Array 1 137780-137546 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV797776.1 Lactobacillus sp. HMSC072E07 Scaffold110, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 137779 36 88.9 30 NNNN................................ TTCATCTGGGTAGTGTTGTTGTAATTGGTC 137713 36 97.2 30 ....................T............... CCGTTTTAGCGGCATCGATTGCCGGTATCT 137647 36 100.0 30 .................................... TTTGTTATTGATCGAATCAAATGTATTATC 137581 36 66.7 0 .......................AA.ACCTTCAGTG | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 88.2 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Left flank : CCCATAACGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGTAGATGTCAGATCAATCAGTTCAAGAACGAATAGTTGCTTGATCGTGGCCCACAGCTGGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGCTTAAACGTTGATGGCGGTGACGATAGCCAAGTCTCAGGTAGGTGTCAGATCAATCAGTTCAAGAACCACGTTGTAACGGCTGACGATGTTTCTACTGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACTTACCATCATGACCCCATACGGCTGTTGGGGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : AAGACTCACCTCATAAATGCTATGCAAATCCCAAAAGAAGGCAACAGCATTGTCAAAAGCAAAACTAATCCTTTCCCCAGCATTTTACACTGATCTCAAAGAAATCCGTCACATGTACCAACAGGCGTTCAAATCACTTTACGGCAAATATCAAGATCGGGAAACCAATCCCTACTGTGAATCGTTGGAAAGCTTACAGAAAAAGTTCAAACGGCATAACAATGCCTTCTTCTTTATAATCGTTAAAGATAAACACATAGGCCTGATTCGCGTTGTAACAGATCGCGAAAATTCGGCAGCCCGTATTTCACCATTTTTAATCTTGCCGTCTTATCAAGGAAAGGGATACGCTCAGCTCGGACTACAGTTGATTGAAGAACAGTTTCCGCTCATTCAAACATGGTATGTAGACACGATTGCGGAAGAACCTAAATTGGTACATTTGTATCGTAAAGTCGGCTTTCAGCAGCTGCCAGATCGGGAAACAACGATTAATGAGC # Questionable array : NO Score: 5.27 # Score Detail : 1:0, 2:3, 3:0, 4:0.41, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 138107-137873 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV797776.1 Lactobacillus sp. HMSC072E07 Scaffold110, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 138106 36 97.2 30 ..................................G. TTAAACGTTGATGGCGGTGACGATAGCCAA 138040 36 97.2 30 ...........G........................ CACGTTGTAACGGCTGACGATGTTTCTACT 137974 36 100.0 30 .................................... TTACCATCATGACCCCATACGGCTGTTGGG 137908 36 91.7 0 .................................NNN | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 96.5 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Left flank : CTTCCGCAATGCCGCCTCTGTTTTGACCTGCTCAGCGCGATCATGTGCATTTGTCATTTTAGGATTCCTCCAAGTCTTTATCGTTGTTAACGATACATTACGCCGTCAGTTGCGAGAATGCCAGTTAACGTACTTCGGAAGATGGTTGTGTTGCGTTTGAGGCTGTGGTGGCTTGGAGGAATTCTATTTTCGGCAAGTGGCGGCGTTATTCTCTGTTTTCTATAACGCGCTCGCAGCCGCAGAGATCTACGTGTAAGGACCTTGGTTGCAGTTGCAATGGCCAAGAGCGGGCTATCACGCCCAGGGCCGCTTATGTTCTGGCTTACGCCCATAACGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGTAGATGTCAGATCAATCAGTTCAAGAACGAATAGTTGCTTGATCGTGGCCCACAGCTG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGTAGATGTCAGATCAATCAGTTCAAGAACTTCATCTGGGTAGTGTTGTTGTAATTGGTCGTCTCAGGTAGATGTCAGATTAATCAGTTCAAGAACCCGTTTTAGCGGCATCGATTGCCGGTATCTGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACTTTGTTATTGATCGAATCAAATGTATTATCGTCTCAGGTAGATGTCAGATCAAAAAACCTTCAGTGAAGACTCACCTCATAAATGCTATGCAAATCCCAAAAGAAGGCAACAGCATTGTCAAAAGCAAAACTAATCCTTTCCCCAGCATTTTACACTGATCTCAAAGAAATCCGTCACATGTACCAACAGGCGTTCAAATCACTTTACGGCAAATATCAAGATCGGGAAACCAATCCCT # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 3 157214-156782 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV797776.1 Lactobacillus sp. HMSC072E07 Scaffold110, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 157213 36 100.0 30 .................................... ACCGGTATCAGCAACCCCGCAAAACGTTAC 157147 36 100.0 30 .................................... AAAATCAGGTAATTTCATTTTTATTCCTCC 157081 36 100.0 30 .................................... TCTGTTGAGCTGTCACGTTAATCCTCGTCC 157015 36 100.0 30 .................................... AACACAAGCAAAACAAGCAACTACCGAAGA 156949 36 100.0 30 .................................... AAGGCAATTGCGCCCGTGGTGCTCAATTGA 156883 36 100.0 30 .................................... AGTATATAATGACGATCCGTACACGTTTAG 156817 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 100.0 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Left flank : CTTGAACTGATTGATCTGACATCTACCTGAGACCGTAATGGTAGCATTGTCCGGCTTGACCTAGTTCTTGAACTGATTGATCTGACATCTACCTGAGACCAAGCTCATGATGGTCTGGCTTCGGCTTTGGTTCTTGAACTGATTGATCTGACATCTACCTGAGACATATGACGGGAACTGATTCATATACCCAAAGTTCTTGAACTGATTGATCTGACATCTACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGTAGATGTCAGATCAATCAGTTCAAGAACCGCGATTTCAGGCGTGATCTCGTTCAACG # Right flank : TCGCCTAGCTTGACGGGATCAATTTTAATCGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAACTGATTGATCTGACATCTACCTGAGACGGGCCAAATACGCAGCATGGCGCGAAATGCGTTCTTGAACTGATTGATCTGACATCTACCTGAGACCGGTGTTTTCACACAGCCTCTTAATCAATCAGTTCTCGGCTATCCATAAAATCTCTGTCAATATAGATATACTGGCACTTCTCAAAAAACTTTCTGCGTTCGACATCTGAAAATTCAATGAGAAGTAATTCCAACGATGTGTTCTTAACCTGATCTAACAGCTTGCTCAGACTTTCAACATCTAAATAATGACTGATGTTGGCAAAAATGACAAGACGTTTCTCCTCAAGTTTCGCCAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Alternate repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 4 157436-157600 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV797776.1 Lactobacillus sp. HMSC072E07 Scaffold110, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 157436 36 100.0 30 .................................... CAAAGCCGAAGCCAGACCATCATGAGCTTG 157502 36 100.0 30 .................................... TAGGTCAAGCCGGACAATGCTACCATTACG 157568 33 91.7 0 .................................--- | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 97.2 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Left flank : CATCTACCTGAGACTCTTCGGTAGTTGCTTGTTTTGCTTGTGTTGTTCTTGAACTGATTGATCTGACATCTACCTGAGACGGACGAGGATTAACGTGACAGCTCAACAGAGTTCTTGAACTGATTGATCTGACATCTACCTGAGACGGAGGAATAAAAATGAAATTACCTGATTTTGTTCTTGAACTGATTGATCTGACATCTACCTGAGACGTAACGTTTTGCGGGGTTGCTGATACCGGTGTTCTTGAACTGATTGATCTGACATCTACCTGAGACACGTTGAACGAGATCACGCCTGAAATCGCGGTTCTTGAACTGATTGATCTGACATCTACCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTAGATGTCAGATCAATCAGTTCAAGAACTTTGGGTATATGAATCAGTTCCCGTCATAT # Right flank : | # Questionable array : NO Score: 5.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //