Array 1 28975-30483 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUDP01000003.1 Riemerella anatipestifer strain RCAD0123 ZB100002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 28975 47 100.0 30 ............................................... ACTCAATAGTCTGTGTCCAAAGGGTTTGGT 29052 47 100.0 29 ............................................... CATAAACTGAAGAAGATTTTCGGCAACTG 29128 47 100.0 30 ............................................... TATTAAGAATTTTTGAGTATCGCTGATACA 29205 47 100.0 30 ............................................... GCTAGTACGCATGTTGTTACGGTTCCAGTT 29282 47 100.0 30 ............................................... TAATATTATGAACATTTGTAAAATCCTTAA 29359 47 100.0 30 ............................................... TCAACTATTCAGCAAATGTAGACGATACAG 29436 47 100.0 30 ............................................... GTATAAAAGACCAAGTGGAGATTACCCATA 29513 47 100.0 30 ............................................... GTATAAAAGACCAAGTGGAGATTACCCATA 29590 47 100.0 30 ............................................... AATTAGTTAATTCTCTGGGCGAGGTAGTTT 29667 47 100.0 30 ............................................... TTTCGGTTGCTATCCGAAACGATTCGGATC 29744 47 100.0 30 ............................................... GAGGTGTTGTCATATCTCAATCTCGTCTAT 29821 47 100.0 30 ............................................... TACTTCGTTTATTAGTTTTATTGCAATGTT 29898 47 100.0 30 ............................................... TAGATACATCTCTTTATCTTCGTGTAAAAT 29975 47 95.7 30 ........T...............G...................... GTCTTTGAGGTAAGGTTTTGTCAAATCCCA 30052 47 95.7 30 ........T...............G...................... TAATGGAGATTATAATATCCAGATACAAAC 30129 47 95.7 30 ........T...............G...................... TCTATCGAAGTGTTTAAAAACACTTGATTT 30206 47 95.7 30 ........T...............G...................... GATATAGTATCAGATGAACCGACAACGGAC 30283 47 95.7 30 ........T...............G...................... TGATTGACTCTATTTTCTCCTGTGCAGATA 30360 47 95.7 30 ........T...............G...................... TTATTAAAAGTTTTCCGATACTTCCTATGT 30437 47 93.6 0 ........................G..................T..T | ========== ====== ====== ====== =============================================== ============================== ================== 20 47 98.4 30 GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Left flank : CTGTTTATAAATGTTATACTGGAGAAAAAAGACAAATATCTGTGCCTGAGTTTTATGAAGTTTAATCGTTTTAATGCTTATAGAGTTATGTGGGTTATGGTGTTATATGATTTACCAACAGAAACCAAAGCGATGAGAAAAGCAGCTCAACTTTTTAGAAAACGCTTGGAAGATGATGGGTTTAGTCTTTTCCAATTTTCCATTTATATACGGCATTGTCCTAGTCGAGAAAATGCGGAAGTACACATCAAAAGAGTAAAATCAATACTTCCCAAGCATGGCAAGGTAGCTATAATGAGCATTACAGATAAACAGTTTGGAGATATTGAAATTTTCTTTGCGAGAGCTAAAGAGGAACCAAAACCAACCTATCAGCAATTAGAACTTTTTTAGGAATAGAAAAAGACTTTACATCAAACAAAAATAGAGAAGAAATAGTAAAAAATCTAATCCTATAAAAACGCAAAACCCATTGAAAAACAATGGGTTTATTTTTTGAG # Right flank : TATTACTGTTTGTTATTGGTTTTATTTTTTAAGATATAAAACACGCTTCCAATTATGTAAACCGACACAATTAAATTAGATACTAAATTAAAAATCCCTATACTCCCAAAATCCATTACAATGTAGTAGGAATTATAAATGATATAAAAAATAGAAAATACAATAAGTATAAAATATAGCATAGAGTTTTTCATTTTTATAAATTGCAAGCTGTTACAAAGATAAAAAAAGAGCTACCTCCAAGAGGTAGCTCTACGTTTTTAAATTGAGATATTCAGTCTACTTTAAAGTAATATTGTCTATTTGTACAGTAGTAGTTACAGTAGTGTTACCTGCATATTCAAAAAAGATATAACCTTTTCCTGTAGCAGGAATTGCAAATTCGCCACTATCTACCCAATCGGCAGCATAGCCATTAGTATTTTCTTTTGAAAGAGTAAACTTAGAAGTAATATCTATTAGGTCGGTTTTATTTACAACTCCGCCAGGTGTATATTTCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Alternate repeat : GTTGCGAATTATCACAAAGATAGTGAAAATTGAAAGCAATTCACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,4.87 Confidence: LOW] # Array family : II-C [Matched known repeat from this family], // Array 1 196744-195866 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUDP01000004.1 Riemerella anatipestifer strain RCAD0123 ZB100003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================= ================== 196743 36 72.2 81 ...................TGCTAT...T..A.G.A CTCCGCTGAAACTACAACAAAGCTGTGAGCTAAAATGAGAGCAGTCCCAACGGAAGGTAGAATTGAATGTTTTCATGATCT 196626 36 97.2 30 ...................G................ CGGCAACAAAAGAAGGAGAAGAACAAAGCA 196560 36 97.2 30 ...................G................ AGCAACATATACGAAAATCCAGAAATCTTA 196494 36 97.2 30 ...................G................ TGTGCTTCCTACAACGAGTAGCGTTCCTTT 196428 36 97.2 30 ...................G................ TTAACTAAGTTACCTAGAAGTATAAATGAA 196362 36 100.0 30 .................................... TCTGCATCTACGAAGGTGATGAGGAAAAGG 196296 36 100.0 30 .................................... CAATAGGACCTATTATATTTACAACAACAG 196230 36 100.0 30 .................................... ATTTTGAAAATATAGAGGCGATAAGCCTTT 196164 36 100.0 30 .................................... ATTCTAAAAGGTACAGAGAATGAAGCTAAA 196098 36 94.4 30 ...................C........A....... TCAACCAATTTAATCTGCAACTCTGAAATG 196032 36 97.2 30 ...................C................ TGATAGGAATATTTCTTATTCTATTTTTTA 195966 36 100.0 29 .................................... TTAGGAGCAAATAAGCTGTATTTATTGGT 195901 36 66.7 0 ...................TGCT.T...T.ATTGTT | ========== ====== ====== ====== ==================================== ================================================================================= ================== 13 36 93.8 34 GTTGTGAATACCCTTCAAAATGAGAGCAGTCCCAAC # Left flank : ACCTAGCAGATGACGGTAAACTAAACGGGTTGTGAGTACCCTTCAAATGTTACGCATTCACGAACTCCGCTGAAAACTTACAACAAAGCTGTGAGCTAAACTGAGAGCAGTCCCAACTTTCTGTGTTTTGTGCTGTAGCCTTAATATGTTGTTAATACCCTTCAAATGCTACGCATTCACGAACTCCGCTGAAACAACAACAAAGCTTGTGAGCTAAACTGAGAGCAGTCCCAACACTCACAACAACTTAAAATACCAAAATAAAGTTGTGAATACCCTTCAAATGTTATGCATTCACGAACTCTGCTGAAAACGACAACAAAGTTGTGAGCTAAACTGAGAGCAGTCCCAACAATCAGACTTAGCAGATACTCGTGAAAAAAGTTGTGAGTACCCTTCAAATGTTACGCATTCACGAACTCCGCTGAAAATACAACGAAGCTGTGAGCTAAAATGAGAGCAGTCCCAACTTGGACGAATAATACGCCATTGTTTAACTC # Right flank : ATGATAGGGTATTGTCTTTTTTGGGTGCTTGTTTTATCTCGATGTTTCAAAGAACGCTTTTCTTTACAACGCTTTTAAATCGCGTTGTTCTATTTTTAGGCATTGCCTAATGCTTTGGCTCAACTTATGATGCAGCACCTTCATTCTGGTAGCCGCCTCTTCGTTTTTTAGTCGGAACTCCGCCTCGGTGCTGTTTTGCTCTGCAAGTAGGAGCTTATGAACGATACTACGGTACTCAAAAAACTTTTTGGTGACTTCCTCAGATAAGAAGAGCCCACAGCCCTCCCCATAAAATAGTTCTGGGAGCTCCCTTAGAAAGGCTTGGGCATTGGCTCGGTTAATATAATGAATTTTATCCTTTTGCCCTTTGGGAACTTCCCATTTTAAGAGGTTTTTGGGGTTGTCTTGGTCGGTCATATACGCCAGCAGACGGTACATCTGCTTATGGGCATGGAGTATATCCTCGTACTTTTGGCGTTCAATGTTGCCCTTAAGCTCTT # Questionable array : NO Score: 5.27 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:-0.29, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATACCCTTCAAAATGAGAGCAGTCCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.16%AT] # Reference repeat match prediction: R [matched GTTGTGAGTACCCTTCAAAATGTGATACTTCCCAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //