Array 1 72160-71947 **** Predicted by CRISPRDetect 2.4 *** >NZ_LISY01000003.1 Streptomyces sp. TSRI0261 scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 72159 29 100.0 32 ............................. GTCGTCGAGCTGTTCGCCGACGGCATCACGTA 72098 29 100.0 32 ............................. CCAGCAGCGCAGCGAGCATGTCCGCGGGCGTC 72037 29 100.0 32 ............................. ACACTTGCTCACATGGCGAACGTCGTGGGCGT 71976 29 86.2 0 ......................A..G.AA | T [71956] ========== ====== ====== ====== ============================= ================================ ================== 4 29 96.5 32 GTGCTCTCCGCGCGAGCGGAGGTGACCCG # Left flank : CGGAGGGGAGGCGGCGAATCCCTTCTGAGACCGGTAAGTCAGTGGGCACCCACGGCGTCGTGTGGAGCTGGATTCCTGTTACTGGCGGTGCTGTGCCACGCTCTTCCGAGTCACTGCGACAGTGTGATCAGACCCAACGACCATTGCGTTGCCGCCTCATGCCACACGCAAACACGCCTACCCCGACAACCCCACGCCCTCCCGAGCGCTGCCGCTGCATCCAATAGACGGCCCCACACGAGGCACGGCTCGCCTTGCCCCTCTCGTGCTCCCTGCCTCATAACAGCCCATCTAACAGCACATCTAGATGTATTGTTTGGCGCCCAGTCAGGCAGCAGAGTCGGTCAGCTTCCACTGACAGAATGAGCTGACCAGCCACTCCTACCCTCTGAAAGATGGCGCCGTCTACAGTGCGCCCCATGCCTACTACCTGCCCGGTGCCGAATACCACTCGTGGTAAAGAAGCGGCAAAGCACCTCTAACGCTGCAGGTCAGGAAGG # Right flank : CAAGACGGTCAGCTCGCTTAGTGCAACGGCCCGAACAAGGCCTGCTCTGGTGCACGGACCCAGCGCTGTCCCCGTGGAAAAGGTCAACTGCGAGGGCCTGTATATGCGCATACACGCCCTCGCCGCGCACCTGACGGGCCCGCTGTCCCTGCGCCTGCCGCCGCGGCACGTGACCGTCCTCGAGAGTCCGGCAGCCGCCCACACCATGGTGAGCGAGGTGAGACGGGCGCCGCCGAAGCCACCGACACCCTGATCGTCTACTTCGCCGGCCATGGGCTGATCGACCCGCAGGACACACTCAGCCTGGCACTGCCCCACACCGAGTCGGGGCGCGTGGAGACCGGCCTGCCCTACGACTGGCTCCGCCAGGTCCTCCTCATGGACTCCCGGGCCGAGCGCCACGTGGTGATCCTGGGCTGCTACTACAGCGGGCTGGCCCTGGGGCGGATGAACGCCGCGTCGCCCGGTCTTGCCGACCAGGCTTCGGTCGAGGGCAGCTT # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 159949-161930 **** Predicted by CRISPRDetect 2.4 *** >NZ_LISY01000001.1 Streptomyces sp. TSRI0261 scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 159949 29 100.0 32 ............................. CTCATCGTCCCCATCGAGGACCCGCGCTTCGG 160010 29 100.0 32 ............................. TCAGACCAAGGACGCTCATGCTCACCTTCTTC 160071 29 96.6 32 ............................G GAGGTGGCAGACCTTCTCGCGTGGACGGCCGG 160132 29 100.0 32 ............................. ACCCGGTACGCGATGGCCCTCCGCGACGCGGT 160193 29 100.0 32 ............................. TCCTTGCGCATGATCCCCAACGCGACGCCGAC 160254 29 100.0 32 ............................. GCCCTGAGTCGCCTCTACAGCGGCGAGGAGCT 160315 29 100.0 32 ............................. GGCAGAACACCCTCCTGGAGTGGGACCTGAGC 160376 29 100.0 32 ............................. CCTGCACATCCGTGACCTGGACGGCCTCGAAC 160437 29 100.0 32 ............................. CGATGACCTTCGAAGGCCACTACGGCAGGGGC 160498 29 100.0 32 ............................. CGATGACCGTCGAAGGCCACTACGGCAGGGGC 160559 29 100.0 32 ............................. AGACCGTCGCGGTTGAGCTGCCAGCCGAAGGT 160620 29 100.0 32 ............................. CCGCGGACACGATGACGGTCATGTTCGGGGTC 160681 29 100.0 32 ............................. ACCGTCACCGGCCCGTGGCCGTGCCACAGAGC 160742 29 100.0 32 ............................. CCCTCCGCGACCATGGTCGACTTCCCGACCTG 160803 29 100.0 32 ............................. GCGGCGTTGAGCTTCGGGATGCCCAGGTGCCG 160864 29 100.0 32 ............................. ACAACTGGGAGGCATCGTGTCCACACTCGCCA 160925 29 100.0 32 ............................. TCGACAACCGCGAGGACGACGAGATCCCCGAG 160986 29 100.0 32 ............................. GTAACGGGAGGCACCACGGCTCTAGTGGTCAT 161047 29 100.0 32 ............................. GTGTGGGCGACGGGGAGCAGGAGCCAGAACGT 161108 29 100.0 32 ............................. CACCTTGGGGAGGTCGTCAAGTTTGAGACGCG 161169 29 100.0 32 ............................. TTCTCGGACCCGGCCCGGAGTGACTGCGGGTA 161230 29 100.0 32 ............................. TGGGCGTACTCGGCGGCGTCGATGGCCTCGAA 161291 29 100.0 32 ............................. TCGCGAAAGGCGGCGCTGTCCCTCGACGTCGT 161352 29 100.0 32 ............................. CTCCAGCACATCGCCCGCCACGACCCGGCCCG 161413 29 100.0 33 ............................. CCGTGGTGCAGAAGGTCCACCGAGGAGCCGCTG 161475 29 96.6 32 .......A..................... GACACGCTCCGGTCCATTGAGACGAGGGGGTG 161536 29 100.0 32 ............................. GGCTACGCGAACGGACGGTGCGCGGCGGAGTC 161597 29 100.0 31 ............................. TCGGCCGGGGCGCCTTTTCGGCGGCGGCGGC 161657 29 100.0 32 ............................. CTGCGCGGCATTTCGGGCGAGGCTGGGCGAGT 161718 29 100.0 32 ............................. AACGAGCTGGAGGCCGCGAAGCGCCGGGGTCG 161779 29 93.1 32 .............AC.............. CGACAGAAGTCCGACCAGGACCCGGCCGGCTG 161840 29 86.2 34 .............A.......A..TA... CTGATCCGGGGGATCGCCGGTTTGGTAAACCGGC 161903 28 75.9 0 ..-..........C...A...CA....GG | ========== ====== ====== ====== ============================= ================================== ================== 33 29 98.4 32 GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : CCACGGCCGGAAGCCCCTCGCCCGGCGCACCGACCCCCGCCCACCACCTCCTGGTGGAATGCACGGAATGCGGCCGCCCCGGACCCCCGCAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCGTACGGCACACTCCGGAGCCCCCGAGCACTCGCCCCGCCCCGCCGACATCGCCGACGTCAAAGCCCACATGAACAACCTCCGCGACCTGCTCAAACCCGTCTGACCCCGCCTCCGTCGACAAGCCTGCCCCCTCTCACGGTCCTCGCCGAAGCCATCAGCAGGGTGCGCACACGAGACCAAAGCCCGCTTGCGGCGGGACGATAACCACCTTCCTCCTCAAGACTTCGCCCCCTCCCGGCCCCGGAAAGGGCAGAATCACTCCCGAGCCTGCAGAGGCCCAAGCAGAACCATTCGCGCCACAGAGGGAAATATGTCCGTTTCTCAAGAAGTGGGTAAATTCAGCCCCGCCGCCACATAGACCCGCAGGTCACGAACT # Right flank : GAGTCAAGTAGTACTGCCCAAAACACAGTTGAATCTCGCGCGATATGGCACCCGCACTATTACTGCTCCCGCCACGCCCCCACACTCCGCGAGTCGACCGGCGGAGCCCGGCGACCAGGCCCACCGCCGGCTCCAGGTTGCACACCAAGCCCGGCGCACGTCAGCAGATCACTCTCCCCTCGGTCACTCTCGGTCAAATAGGCGCACTTGCGTTCACCTTCGACCATTGCAACCGCCGTATGGCTTCGACGATGTCCAATACGCCCATGAGCCGCGATGATCCGGAAAGCGTGTCGGCTTACGCCCGCCTGTCCCCCGCAACCCGCACCGCCTGGGGCAAGCACGACCGGCTGACCGAACAGTGGCTCCCCCTCTGGCGGCACATGGCGGACAGCGCCGCCGTGGCAGGTCGGCTCTGGGACGAGTGGGTGCCCGACAACGTCAAAGCGCTCGTCGCGGACGCGTTCCCCCAAGGTGCCCGGGACGCCCAGCAAGTGGCC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 171917-172860 **** Predicted by CRISPRDetect 2.4 *** >NZ_LISY01000001.1 Streptomyces sp. TSRI0261 scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 171917 29 100.0 32 ............................. TCGATGAACTTCGTCGGCGCAACGTAGGTCCC 171978 29 100.0 32 ............................. CCGCAGTGCGCCGCGCTCCCGACCCGCCAGTA 172039 29 100.0 33 ............................. ATGTACGCCATCCCGGCCGTGGACTCGCCGTCC 172101 29 100.0 32 ............................. GCTTTCCGGAAACGTCGATACCGTCCTGAATC 172162 29 100.0 32 ............................. GGGCGCTCCTCGATGTGCACCCCGTGGTTCTT 172223 29 100.0 32 ............................. CTGCACAAGGTAAGTCGCGGAAGAGGCTGGAA 172284 29 96.6 31 ............................G GCGGCACACCCGGGCGTTCGGCATGGGTGCC 172344 29 100.0 32 ............................. CGGCGCGTCCTGGAACTCGCCCTCACCGGCAA 172405 29 100.0 32 ............................. AGGTCACCCCGAAGGTCCAGCTCCTCGAACCC 172466 29 100.0 32 ............................. ACTTCCAGCCATCCGGCCGGATACCACCAGGG 172527 29 100.0 32 ............................. TGGCCCTGGGGAAGGGCCCGCACCGGTCTGGT 172588 29 100.0 32 ............................. GTGTGCTGCGGCAACTTCACCGTGGAGAAGAC 172649 29 89.7 32 ....C.............A..T....... AGGTCACACAGGGGCCCGTCTGCGGGTTCGTG C [172653] 172711 29 86.2 32 ..A.C................T..T.... TGCTAGAAATGCATCCTCGAAGGATGCATTAC 172772 29 86.2 32 ..C...........C......T..T.... GGCGACACAAAACCATCGGTCCCGATCGTGGG 172833 28 86.2 0 ..C....................-.A..G | ========== ====== ====== ====== ============================= ================================= ================== 16 29 96.6 32 GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : TGGTGACCGTCATCGTCCTCACCAACTGCCCGGTCGGCCTCAGGGGCTTCCTCACCCGCTGGCTGCTGGAAATCTCCCCGGGCGTGTTCCTAGGCTCTCCGTCCACCCGCATTCGCGACCTCCTGTGGGCCGAAGTCCGCGAGCACGCCGGCCAGGGCCGCGCTCTGCTCGCCTACCAGACGGACAACGAGCAGGGCTACGCCTTCAAAACCCACGACCACTCCTGGCACCCGACCGACCACGAGGGCCTCACCCTGATCCACCGCCCGAGCGTCCATGCCCGGCGGGCGGGCAGTCCGGAGAGTGCGACGGCCGACGTTCCCCAACAGGGCTGGAGCAAGGCGTCGAAACGACGGAGGTTTGGGGGCGGAAGGTAGGGGCGGCTACGAGGGCTGAAGCAGGCCAGCGGACACCACTGGACAGGATGATTCCTTATGCCCGATTTCAAAGAAGTGGGTAAAAACAGGCTCCTGCCCGCATAGAACACCAGGTCAGTGACT # Right flank : GTCAGCTCGCAGAGCCCTCGAACGGGTGACAGACGTGATTCCCGGACACCTGCTGGTTGCGCGCCAGCGCGGCGGGATGCGTCACAGACCCGTCTCGGACCTTGACGGAAGCAGGATGTAATGACCAGTGCGCCGGACTACAGCCAAGGCATCAACACCGAGCGCGCCCTTAAGTTCGCCGTGCAGCGCATTCGCGGGGACCGTGTCCAGATCATTGAGGGGATCATCGAACCGGTGTCACCGACGTGGGACCACGAGCGCGCTGCCAAACTCGTACGCCGGCAAATCGAGAGGCGAGTTGACGAGCTCGGCTGCGTGGAAGGGTCCGGGAATCTGGACCTGCCCGGGTCCTCGAACTGGTACGTCCCGGACATCGCTGTTGTGCCGGAGGATCTGGCCAAAGGAGGCAGCACCCTGCTTCCCGACCAGACGCTGCTGATCGTAGAAGTGACCTCCGAGTCGAACGCGGAGACGGACCGGGTCGTCAAGCGACGTAGGTA # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 670466-671581 **** Predicted by CRISPRDetect 2.4 *** >NZ_LISY01000005.1 Streptomyces sp. TSRI0261 scaffold5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 670466 29 72.4 33 .A...CC.T......A...GC.......C GTCGTCGGCACGGTCAGCAAGGAATTCCACGGG 670528 29 79.3 32 .C...A.A...AG............C... TTCGTCACCAATAAATACACCGCACTGTTCGC 670589 29 79.3 30 C....C....T.AA.........A..... ACGGAGGCGGCGCTGTTCGCGGCGTCGCTG 670650 29 93.1 33 .....C............A.......... ACGTACCTGGCGAACCAGCTGCTCCGGGTTTCG 670711 27 89.7 27 .....C......--............... TACGCCGAGCGCGGGATGTACGTTCAC 670765 29 89.7 32 C....C........G.............. AACGCGGTCGGCGCGTACGGCGCCTTCACCCG 670826 29 89.7 32 .....C..TA................... AAGTAGTCGACGGCGCGCAGGTCCCACCAGCG 670887 29 89.7 32 .....C.....AT................ CCGAGGAGCGCGGCTCCGACGCCGTCGCTGGC 670948 29 93.1 32 .....C....T.................. AGGCTGGCCGCCGCCGCGCGGGTGTCTGATCC 671009 29 82.8 32 .....C..T...G.C....G......... CAGGCCGGTTGGCCGGAGTACATGTCGGCCGT 671070 29 86.2 32 .....C.......A..........GC... GGCACTCCCTACGCGATCGTGCCGACGACGCT 671131 29 79.3 27 .G...C..T.G..C.T............. CCCGCCGTGGCTCTACACGGTAATCCC 671187 29 89.7 32 ..A..C...................T... ACCCGAGAGGTCGAGGCGGCGGCGGCCGCGGC 671248 29 100.0 32 ............................. GTGATGGGCGGAGCGTTCCGCGTCGACCGCGT 671309 29 100.0 32 ............................. CTCGGCTACCCCGACCTCGCGACGATCGCCCT 671370 29 100.0 32 ............................. CCCGCGTACGCCGACCCGCACCTCGGCACCCC 671431 29 96.6 32 .....C....................... ATCCCGCTCAACGAGTACGACCGGCTGCGGCA 671492 29 89.7 32 .....C.....A.A............... ATCAGCACGACGCCGTGAGCGTCGCAGATGCG 671553 29 93.1 0 .....C...................A... | ========== ====== ====== ====== ============================= ================================= ================== 19 29 89.1 32 GTGCTTTCCGCGCGAGCGGAGGTGAGCCG # Left flank : GAGCCGTTGCACATCACCGCCCACCCGCTCGCCACTGTACGAGGCCAGCACGGTTCCAAGGGCCCTGTTGCAAAACAGAGAATTCAGCATGCCCGCACGCAATTCGATGGGACGGCCCGAGTCCTCGACGCCGAACTGCTTCGCGAAAAGATCGCTACAGGCATCGGGCGCGGAAAAGCATATGGATGCGGACTTCTCAGCATTGCTCCCGCTTGATAAATTCAACCAGGTGCCGACCGAATCCGTGCCGGGCTCCTGGTCGCAGTGCTCCTACACGGCAGCGACCTCCACATTTCCTCCATGGCACCCCTTGCGTGGGAATGGGAATAAGCCACCTACCAGAGTAAGTGTTTATACGGAAGGTGGCGTTGTCGTCCGCGTGGGAAAGTTAATTGACCCGCTTGGTGTGAGTTGTCTGCGCGACTACCTCCGGTCAAATTCCGCTCGCGCGGAAAGCGGCGGAATGACGCCGAGCTTTGTAAGGCGAGGTAGCGAAGAGA # Right flank : GGTCCGCGACCTCAGCGACGGGGCTTCTGGGCGGTGGTGCCGACGGCTTCCTCGACCACCTCAGCGGCTTCGCGAAGGATCGCAGCGTGGCCCACAAGTTCGGGGTCGACCTGCGGCGAGGACGCGCAACTGGGCGGCAACTCCGTGGCCGAAGAACTGCCGCACGTACCTGCCCTCGAAGTACGCCATCACAGCATCCAGCGTGGTTCGGGCATCTTCAGTTCTCCTCGGGTTGCGGGCCGCCGTGCCGTACACAGCGGCCCAGGGGCGTTGGTTCGGCAGGTGGCACACGCCGTCGATCTCGCGGGGCGTCACGGTCTGGGTGAACAGGGGGACGTGAAATTGAGACCATCATCCAGATCGTCAATCCGTCGCTGCTCGACGACCTCCGCGAGCAGCAGAACACCGGGAGCCCTTCATGACCGACGCCTTGGTGGCCTTCCTCCGGGCGCGGCTCGACGAGCAGCTGGAGAAGGCCCGCTTCGCAAGCAGCACGGTGG # Questionable array : NO Score: 4.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.24, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTTTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [27-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 672384-672957 **** Predicted by CRISPRDetect 2.4 *** >NZ_LISY01000005.1 Streptomyces sp. TSRI0261 scaffold5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 672384 29 96.6 34 ......................C...... AAGCCCTCGTCCGTGTCTGGGTCGTGGTGCACTT 672447 29 93.1 32 ..T........A................. GTGTTCAAGGGCGCGGGATTCGGCAAGGTCTA 672508 29 100.0 30 ............................. CCGAACCAGCCCCCGCACTGGTCGCACCGC 672567 29 82.8 32 AA.......A..GA............... TCGGGGAGCCTCTGGCGGACCAGGGCGCCGTC 672628 29 86.2 32 .....AC......C.A............. GAACAACGGCGTTCAGCGTCGTAGCAGTCGGC 672689 28 86.2 32 ..............G.......C.-...A GCGGTCGGCGGATAGTCAGCGACGTACAGTGT A [672708] 672750 29 93.1 32 ....C..T..................... CCCCGGACCATGGGCGGTACGACGAATACGGG 672811 29 100.0 32 ............................. TCACTCGACTCCGTCCTCAGCACGGCGGCCAA 672872 29 75.9 28 .C.....T............A.ACG...A GCGGTCCGCGGACAGTGAGCGATGGTGT 672929 29 86.2 0 ....A..T...................GC | ========== ====== ====== ====== ============================= ================================== ================== 10 29 90.0 32 GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : GCGGGGCGTCACGGTCTGGGTGAACAGGGGGACGTGAAATTGAGACCATCATCCAGATCGTCAATCCGTCGCTGCTCGACGACCTCCGCGAGCAGCAGAACACCGGGAGCCCTTCATGACCGACGCCTTGGTGGCCTTCCTCCGGGCGCGGCTCGACGAGCAGCTGGAGAAGGCCCGCTTCGCAAGCAGCACGGTGGCTAAGGCCCCCGAGCGGTTCGGTGTAGATCCCGAGCAGGCCGCGGCGCATGCCCGGTTCTCCGTCGCCACCGCCGAGGTGCACCTCGCACTCCTGGAGGACACCGTCATCCCGCACCTGGGAGCAGGTGGGGCAGCCGACCGGACTGCTGAGTACCAGCTGCGGCTCCTCGCCGCCCCCTACGTCGAGCACAAGGACTACCCGCACGACTAGCGCTCGACGGCAAGTCCCCTGCCAAGGTGGTGACCTCGGCTACAGGTCACCGACGAAGTCGCCCCCTCCGCCGCTCCCCCCACGAGTTCCC # Right flank : CCCGTGACGCGGGCGGCCTCGTTCCCTGCCCCGACAAGGTCCACCGCAGCTACCGACGGCGGTACAATTCCCAATTCCACCGCTACGTGACCGTGGCGCTGGCCCACCGCGCCGACCTCACCAATGACCGCTCCATCCGGCCCGGGCTCGCCGCAGCCGCCCGCAGGGCCGCGATCTCTGCCGGGCCGCAGAACCACCACGGCGGCTAGCAGCCGTGTCGGCGGGCGTGAGCGAACACCACACCGCCCTCCCTATCCGGAACGGATAGGGAGGGCGGTGAGCGTAGCCGCCAGCCGCAGACCGGAACCCGACCGGGAACGCATCGTGTGAGACTCGACGGCCTGCGACGGGGTCAGGAACGACGTATTGCTCCTGACGCAAACAGCTGGACCAGGTCGAGGCGACGCGGACGGCCATGGCTGCCTCCGGCACGGTCTCGTCCCTGGTCTCTTGCAGGTTGCCGTGCCGGCCGCCAGCGTCGCGGCCCAGCGTCGGAACGA # Questionable array : NO Score: 5.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //