Array 1 284284-284650 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMIK01000024.1 Bacillus cytotoxicus strain AFSSA_08CEB44bac, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ============================ ================== 284284 38 100.0 27 ...................................... TATAAATCAGAAGATGAATCCGAAATG 284349 38 100.0 28 ...................................... CAAAAACAAATGAAATTATCGATAGCCG 284415 38 100.0 28 ...................................... AACCACTTATGGAATCTGTAACAATAAC 284481 38 100.0 28 ...................................... GCCAAATTTCAATGTCATCGGAAATAAT 284547 38 94.7 28 ....................................GT GGTGCTTTTGCATCGTAAGACTCGAAGT 284613 38 94.7 0 ....................................AC | ========== ====== ====== ====== ====================================== ============================ ================== 6 38 98.2 28 GCCATAATTCCTCTTTAAATCTTGGTATGATATGATTA # Left flank : AGTCCGGTAATCGTGGAGGAGAGAGAAGATTCCCCCTCGACCTCTCACACCACCGTACGTACGGTTCCGTATACGGCGGTTCAATTAAGTCTGACGAATCATTGAATATCTATTACTCAAACTTTTAAGACCTAGATATCCCCAGTAGGAATTGTCTAGGCTTCTTTTCGTATGCTGTCTGTTTGGCGATACTCAAAAATTGGAGTTTCTTTCTCCTTACCCTTGATAATTTTTATTGTTTCCATATAACCATTCGGAGCCTTCTTCGAATCCACTTGTCTCGTTCTTTACATATGGACGGCGTGTCGCTTAATGCATTATATCCACACCATCCAATTAGATATTTGTAGATGGTCAACCAAATTTGCCCCACCTTTGTCACCGAAAACTGACCCACCTACTCTTCCTTCGTGACTAATCGTACTTTCATTCTGTAGCTATTTCCGTTAATATTAAAAATATGACAGTACTGAACAAATATTTATTATATGCATTTTTAA # Right flank : CATGCACCGAAACCTCTTGATATTCCTCAGTTTCAAGGGGTTTCTTTTTTAAAAAAACGAGTTTAAAAATGCTCTTTTGGTTATTTTCGTGCTAAATTTTTTTCATATTACGTCAAAACAAAAAACACTTGCTAAAATTGCAAGTGTTTTTTGTTAGAAAAAGTCCGTTTTATTTGTTCCTAATTTTTCATCAATGGTTTGAACACCAAGTAAAATATCCATACTTTCAAATTGCTTTTCTGTTACTTTTAATGAACGGATTGCTCCATTTACATTTGGAATGTTTTGTCTAAGTCTTCTCAAATGTTTTTGAGCACCTTCTTCTCCATTACAAACTCTTGTGTACACAGAAAATTGCAGCATTGTGTAACCATCTTTTAATAAAAATTTTCGGAAACGGGTGTAGGCTTTTCTTTCAGCTTTTGTCATCACCGGCAAATCAAAGAAAACAAGTATTCTCATAAATTTACTCATACGTATGTTGCCGTAATGCAATCAGT # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCATAATTCCTCTTTAAATCTTGGTATGATATGATTA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 21790-21106 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMIK01000028.1 Bacillus cytotoxicus strain AFSSA_08CEB44bac, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 21789 29 100.0 39 ............................. TTATTTCTTTTTTTGTTGTATCTATTTTTAGCGAATCAA 21721 29 100.0 36 ............................. CGATATGAACCAAATCAAAAAAGAGTCATGGAAGCG 21656 29 100.0 37 ............................. ACTGATGACAAAAACGTTTTTACAGCTAAAGTTGTTG 21590 29 100.0 35 ............................. CCATCTTCATAGTTACCAGTTGTTGTGATAACAAC 21526 29 100.0 37 ............................. GTCAAACAACGCAAATTATTGACTCTATTGCGGGCAA 21460 29 100.0 37 ............................. AATAGATGTATGTAGGTATTGGTTGGAACAGAACGGG 21394 29 100.0 36 ............................. AAACGCTCTAGTGGATGACCAAAAGGTGGCAGAAGA 21329 29 100.0 35 ............................. ATTCGGAACCAATACGACGTTCTGTGCGAACGCTA 21265 29 100.0 36 ............................. GTTATTTTTTGATAGTCTTCAGCACATACCATTCGC 21200 29 100.0 37 ............................. ACAGCAAAAATTATGATTCACAATGCTTCTATGTGGA 21134 29 93.1 0 ....................A...G.... | ========== ====== ====== ====== ============================= ======================================= ================== 11 29 99.4 37 GTTTTATCTGAACGTAGTGGGATATAAAG # Left flank : TGGTGGTAAAAAAATGTTTGTTATAATTACTTATGATATTGGAGAAAAAAGAGTAGGAAAAGCGTGCAAGAAATTAAAACAGTATTTAACTTGGACGCAAAACTCTGTTTTTGAAGGAGAATTATCTAGGACACAACTCTTAAAATGCTTAGCTGAATTAGATCAGATTATAATATCGAGTGAGGATTCTATTTACTTATATGAAGTAAATAATCCACGTAATATAAAGAAAAAGGTATTTGGTATTGAGAAAAGTTACGAAGAGCTATTTCTCTAAACACGATTTTATAATATATTAGGAGTAGTTTTTTTCTTATTAGTGAGAAGTTTGCAGTGCATCGTTTTTTAGCGAGTAAACTGCCAACCTCTTGTCTGTTAAAGGATGGAGCGTATTTTTGAAAATACTTTTGAAACACGACTCAACATCCGCTGCAAGATTTGGAAGTCTTAATGTAATGTGTTCCTTGATTTAAAAGGGATTATAGTGTTTTTTTATAGGG # Right flank : GCAGTTTTCTTATGGTTAAATAACCCATGGAAACAAAATTAGTCGCCATTTATGCTTATCTGAGCGGTATAGAACCTTTTAAAATAGTGGCTAGTTTTTTAGAAAAGAAAGAAGTTATCGTGAACGAAACTAGCTCCTTACCCGTAATTTCGTAGGTTAATTTGGTTACACTGAATAACTATAAAAAACAAACCAAATCAGAGCTACATTACGAAAGGAGCTAGTTTATTATGAAGGATACCACAAAATACGTAGGTTTAGACGTTTCAAAGGAAAAAATTGCTGTTGCTATCGCGGATGAAGGAAGAGAAGAACCTAGATATTTAGGAATGATCCCTCATACACCTGAATCTCTAAGAAAGCTGATAAAAAAATTAGGTGCCGTTGAACACCTAAAAGCATGCTATGAGGCTGGTTCAACTGGCTATGGGATTTACCGCTTACTTTTCAGCTTAGGAGTAGATTGCGCAGTGATAGCTCCCTAAAAACCTGGAAATCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACGTAGTGGGATATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 31734-31115 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMIK01000028.1 Bacillus cytotoxicus strain AFSSA_08CEB44bac, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 31733 29 100.0 37 ............................. AAAGTCGAATCGTTGTGGGTAGACTGTCCACGACTTG 31667 29 100.0 37 ............................. ATTTTTCGCGAGTTTATTTCACACTTTGAGAAAATAA 31601 29 100.0 37 ............................. CGTCTTGCAGAAGTTAATCCAAGTAAATAATCAACGG 31535 29 100.0 35 ............................. GCGGTGAACTTGTCCAATTCGGAACCAATGCGACG 31471 29 100.0 37 ............................. AGCGTTACCTCTTTACCAGTTTCACGACCACGCTTTT 31405 29 100.0 36 ............................. TATAAACGTGGCGGATTTACGCTACAACATAACATT 31340 29 100.0 36 ............................. TCGGATTTTATAGATTTATTTTTGTTTAATGAGTAC 31275 29 100.0 36 ............................. GTAATTAGCGCAGGCGGAAAAGAATTTGATGAATTA 31210 29 96.6 36 ............................T CCAATGTATTCAATGGTTTTTGGACATTGTTAGAAA 31145 28 93.1 0 ....................-.......A | AGA [31119] ========== ====== ====== ====== ============================= ===================================== ================== 10 29 99.0 36 GTTTTATCTGAACGTAGTGGGATATAAAG # Left flank : CGTTCTTGTGAAAAAGGTAAGAAGAGGAGACGAAGAAGTCGTTATTATGATTCGTTGGGAATCTGAAGAAGCATGGAAAAATTGGGAGACAAGCGAAGAACATTTGGCTGGTCATCGTGCAAATCGCGGAAAACCAAAGCCAGAACATATTTTAAATGCTGAACATGCTGTTTATTATGTGAAAGCAACGAAATCGGCTTATCAGCAATCATAATGTGGATGAAAAGGGGGCGATTTAGCCCTTTTTTTAATGATTAAAGAATTCTTTTCTTAAATGTAGTTTTGTATTATATTAGAAAATAAGAGTGTACCTATACCAATACTCATTTTGCAGCATATCAATTTTTGAAAGAAAGGAGTCAAAACCCTTATGTTTCAAGGGATAGACTTTATTTTTGAAAATGCATATGAAACAAAACTAACAGTGTGCTGCAAAACTTTCAGTGTATTATATAATAAATGTATTGATTTTAAAGAGAATTATGGTGATTTTTTATAGG # Right flank : AACTTCAGATGATAATAGTCCTTCTAGGGCATAGCTATCAACTTTAGAGAAGTGCTTCCCCTAAAAAAAGTATCGGGACACTTTTTTGTAATCTTTGAATGCAATCCTGGATTTTGGGTATATTCAAATAGAACTTCCTATGATATATATTTTATGGCGCTATTTGAAGCCGATTCGCTGATTTTTCTATGTTTTGTTTACTGATAGCTTGAAAGAGGTTGCTAAGTACAAAAAAGTTGCGGTGTATATTTTTTTGATAGATTTGCACCATATAAGCATATTTCAACTTACTCATTTTTTCCTTGTGTCTCTCATAAAGGTCTTTGTAGTTGATAGGTGTAACGCTTGCAAATAAACATAAACGCAAGGAGTATAAATTTATTTTAAATAGAAGTTCTATTTGCTGTCGTAATGAATAAAAAGCATACACTTCTGTGAGAGGATACTGAAAAATGGTGGTTTTGAAAAATAACACGCATTTTATCGAAATGTTAAGGATA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACGTAGTGGGATATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA //