Array 1 41074-42896 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYRN01000009.1 Lacticaseibacillus rhamnosus strain ARJD NODE_9_length_163799_cov_19.1614, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 41074 36 100.0 31 .................................... TTTAGAATACGATTATAAGACAGTAGTTTGG 41141 36 100.0 30 .................................... AGTAAGGTAGCCAAATACAACCATAAGGGT 41207 36 100.0 30 .................................... AACTATATAACACGCTATACACAGAATGGC 41273 36 100.0 30 .................................... TTTAATATGCAGGCGGCGACTGATTTATTT 41339 36 100.0 30 .................................... TGATTTGCGAGATGTCGCGATAAGAAGTCA 41405 36 100.0 30 .................................... GACAACAGACTCCGTCAACATCAGTCTTAA 41471 36 100.0 30 .................................... ATAAACATCGTATGCGAATCGTAACAACGT 41537 36 100.0 30 .................................... AGTTGATTGAGGCGCGGATGTACATTCCTG 41603 36 100.0 30 .................................... CCGTTTTGGTTGCAAAACGAACCGATTACG 41669 36 100.0 30 .................................... AAGGTGTACTGCTTAGCTGACTCCCACGTG 41735 36 100.0 30 .................................... CTCGTGACTTGTCGTGATATGCATACGCGC 41801 36 100.0 30 .................................... GAAAGTTCTTTAAGTTGACCACTCATTTCA 41867 36 100.0 32 .................................... TCAGGGTGCCGGCTACATATACACGACTTTCG 41935 36 100.0 30 .................................... TCTGGAAGAGAGCAATAGTCAATTGAAGCT 42001 36 100.0 30 .................................... AAATGGTTTGAATACCCTTATCCCGCCATT 42067 36 100.0 30 .................................... TAATGACGCTTAACGCTCTCCGGTTGGTCT 42133 36 100.0 30 .................................... AGTCGTGCAAATCCACGTGCGCGCGTTGCA 42199 36 100.0 30 .................................... TTTTATGATGGGCTTGTATTTTCCCAAATA 42265 36 100.0 30 .................................... GGCAATTTTAAAGCCGTGACCGATGCCACG 42331 36 100.0 30 .................................... ATGACGCAGTTGGCGAAACCTTTGCACGTT 42397 36 100.0 30 .................................... TCGCTGACTTTGACCATCAACGGCGCCGAG 42463 36 100.0 30 .................................... GCGTGTTAGTCGCTTGTGTGGCTTACCGTT 42529 36 100.0 30 .................................... GCGGCATCTTCAAAATCAAAACGACGCGCA 42595 36 100.0 30 .................................... GTTGACGCGTTGCGCTGTCGCTGGCCGTTG 42661 36 100.0 30 .................................... AAGCAACATATCAATCAAGCCGAAAAAAAG 42727 36 100.0 30 .................................... TGATGACGAAGTGAGTTTGCCCACCGCTTG 42793 36 100.0 30 .................................... ACTCGGGTATTGACAAAGATCGACGCGGCA 42859 36 86.1 0 .......................AA.C....T...G | C,G [42885,42891] ========== ====== ====== ====== ==================================== ================================ ================== 28 36 99.5 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Left flank : GAGCTGGATTTGGACAAGTTATTTCAACGCTTGATCATCAAAAAGGTAAGCCAATTGATAGAGGATCAGCGGCTGATTGAGTTGATTGAGCAGTCACAACGACTGGCAATGAGCTTATTGAGAGAGCCGTTGTTAAGTGAACTTCCAGTCACAGTCGAACCTGGTGGAAAACTTGAACAAATCATGAAATACTGTAATGTTCATTTTGATGAGGAAGTACTCACGGAGCCTTTCTCGAAAGTTGAAGCGGCAATTCAGACTTTGGCGAAACTTGAGGAGAAACGTCTTGTCATTTTTGCCAACATCAGTCATTATTTAGATGTTGAAAGTCTGAGCAAGCTGTTAGATCAGGTTAAGAACACATCGTTGGAATTACTTCTCATTGAATTTTCAGATGTCGAACGCAGAAAGTTTTTTGAGAAGTGCCAGTATATCTATATTGACAGAGATTTTATGGATAGCCGAGAACTGATTGATTAAGAGGCTGTGTGAAAACACCG # Right flank : GACTCACCTCATAAATGCTATGCAAATCCCAAAAGAAGGCAACAGCAATGTCAAAAGCGAAACTAATCCTTTCGCCAGTATTTTACACTGATCTCAAAGAAATCCGTCACATGTACCAACAGGCGTTCAAATCACTTTACGGCAAATATCAAGATCGGGAAACCAATCCCTACTGTGAATCGTTGAAAAGCTTACAGAAAAAGTTCAAACGGCCTAACAATGCCTTCTTCTTTATAACCGTTGAAGATAAACACATAGGCCTGATTCGCGTTGTAACAGATCTCAAAAATTCGGCAGCCCGTATTTCACCATTTTTAATCTTGCCGTTTTATCAAGGAAAGGGATACGCTCAGCTCGGACTACAGTTGATTGAAGAACAGTTTCCGCTCATTCAAACATGGTATGTAGACACGATTGCGGAAGAACCCAAGTTGGTACATTTGTATCGCAAAGTCGGTTTTCAGCAGCTACCAGATCGGGAAACGACGATTAATGAGCAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //