Array 1 28427-28754 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHAA010000001.1 Pectobacterium aquaticum strain NAK:467 JFJGBDDA_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 28427 28 100.0 32 ............................ AGTAATTAAGGCATTATATTTTCTGTCACGAC 28487 28 100.0 32 ............................ CGAATAAACCTAAAGAGTCAACTTTAGAAATT 28547 28 100.0 32 ............................ GTGGACTCAATAAAAATCATGCCCCGTTCTGC 28607 28 100.0 32 ............................ ATCTGTCGGGTGATAACGGTCAAGTGGGGAAT 28667 28 96.4 32 ............A............... GTTTAAGTCATATGTATCGATCGCTGATAACA 28727 28 85.7 0 ...........CAC........A..... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 97.0 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : TCCTGACGTTCTGTCATAAAGTCGGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGTTTAACAGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGAGCACCTCCTCCTTAATAAATACAGAAATTCAGCCAGAGACTTACCGTTTATTATTGCTGGCTAAAACATAGGCTAAGTATAGATATTAATCACTCGGTTGTATATCCATAGCATATGCAGATACCTGACATAGGCCTATCGTCGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTACGCATCGTCGTAACTTATTGATTTTAAATTTAGATTATCAGCTCTGATAAAAAAGGTTTTTTCGGGGAAAATGGTTTATTTCCTTTTAAAATTAGGCAACTACCGTAAAATATGAAC # Right flank : AATTAAACGCGCCGAAAATCAGGAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGACTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTAGAGCAGGCACAGCTGATTCTCGGCTATCATGCCCGCCTGTCGCCGAACGCCGTCGGGCTGGAATGTCTGGGGTTAATTGAGGTGCGACTCATCAATCACACCAGCGAATACGTTGAGCGCTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGTGATGCCGATTACCTGTTAAAAGTCGCCGTGGCCGATCTGCCCGGACTCAGCACGCTGATTAGCCAAATTCTGTCGCAGAACAAGAGCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 33719-32069 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHAA010000001.1 Pectobacterium aquaticum strain NAK:467 JFJGBDDA_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 33718 28 100.0 32 ............................ AGCTGGCGAATTCTCACAGCGGATGCAGTAAT 33658 28 100.0 32 ............................ AATCACCTCTTGCACAATCCACATCGCGATGC 33598 28 100.0 32 ............................ TCATCTCTATGATGTAATCAGCATGCTCACGC 33538 28 100.0 33 ............................ AGCTGGTGGCGGCGCAACAACTCAGGGATCCAC 33477 28 100.0 32 ............................ AGCCAGCAACAGGCTTAACTAGCGGATATTTA 33417 28 100.0 32 ............................ ACCCTCAAGGCTGTCTAGCAACGCTGAATTGC 33357 28 100.0 32 ............................ GCTGCGTTTTTGTGCTTCGGCTACGGCGTCTA 33297 28 100.0 32 ............................ ACATCGAACGGGGCTATACCTGGCGGGCTGAC 33237 28 96.4 32 ....................A....... TCTCTTCTTACCGTGATTTTCATGGAAGCCAT 33177 28 100.0 32 ............................ CGTAATCGCCGCGTATAAGCGCAAGCTGGCGT 33117 28 100.0 32 ............................ GACAGAAGCAGAGAAAGAAATCAAAACTCTGC 33057 28 100.0 32 ............................ GGATGCAACGCGCAGCGGGGCCAGCACCAGCA 32997 28 100.0 32 ............................ TCTTCGGCCTCAATAGCCGCGCGAATTTCTGC 32937 28 100.0 32 ............................ AAGCTGGCCGACGAAGACGTCGAAGCGTTCCA 32877 28 100.0 32 ............................ AGCTTATCTAATTTCTGCTGTTCAGTTACCGT 32817 28 100.0 32 ............................ AATGGAGAAGAGAATATTTTCCATGCTGCTAC 32757 28 100.0 32 ............................ AATGACGCGACCTCCAGCAAGCATTGATTAAA 32697 28 100.0 32 ............................ GCGACGAACTGGACTGGCTGCATATCATCGAC 32637 28 100.0 32 ............................ AACAAGCGTCCTGACTTCACTTGTAATGGGTG 32577 28 100.0 32 ............................ ATCTGGAATTAAAAAGTATAAAAGATTGGTGA 32517 28 100.0 32 ............................ TGAACAGGTGGCCGCTGATTTAGTTTTCTTCA 32457 28 100.0 32 ............................ TCTCCCTGTGTACCCGATGATGCGCTGATTGA 32397 28 100.0 32 ............................ ACGGCACAGTTACTGACTGGCTCTACAGTGAC 32337 28 92.9 32 ...........C.C.............. TCCTGCTGAAAACAATGGACTGCCGGAATACA 32277 28 92.9 33 ...........C.C.............. GTAGACCACGAGGCTGTGCCATTCGGTCTCTTC 32216 28 92.9 32 ...........C.C.............. AGCATTGGTTGAATCTGCTGACCTACGGCTGA 32156 28 92.9 32 ...........C.C.............. TGAACCAGTTAGAGCAGGAGAACGGCCCGCTA 32096 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 28 28 98.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GGCTAAAGGCGTTATCCATCATGTATTTTCTGCCGTAATCGATAATAGCTGTGACGCCAGCGGAATGAGTCGCAGGCTAACTATTTGATAAAGAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGATTATCACAGTTGTATATGAAAAATTCTGACCGCAAAAAATATTACCCAAGCACAGACCCTTTTTATTTGGCCTATTTCACAGGCTTAACAATCAATGAGTTACAGATGAGCTGAAAAAAAAGGTTTTTGCAGGGAAAACGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTGATCGGGCTACTGTTCACTGCCGTATAGGCAGCTTAGAAAGTCTGGAATTAAAAAGTATAAGAGATTGGTGAGTTCACTGCCGTATAGGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATAGGCAGCTTAGAAATGACCGTTAGCATCAAATTTAAATTCCGGCGC # Right flank : AGCGTGAATCATTACCGCGTCAATAGATCCTAACCCGCATTTATTTCTCGCCAGTTCAGCCAGATTCGCATATCAAATTCCAACTGGTGATAATCAGGATCCATATGGCAGCAGAGTTGGTAGAAGGCCTTGTTGTGATCTTTTTCTTTGAGGTGAGCGAGTTCGTGTATCACGATCATCCGCAGGAAATCTTCTGGCCCGTCACGGAACAGCATCGCTATTCTGATTTCGTTATTGGACTTTAATTTTCCGCCCTGCACACGCGCCACAAACGTATTGGTTCCTAGCGTCCCTTTTATCGGGTTCTGTTTATTGTCGTAAAGCACCTTTGATATTGCCGGGGCGTTTTTCAGATAGCGCTGTTTCAGCTCGGTGACAAACTGATAGAGTGACTTATCACTCTGGATCGGATGACGGTCAGGGTATCTTTTTTCCAGCCAGAGGCCGAGTTTGCCTTGATCGAGGAGCGTTTGTACTTGGGCAACAATCGCTGGGGGATA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 42479-43768 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHAA010000001.1 Pectobacterium aquaticum strain NAK:467 JFJGBDDA_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 42479 28 100.0 32 ............................ CTATGCGCGGCGCTGTATCGGTAGTGATGCAT 42539 28 100.0 32 ............................ GATGCAGAAACCGATGAATCCCCCTATTGAAT 42599 28 100.0 32 ............................ ATGCCCAATTCTCCGCGACTAGCATTCCATGC 42659 28 100.0 32 ............................ ACGTAGATAACCATTAGCTCGCTCAATAGGGT 42719 28 100.0 32 ............................ GGACTTAGTGCCGATGATAGTGGTCCGCTGGT 42779 28 100.0 32 ............................ GTTAAGTAGCTGAAACACATCTGAACGTTTAA 42839 28 100.0 32 ............................ AGTATTTTTTGTGCTTCTTCGTTCATCAGTTA 42899 28 100.0 32 ............................ GGATATGCATCGATTGGAACCGGATTAGGTAT 42959 28 100.0 32 ............................ CACGGTTTAGAGCCGTAACTAAATGACTGAGA 43019 28 100.0 32 ............................ TTACCTTATGACTCAATCAAGCGACGCCGTTT 43079 28 100.0 32 ............................ TTTTCAAGCTGCATCTCTCGTCGGCGATATTC 43139 28 100.0 33 ............................ GTGGCAAAGCACTTGGACTGACAAATGATAGAA 43200 28 100.0 32 ............................ AATAGCGCGTTTAAGCGCTGTAACGTTCATGC 43260 28 100.0 32 ............................ ATTTTCTTGTCGTCGGGAATATAGTGCTGGAG 43320 28 100.0 32 ............................ AAACAATTCCAAGTAAGCCGGATGTGTCCAGT 43380 28 100.0 32 ............................ ATCAACCCACTCACCAGCGGTGAGAATTTTAA 43440 28 100.0 32 ............................ AGAGTTAGCCTGTGAAATTTTCTTCCACCACC 43500 28 100.0 32 ............................ AAGATGGAAATAACCATGATGAACGAGACCAT 43560 28 100.0 33 ............................ TGGCGAACTCGTCGAGGGTGTTGCCGATATCAC 43621 28 100.0 32 ............................ ATGTTCAGCGCTTTTTCCATGTCTTTATCTTC 43681 28 96.4 32 .............C.............. AATGTTCCAGTGATTTGAGAGGAACTCCTTCG 43741 28 82.1 0 .............C........CG.CG. | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GGCGCTCTCTACGCTAGATCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACATTGATTTCTGAGTGTAAAGCCGTACCCAACGGCGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCAGAACGGCTACGTCGACGCTCGGTGAACAAAGGCTGGCTAACGGAAGCGGAAGCCGCAGCACGAATTCCCGATGCGGTGGAAAAACGCAGCGCACTGCCGTTTGTGCAAATCAAGAGCCTGTCCAACGGGCAGATGTTTTTCGTGTTTGTGGAACATGGTCCGCTACAGGATGCTCCTATCGCAGGACGCTTTTCCTCCTACGGCCTAAGCGCAGAAGCCACCGTCCCTTGGTTCTGACCCTTTTTTGGCGACCATCTGCAACCCATTGATTTTTAAATGCAGTTGGTCGCCCTAATAAAAAAGGGTTTCTCGCGATAAAATGAATATTCTCTTTAACAATCTGGTAGTTAGCGTAAAAACCTAACTA # Right flank : ATTATCGAGATGCGTCGCTGGCGCGACGCATTTTAGAGGCTATTCCCCGTTGAGGGTAACCACCAGCGAGCGGCCGCCGCCGTGGTTGCGGTGTTCACACAGGTAAATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGAATCGTTAGACTGTTGCCCAGCAGGCTACCTTTTAGGTGCGCGGGCATGTCGTCGTTGCCTTCATAGGTATGGCGGTAATACGGCTCATCCTCCGGCACCAAGCGATTAAAAAAGCTCTCGAAATCCTGCCGCACCGTGGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGCTTGATGAACACCTGCATCAGCCCGACCTTTATCTGACGCAGGGCGATAACCTGCGCCAGTATTTCATCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGTGCCCACATCACCGTACTCCCACTATCAGGCTTCGCGCGCCAGAATCGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //