGTCGGATGAAATTGGTGTAAAA 2947784 28 100.0 32 ............................ ATTGATACTGAAACATTGGCTATTGTTGTAAA 2947844 28 100.0 32 ............................ CACGAATTAGACAAAGAAAGTGCTTTAATCCG 2947904 28 100.0 32 ............................ GTTTGGCATATGCATCACTCACCCGACTAAGT 2947964 28 100.0 32 ............................ AGTTGGCGCTGGCGCTCCAGGGTGCGGCGACC 2948024 28 100.0 32 ............................ TGCTGATATTTCATATCAAAGCATAGGCGTTT 2948084 28 100.0 32 ............................ CATCTAGGCTATCTGCTTCGCTTGCTAGTGGT 2948144 28 100.0 32 ............................ TTAACATGAAAGAATATAACGGATATGTAAAA 2948204 28 100.0 32 ............................ TGTACCGGTTTCAGCAACAAAATCACTATTTT 2948264 28 100.0 32 ............................ ACAGTTACTTTGACGCGTTGCAATAAGGACAT 2948324 28 100.0 32 ............................ CTCCGTACTGCTGGCATTCGAATCAAGGGAGA 2948384 28 100.0 32 ............................ ATTAACCCGTGCTCAATCAGTGCCGCGTCAGT 2948444 28 100.0 32 ............................ GGAAAGCTAAAGCGCAACATCATCATCGCTAA 2948504 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 18 28 100.0 33 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCGATTTAGCCGAATTGCAGTCTGCGGGCTGGCTGAAAGGTTTGCGGGATTATTGCGAATGCAGTGACATTCTTCCCGTGCCAGCAGCGGTTAAATACCGTGTCGTGCGCCGCGTGCAGGTGAAAAGTAATGCGCAGCGGCTACGCCGTCGGTCTGTCAGTAAAGGCTGGTTGACGGAAGAAGAGGCACTATTGCGGATCCCAGATAATCGTGAGCAGCACTGTCATTTACCTTTTTTACGCTTAAAAAGCCTATCCAGCGAGCAAAGCTTCTTGTTATTTATTGATCAAGGAGAGTTACAGCAAGCACCGGTTAGCGGAACCTTCAGTGCTTACGGTTTAAGTGCCATAGCCACTGTCCCTTGGTTTTAACCCTCTTTTTTCGGCCAACTCTAACTCATTGATTTTATATTGAGTTGGCCGAGAATATTAAAAAATCCTTTTTTATGATTTTGGTGGGTTATTTGATAATAATCAGTAAGTTATTAATATTTCGTTACT # Right flank : ATCTATCCGACGTCTTATTTCTCCTTTTTTGTTGAATACCTCTAAAGAGGTATATATTTGATTTTATGTAAAAATTGTTTGGTGCTGAGTTTTTTTTGAGCTGGTTCATAAAATCAAATACCCACACAAAGAATGTTTGATCTAAAACAAGCATTGTTACTACAACAAATCATTTACTGAAAATCCTCCTTACTATCTCCATAACCCCACTGGGCGAAATCTGTCATGGGTATCTCTGGGTGAGTGTTTGACATCCTGGTGCGGGTTTAAAAATAAAAAATGACTGCCTGGTGTCAGCACCGGCGGCGTCCGGTATGGAAAAACACACTGGAGTATCTATTGTGAGCAAATTTATAAGACAAATGTCGGTAGGGATATTGGCGCTTTTGGTCATCGGAGGGGTGTTTTCTGTGTCGGCAGCACCTACGCCGCCGATTGAGGCCCGCAATGATAAGTTCGCGCAGCAGCATGTGGATCAATTCACCTCTTGGTTGAAAACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //