Array 1 27132-28806 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACWFC010000011.1 Xenorhabdus griffiniae strain XN45 assembly_contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 27132 29 100.0 32 ............................. AACGTGCACGCAAGGCCGCTGAACGTGATGCA 27193 29 100.0 32 ............................. AACAAGTGGAGGAATGACATCATGACAGCAAA 27254 29 100.0 32 ............................. GCAAAGATTTAAATAGCGAAGATTTCAGAAGA 27315 29 100.0 32 ............................. CTATTTAGATGCCGAAGAGATCTCAGCCAGCA 27376 29 100.0 32 ............................. AAATTCAGGGTCGTTATTATTGGCCTAATGAA 27437 29 100.0 32 ............................. CTGTAGCCCGCCTCGCAGCGCGTATCGACGCC 27498 29 100.0 32 ............................. CTACCGGGGTAACAGCGATAGCATTGCCAGCA 27559 29 96.6 31 ............................T TTAGTGAATTCACGGCAGCAGAAATCCGCTC 27619 29 100.0 32 ............................. TTCGGGTGAGCGGCTTTAAACCACAGATTGAC 27680 29 100.0 32 ............................. AGTTGATCCGCTTTGAACCCTACACCCTAAGT 27741 29 100.0 32 ............................. AGATATGCAGGACGCCGTTCGGGGTTTTAGGC 27802 29 100.0 32 ............................. CCGTTCATATATGCCTCTATTATTAAAAAACG 27863 29 100.0 32 ............................. CCAATCAGATTAAGCTTATTCAAAATCCATTT 27924 29 100.0 32 ............................. ATATGCCGCGTTGGTATCTGATGGAAGAATTG 27985 29 100.0 32 ............................. GTTATTATATCCAAAGGTTATCACATGGGGCG 28046 29 100.0 32 ............................. GGTGTTTCTTTTTCCTACACTCAGGGCGACGG 28107 29 100.0 32 ............................. TTTCTCAATCTGTAATGACATATCGATGTGAT 28168 29 100.0 32 ............................. TTAGTTTGTCAGATATCGGTCGGGCTAATTCC 28229 29 100.0 32 ............................. GCAACTACATTCAGTTCGATGGCAAAACATGG 28290 29 100.0 32 ............................. TATAGAACTCGCCGCTGGATGTGGTTGTTGTA 28351 29 100.0 32 ............................. ATAATCTGTGTAAAGCCAAAGTGATCACAAAT 28412 29 100.0 32 ............................. AAAGTACCGGAAGCCGCAGCGCAAAGGAGCGA 28473 29 100.0 32 ............................. TTTATGTACTCCACCTTGTTCAAACGGTTCCA 28534 29 100.0 32 ............................. TCTGATCTTGCTGTTATCAAATCAAACTATGC 28595 29 100.0 32 ............................. CTACTGGCTATTAGAAGTTGATGACCAAGATA 28656 29 100.0 32 ............................. CCATGAACGATAATGCCTACGATACATCAAAC 28717 29 96.6 32 ...........A................. CCCTGTCCGCATGGACATACGGAGCGATTTGT 28778 29 86.2 0 .............A......A......AC | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.3 32 GTGTTCCCCGTGAGTACGGGGATAAACCG # Left flank : ACCCCAACGAGGTCGGCAACATCTTGTAAAGCTGGGCGTTTTTTCTTCATTTTCAATGTAATACAATCAGTTATTGATAGGTGCAGAGGAATAACTTGCGGTTTTAACATATTTATACATCATTACAACACGCTTTCTGGTGAAAAATGCCAATATACTCGCATCTTGTTTAGCAGTAATTACTGAAATTGTGATGACTTACACGCGTTTGAGTGAATATTCCAATCTGTTGCTAACATCCCCACCGCACAACACAATAGTTTTCATAACTCTTACTCTCTTTGTTGTTGAGTTAAGGCCAACAGGTTCTTTTGCGATTTCTGCAATAGGAATCTCATAAGTTGGTAAATAAGAGTTAAGAATATGAATTAAATGCGATCTACATTACAGATGGTAAATCAGAAAAATGAACGGGAAAATTTGGCTAACTTTATAGGCTAAAAAATGGTAGAATTTTTCGGCCCTAAAAAGATTTTATAAAACAGATAGATAAAATTAGG # Right flank : CTTACTTGGATAACAAAATCATACACTTTAGAGACTTGAAAATATAATTGGCGCAAAAAGTCACTAAAAGCACTACTGGCTTCAAATCCCATTAAAACTATAAACAAACTTCAACAAGAAATTAGATACCTGAAACGAAAAGCAACCTATCAAGATAAGACATTATCAGATAATTCCACTCAGAAATTATTACAGGATAACCATAAAGAGAATCATCAAAATTTAGCTCATTATGATGCTATAGGATTTCCATCACTAACGGTTCACATAATCCTGAATGTGATCAATATTCCATATAAGATAAAATGTTAGTGATAACATAATATAAAATAGGTTAAATTCTCCAAATCCGTTGTTAATGCAGTGGATTTAACTAATTTTTTAAGTAGCTCGCTATTTTAAAAAATATAATCACCCAGGAAAACACTTTGAACGCTAATAATGCAACAGAAATAACTTACTGGAATCGTATGGTACCAGAACTTACCGTGACCAATTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGAGTACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTGAGTACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 12404-12922 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACWFC010000065.1 Xenorhabdus griffiniae strain XN45 assembly_contig_65, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12404 29 96.6 32 ............................C ACAATCGTGCCATCACTGACCGCTGCATGTGT 12465 29 100.0 33 ............................. TAATTTTTAATAAAAAAGGACTTTTTCACTGGT 12527 29 96.6 32 ............................T GTCAGTAGAAATTTCTTTTTAGTACCTAAAGA 12588 29 96.6 32 .A........................... GGCAGTCTGCCCGCGTTGCTCTGGCAACACCG 12649 29 100.0 32 ............................. ATAATGGCGACCGGGTGCCAACGTCAGTTGAA 12710 29 100.0 32 ............................. TGATCCATTCTTCGGGTGATGGTTGAACCAGC 12771 29 100.0 32 ............................. ATCTGGCGTTAGCCTCAGACGATTTTGCGCTA 12832 29 93.1 32 .C.........G................. AGGGCGCCATTGCGCATTGGTTTGATGAAAGA 12893 29 89.7 0 .C.........G...........A..... | A [12916] ========== ====== ====== ====== ============================= ================================= ================== 9 29 97.0 32 CTGTTCCCCATATGTATGGGGATGAACCG # Left flank : CGTACTGGCGTGCCAGCAAATTGGTATTCCTATCATTCCTGGCGTGAATAACGCCAGCACGATTGAACAAGCGCTGGAATCAGGCATCAATTTTGTCAAATTCTTCCCGGCTGAGCCTTCAGGTGGCATTGCGATGATTAAAGCACTACTTGCACCGTACCCACAGTTGCAAGTCATGCCAACCGGTGGGATCAACGTGAAGAATATTCGCGATTATCTTGCTATCCCACAAATTGTGGCATGTGGTGGATCATGGATGGTCAGCCCACAGTTGATTCGAGATAAGGACTGGAAGGCGGTTGGTAGATTGGTGAGGGAGGCGGTGGAGTTGGTTAACGCTTGCTGAGGGAATATCCATTTCACAATAGATAACTTTTTATGACTTAACATCATGAAACATCAGTGTTTTTATATTTGATAAAATGAAGTTTTTAAGTAAAAAACGTGGTGGGATTTTTTCTATTAAAAAAGTTCTTTAAAAACATAATAATAGAGTTGGA # Right flank : GTACGGGTGGCAAATCCACCTTGCTGGGTATTAGCAAACGAAGCGATAAAAATTTGCGTAGGTTACCCTGATCCCGTTCGCCCGCGCGTTCATGATGCGGCTTGAATATCCAGAAGAGCAAACTTGCTGAGTGGGTTCGTAAACAACTGGGTAAAAAGCATGCGAATGTGGTTGCCTGTGCTTTATCAGGCGCGGAACTCATCGTGGCACAGGCATCCTTACACATAGAGACGCCGGATTGAAGCAAGCCCATCATAGGGCAAAAATCAGTGTTACAAAAATAGGGATGACCATAGATTCTATTGCACTTTATTTTCCGTTTCCTGAGACGAACCAATGAATGCGGTTTCCCTGGTGTAATCAAAAATAGTGATTATTTAAAAAAATAAGGTAATGTTTTGATAATTGTAAAAATTTATTTTTTTGCAGATGTATTAATGTTAAATTTAAATACTTGGCCTAACAAAGAGTAAAAAATACTCATATTAAAATATAAGGAT # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCATATGTATGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCATATGTATGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 15850-14723 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACWFC010000014.1 Xenorhabdus griffiniae strain XN45 assembly_contig_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15849 29 100.0 32 ............................. CCTAATTCCTTCCAAATTTAACAATTCAATAA 15788 29 100.0 32 ............................. AAATTTATTTAATGTAGTTGAAGCAATCAAAA 15727 29 100.0 32 ............................. GACAATTACTTTCGCTCAATGCAACCGAATCC 15666 29 100.0 32 ............................. ATATTAGGCAAACCATCGTTATCCGATGATTT 15605 29 100.0 32 ............................. AAATTAGATTCGTCTTTTGTCCATGTTTGAAC 15544 29 100.0 32 ............................. CCATCCACATCTCATCCACTTTATAGCTGAAA 15483 29 100.0 32 ............................. TTCTTAGGGTTACTGGACAGCGCCTGCACCTT 15422 29 100.0 32 ............................. CCATCGCGTCTGGCAATGCTGACCAGTTCGCA 15361 29 100.0 32 ............................. AATAATATTCATATAGTCTCCTTATCATATGA 15300 29 100.0 32 ............................. GTTATCTAATTCTGACCGCGCTGGAATATTTT 15239 29 100.0 32 ............................. TCTGATTCAAGTTTTTCTACGCGTGATTCCAT 15178 29 100.0 32 ............................. TCATAACCGCTGCCATAGCTTCTGTTTTTGGC 15117 29 100.0 32 ............................. CGTTTAAAAAAAAGGAAATCACTTTTACCTAG 15056 29 100.0 32 ............................. CACTTAACGTTATTACAGATGCACAGGAGTAA 14995 29 100.0 32 ............................. GGTGCGCAGTTGGTGACAGAGGGCAAACTTCT 14934 29 96.6 32 .................A........... GATATTCTGACCTTTGTTATTTACTTTAGCAG 14873 29 100.0 32 ............................. AAAAAATATTATCAGCAATTGGTGATACTGAA 14812 29 100.0 32 ............................. TTTTTCTCGCGATTAGGCTGTGTCTTGGCTTT 14751 29 82.8 0 ........................CGGTA | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.9 32 GTGTTCCCCGTGAGTACGGGGATAAACCG # Left flank : TATAGCGCATGGCAAGGATTACAACTGGCATGGCATCACACCATGATACAGTTATACCCTTCTCCGTTTAATACTTGTGACTTTTTTGTCCAATTTCCATCTTGGTTACCATTGAATGACTGGTTACCCTCATTTTTTCAAGCGCTTGGGGATTGTTCAATAAAACAGTGGGAATTTTTAACACTGGATATGCCGCAATGGCTGATTGGTATTTTTGCCGCTTACCTGCTGGTGAGTATATTGGTGTTAGTGAGCCAGTTTTTTCGAAATCAGGATAGATCTTAAGAGTAAAAAATTGCCCCAAAAGGAGTCTCTAAAGGCTCCTTTTAACCTACCTTCCCTATATTCAATTCTCTATCACAATAATAAAAACGCGATCTGCTTTGCAGATTATAAATCAGAAAAAATGGAAAGATGAATTTTACTGATTTATAGGCTGAAAAAATGGTAGACTTTTTAAGTCGGAAAAATATTTTATAAAACAGTTAGATAAAATTAGG # Right flank : CGTTGTTCTACGATGAGTTGCTGGGCATTGCGCAGTGCCTTAATATCTTGTTGTTCTACCGTCTTGACTGGAACAAAATGGATGTCAGGTCGGCAGGCCATTTCGCAGATAGCCAGTGCATCCTTGGCATCATTTTTTTGATGATGACTGAAAGCCTTGACATGCTGGGTCGGCACAAGCCTGATGACAAATCCCACCATCGCCTGAAGGGTTCTACCCCAATAGTGAGAAGTGGCACAGGATCGTATTCATGAGATGTTCTCCCGCAATTCAGTGCATCGGAAAGAAAGATGACACTGTTTGCCGCTGAAAAAGGGGACGTCCATCACATCACTACAATCCCCGTACTCACGGGGAACACGCCGTGGGAAAATGGCGCTTATCTGGCTCGCTGGGAACAATTGACGGCTAAAGGGAAGACCCAGCGCTTGGGCTGGGATCTTTGAAGTCAAAGCCATCTAAAACGATATGCCAACCAAATTATTGCACCACCTCCTCCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGAGTACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGAGTACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //