Array 1 9085-8141 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMKU01000323.1 Actinomadura rubrisoli strain H3C3 NODE_323_length_10788_cov_35.5699, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9084 29 100.0 32 ............................. CAGTTCATGACTTACGAGCAGGTCAGGAGGTG 9023 29 100.0 32 ............................. CGGTCCAGGCCCGGAAGCGGGGGCGTCCGGCG 8962 29 100.0 32 ............................. ACGCGCCCCGGCCAGGACCGCCGCCGGGCAAT 8901 29 100.0 32 ............................. CGTCCCGTACTTGCGGACCCAGTCGGGGTGCC 8840 29 100.0 32 ............................. GGGACCGGCAAGGCTGAGGTGGTGTCCAAGCT 8779 29 100.0 32 ............................. GGAGCGCGAAGGACGTGGCCTACGCCGCCGCC 8718 29 100.0 32 ............................. TCGACGACCTGGACCGGCTGGATGGACGGCCT 8657 29 100.0 32 ............................. AGCTGGCACGCGAGGACGCCTTCCTGGCCGGT 8596 29 100.0 32 ............................. CTCGCCAAGGCCGACCACGACCAGCTGGTCAC 8535 29 96.6 32 .........G................... GGCCACGGGTGGGAATGCGGCCGGGGCCGGCC 8474 29 89.7 32 T........G...............T... ACCCCGCCCTATGGCGGACCCAGCGTCTGGCG 8413 29 93.1 32 ....................A....T... GAATCTGCCATGGTGGACGAAGCTGCGGAGGA 8352 29 93.1 32 .........G...............T... GGCGCCTTGACCGTCCGTGGCTTGTCGGCCTT 8291 29 86.2 32 .......T.G....T..........T... TACGGCGGCCACGACCTGGTCACCAACAACTC 8230 29 93.1 32 .........G...............T... ACCCTGGTCCCCGGCACCCTCGGCTGGCTCGC 8169 29 86.2 0 .........G.............A..AA. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 96.1 32 CTGCTCCCCACGCACGCGGGGATGGCCCC # Left flank : TGAACATCGAATCTGGCCGCAACTACGCCCAGGACATCGACTGGTGACGGTCATCATCCTCACCAACTGCCCCGCCGGACTCCGAGGATTCCTCACCCGCTGGCTAATGGAGATCTCCCCAGGCGTCTTCATCGGCGGCCCCTCCGCCCGCATCCGCCAAGCCCTCTGGGACGAAGTCCAAAAGTACGCAGACACCGGGCGCGCCCTACTCGCCTATAACACCAACAACGAACAAGGCTTCACCTTCGAAACCCACGACCACAAGTGGCACCCCATCGACCACGACGGCGTCACCCTGATCCGCCGCCCTAAAGATCAGCCCGCCATCTCCGCGGCCACACCCCCAACAGGATGGAGCAAAGCCTCCAAACGCCGCCGCTACGGCAAACGCTGACCACCTGTCAACGGCCACCACCCTCCCTGCGATGCCCGAAATGTCCGAACCCTCAAAAGTGCTCCAGATTTCTGTTACTAGCTGGTAAGGCCCCAGGTCAGCGAGT # Right flank : ACATCGTCCAGATCTCTCGGTGATCCACGGGAACGTCACCACGTGCGCGCGTAACGATGGGAGGCCGTGAATCCCTCGACGTCTGGCAGTCACGCGAGGACTGACGAAGACCCGCGCAGAAGACAGTTGCCCGAGCTGAGAACAGAACCAGACGCGGTTCTTGAAGGAGCAACTGGTTAGTGAGAGTGCGCCCCCGGGCTGGTGATGGCCCGGGGATGACCTTCTGGGGTGATTGAGAGGTTGTGCCACATCATTTGCGAGGGACGGTTGTTCTAACTGGGTTGGTCAGGGACGTCGAGGCTTGCGATCGCTTGCTGGGGCGACAGCAGGTCGATCGGTCGGCGTGGCAGTGGTCTCGGGCCGTCGGCTTCGATGAGGTGGGTGGGGCCGTGGGGCCAGCCGCCGGCGATGAGCGCGATGATGTCTGGCCAGTTCTGAAGTGTTTGGTGGATGACGTCGGTGTCGGGGCCGGACGTTGTGAACCAGAGCACAGGCAGGAG # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCACGCACGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGGCCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.20,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7758-9549 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMKU01000006.1 Actinomadura rubrisoli strain H3C3 NODE_6_length_79910_cov_33.9253, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 7758 30 100.0 31 .............................. GGCCCTAGTTTCAGATCGTTGACGAGCCCGA 7819 30 96.7 31 .............................C TCAAGGATCCAGTGGTGAACGCGAAGCTGGC 7880 30 96.7 31 .............................T AGCTGCGGAGTGGGCAGCCGGCCGTGACCCT 7941 30 96.7 31 .............................T GATTGGGGAGGTCCTGGACCTGCTCGCGGAT 8002 30 100.0 31 .............................. GTTGTGGAACGCCCTGGATGCGCTGCGCATC 8063 30 96.7 31 .............................C GCCAGGCAGGGACGTCAGGCGGTGAGTCCGG 8124 30 100.0 31 .............................. CGACCGCCCCGGCGTCGGACAGCGCGACCAG 8185 30 100.0 31 .............................. CCGAGCAGGAACGCCAACCGATCCGCAGCCG 8246 30 96.7 31 .............................T CGGCCCGCACGCCCGCGACCTCGTACGGGTC 8307 30 100.0 31 .............................. GCTCGGCCGCCCACTTATCGAACGGCCGCAG 8368 30 96.7 31 .............................T CAGTGCCGGTGTCCAGGTCGCGCAGGAACCA 8429 30 96.7 31 ............................T. ACGACCTGGGCACCTTCGCGGGCGACGGTGT 8490 30 96.7 31 ............................T. ACGACCTGGGCACCTTCGCGGGCGACGGTGT 8551 30 96.7 31 .............................C CGGGGTAGCGGGCGGGGAACTTGGTCAGCAG 8612 30 100.0 31 .............................. AGGACTACGTGGCCGCCACCAGTCACGCCGT 8673 30 96.7 31 .............................C AGGGTGTACGTGACCCGGTCCCGGTGTCGCT 8734 30 96.7 31 .............................C GGACGCCGAGCCGCTGTACCCGCCGCGCGAC 8795 30 96.7 25 .............................T CTCTGAATTGCGGGGGGGTATCTCT 8850 30 100.0 31 .............................. CGTTGATGACCTGCGGGGTCTGTCGCTTCGG 8911 29 93.3 31 ....................-........A GCTCATGGAGCAAGCGGAGAACGCTTCTCGC 8971 30 96.7 31 .............................C GCCAGGCAGGGACGCCAGGCGGTGAGTCCGG 9032 30 93.3 31 ........T....................C TCAGCCGCCTCCCCGCCCGCCGGGTCGCCAC 9093 30 93.3 31 .C...........................C CGTCTGCGACCAGCTGCCCTCCCTGGACCTG 9154 30 100.0 31 .............................. CCGCGCCCACGATGATGCCGACCTCCCGGAG 9215 30 93.3 31 ......A......................C GGGCGCGGGCCCGGTAGGGCACGGTGACCAC 9276 30 100.0 31 .............................. GCGGGGCCGAGCGCACCGTGCGGTCGGTGAT 9337 30 96.7 31 .............................C AGTCTCGCCGTCGGCGCAGACGTAGGTCACG 9398 30 100.0 31 .............................. GTCTTGCGCGCTGCCTGTGTTGGACGAACTG 9459 30 93.3 31 ........T....................C CGATCGAGGTCCGCCTTGACGCGGGTCAGAC 9520 30 93.3 0 ................T...........G. | ========== ====== ====== ====== ============================== =============================== ================== 30 30 97.1 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : CGATCACATCCCGCACCTGAAGAGGCAGCCATTCATCCCAAAGCAGCCCCGCGACCGCCCCGCTATCCGCCAGATGCCGCCATAACGGAAGCCAATCGTCCTTGTCGCGATCATGCTTGGCCCACACGGCACGCGCCGCTTCGGACAGTCCGTCCCCGAGCCGCGCCAACTCCGCCGCATATTCAAACACACTGGCATCCAAGCCGCCCGCCCCTGTGGCCACAGGGGTTCTTCGGCCAATTGGACCAGAAACGGACAAGCCACTACTGACTGCATCGAGTCGTGCTACAGAGCGACACCTCCACCCTGCCTGACCAAGGACCGACTCTTCTCGTCGTCGACGAACTTGCAGACGGCGGCCTTATCACCAGGCAGCTGAACAGTCTTAGACTGCGAGTGCCCGGCGACACTTCCCCATGCCACACAAGTCCAAAATGTCCAAATCCTCAGAAGTGCTCGATTCTTACCCCCTCCCGAGATAGACGCCCAGGTCAGGCAGG # Right flank : GAGCCCAGGGCTGCGAGTTCGGTGCGATGTTGAGCGAGAAGGGGGGCTAGGCGGGACGGAGGCCGCGGGAGTCGACTTGATGTTGGGCGATGAGCTGGTCGGTTAGGACCGTTTGAAGCTCCGCGATCTTGGCTTGGGCCTCTTCGAGCTGGTGCTTGAGTTCCTTGACGTTGCCTCGTTCGCCTTGTCCCGTACGAATCTTGTCCAAGGCATGGAGGGCTGTCTCGTCGGCGTTGGGGAGGCTGTGAAGGTAGCGCTCGGTTGTTGAGATCCTGCGGTGTCCGAGACGCTCCTTGACCACCTGTAGGTCGGCTCCGCCAGCGAGGAGCCATGAGGCGTGGGCGTGTCGCAGGTCGTGGATTCGGGGCTTGCTGTCGAGGTCGGCAGCGGCACGAGCCGGGTACCAACAGTGCCTACGGAACCAACTCGCGGAAATGTGCGGGTCAGTGTCGACGGTGCGAGGCTTGCGAGGGCTGTCCTTGCCGCGAGCGCGTCGTTCG # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.46, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 27002-25507 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMKU01000084.1 Actinomadura rubrisoli strain H3C3 NODE_84_length_28655_cov_29.9892, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================================================================================================================================= ================== 27001 30 96.7 31 .............................T GCTGTGGAGGTCCCGGCGCGCCAGACGCGCC 26940 30 100.0 31 .............................. CGATTCGGACGCCGAGCGCGACCAGCAGGCC 26879 30 100.0 31 .............................. CGCGATGGCGGAGAGCCTGCAGACCCCGGAC 26818 30 100.0 31 .............................. TGAGCAAGCTCGCCTGCGACCACCTGCACAG 26757 30 96.7 31 .............................T CCTCGGCCATGTCCATCGTCAGGACGGTGTC 26696 30 100.0 31 .............................. AGTACCAGCAGGTTCGGACTTGGCAGAACGC 26635 30 100.0 31 .............................. GTCCCGGCCCCGGCCGGATGCTGTTCGCGTC 26574 30 96.7 31 .............................A GCGCAGCCGCCACCGCCGCCACCGCCACCAG 26513 30 96.7 31 .............................C GCTGGGCCGTGCGGGCCAGCGGGTGGGTGTC 26452 30 96.7 31 .............................T ACGCCGAGCCGGTCGCCCATGCCTATCTCAG 26391 30 96.7 31 .............................T TCCATTCCACGATCAGGTAGTCACCTGGATA 26330 30 96.7 31 .............................T CATCGAACGCTCCGGCGGACTGCTGGTAGGT 26269 30 100.0 31 .............................. GCTCCACGATCTACGACGGGGACCGGATCGG 26208 30 93.3 31 ............................TC CACGCCCTCGTTTTCCAGCTCCTCACGCGCG 26147 30 100.0 31 .............................. TGACGAGCTGGTTGGGGATGTCCTCGGGGCC 26086 30 96.7 31 .............................T CGCGCGAGGACGGTTCCCCCGAGCTGCGGGC 26025 30 96.7 31 .............................C GCAGCACGTCACCATCGGGGTCCTTGGAGTC 25964 30 100.0 31 .............................. CGGGGCGCCCCACGGTCCGCGTCACGGCCGT 25903 30 100.0 31 .............................. GTCCAACCCGAAGAAGGACAAGTCCGCCCGG 25842 30 100.0 32 .............................. ACCGCCATCGGCCGACTTCTTGCAAGTTGCGT 25780 30 96.7 31 .............................T GGGGCGGGTCGCGCCCATACTGTGGATCGCG 25719 30 83.3 151 .....................GA.CA...T TCCTTCTTCGGCCGGCGGCGAGGCTGGGCGTTGGACCATCCCCGGGTGCGCGGGGAGCACAGAGCGCTGGTTTTGCACGCCAGATGTCTGGGGGACTATCCCCGCGCGAGGATGGTCCCTCGTAGTAGCCATAGGCGGGTGGGCCCGCTAC C,AT [25699,25702] 25535 29 90.0 0 ........G..-...........C...... | ========== ====== ====== ====== ============================== ======================================================================================================================================================= ================== 23 30 97.1 37 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : CTGGCCCACAACCCCGAGCACACCTCGAACCCGCGGAGACCCACGCATGCAAACCCTCAGATACACAGATCTCACCGAACTACCATGCGTCGTCGACATCATGACCGCCGCCCGCGTACTCGGCCTATCCCGCACCTACGCCTACCAACTCGCCAAGCGCGAGGAGTTCCCCTGCAGAGTGATACGCATCGGGAACTGCTATCGCGTACCAACAGCAGCCCTCCTCGCTCTACTGGGCGCAGACCAGGCCAGCTGACTGGTTAAATCGCAGCAGAGCAACATCTGAATCCTCAGGGGTCGGAGGACAGGTCGGCCCCTGAACCTCCGGTGCGGGTGATGTGGAAGTGAGTAGCGTGTCTCTTCTCCGACTGGCCAGCCGGGCATCTCCGGGCCCGAACGCTCGCGTTACCATCAACTTTCCGCGCGTGTCTGATATGTCCGAGTCTCCACAAGTGCTCAAAACTGGCATGTCCGGCCGATAGCGCTGCAGGTCAGCGAGG # Right flank : ACTACACCTTCAGATCCGACGCCGAGAAGCGGTGCTCCCTGTGCGCGGGGGTAGGGCGCTGACGGGCTTTGCTGTGTGCCTGCTGCAGGCACAGCGATGGGCCTTCTTGTCCGGCGGCTCGCCGGTTCGACGGGTGACGTGACTGGGTCATCGGGCTGGAGCCGGTGTCCAACTGGTGGGATGGACGAGGGGTTCACGGTGCCGGGGGAGCGGCAAGGATCCGCCATGATCGCGCACGGTTACAGTGATAGAACCAGTGATAGAAGATCTTGGTCGGGACCCATGATCTTGGCGAGTGGGGGTCTGACCTGCGGGAACTCGGGAGCGGGCGACGGGAATCGAACCCGCGTAGCCAGTTTGGAAGACTGGGGCTCTGCCATTGAGCTACGCCCGCGAGCGGAGCGAGGGGTGGGCCCTCGGTCGCCATCCCGTAGGGTACAGGGTTTCTCGGGTGGGCGTGGTCGCGGGGCGTTGGGCGACCGGAATGCCGGGTTGAGCGG # Questionable array : NO Score: 5.27 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.48, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //