Array 1 44274-43591 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMEC01000022.1 Brasilonema octagenarum UFV-OR1 NODE_264_67615_cov_1.371033, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 44273 36 100.0 33 .................................... GCGTTTCATACACTAATTGTCTGTTTCTTTCAA 44204 36 100.0 35 .................................... TTTAACGGTCCGTTAATATAGCCCAAGTCGATATC 44133 36 100.0 33 .................................... GTTAGCGATGTCACCTACTTGAGCAGTTGGGTT 44064 36 100.0 37 .................................... ACGCATTCCTTAACGCCCTCTCTGACCTCAACATTAA 43991 36 100.0 37 .................................... ATTTCGTCGTTTTTTTTCGCGACATTATCTCCGCTGG 43918 36 97.2 37 ...........G........................ ATTCAACTCGTAATCCTTGGTTTTGCTGCTGTTGTTG 43845 36 100.0 40 .................................... TCTTGAGTAAAAAACCAGACATCGGAATTTTCGTTGTATT 43769 36 100.0 33 .................................... ATTAAAGTAGCATCGTTTTTTGCAGAAGGATTG 43700 36 97.2 38 ...............................C.... GGCCACCAGACTCCTTTGCAAGCTTGGTTATAATGCAG 43626 36 69.4 0 ....C...TA..TC.....C....G......CTT.G | ========== ====== ====== ====== ==================================== ======================================== ================== 10 36 96.4 36 CTTTACAAACCCATTTCCCTGCAAAGGGATGGAAAC # Left flank : CTATAACAATTACGTTAGCCAAGTGTTTATTAAAATTCTAAAGTTTGCACAAAAAACTATTTATAGCAATTTTTATGCACTTTGTCAAATGTTTTAGAAGTCTAAATATCATAATGCTTACATTTTTTTCTTTCCAGGACTTACGCAAAGGAAACGTAGTTGTGTCATTGCGACGTAAGGAAACAATCTCACAATCTTGTTTTTTCGTAACTTGTGCGTAAGTCCTACTTTCTTAAACACCACTAACAGGTTTTTATACCAAAAATTGACATTTACACCAACTGCTATTATTCTTTCTATCAAGTAGTGTAATGTTCATCTACACACTAAGCCCGATCCTTGAAAACCGCATAACTTCGTTGGAGTGTGTCGATGGCTTGCCCAGTAAGCTTTTCAGACGTCAAAATTGATTTATTCTTGTGAGAGTTTAATCACTTTTTCGGAGTGTGTCGATTTGGGGGTCTGAAAGTCCTTTCCAGTAAGGGTTTCAGGAGTGACCT # Right flank : AGCAGTCACTAAAAACTAAATCAATCAATCTTAAGTTTTTTGTTGAGGCGATCGCACTTAATTTTCATTGTCTAAAAAAGCAAAGATTCTTTCCGTAGCTATTTCCTTGGATTCAACTCTATTCTGTTAGGACTTACGCACGAGTTACGAAAGAACAAGATTGTGAGATTGCTTCCTTACGTCGCAATGACACAACTACGTTATTTTTGCGTAAGTCCTGTCTGTGTTCTTCTTAAAATCTCTATCCAAACAAAAAGCCTTCTCCAATCAGCCAATTTTTATACTAATAATTTATTAAGTCTTCTTTTGAAGATAAATCGCAATGCCTTGCAGCATAAGAAAATCTTATAAAAATATGCCCACCCACAACTTGTTTTTTATTTGTTACTGTTAATAATAATTAAATTTTTACCTTTGTTAAAACACTACTATGACTTTATACGCAGAATTACATAGACATCTGGGGGGTTCGGTTGTACCTCGTATTTTATGGCGGTACT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACAAACCCATTTCCCTGCAAAGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.90,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 35737-35268 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMEC01000026.1 Brasilonema octagenarum UFV-OR1 NODE_279_63783_cov_1.356201, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 35736 36 100.0 35 .................................... GTTAATCCCGCAGCGGGAATGGCATATTGGATCCA 35665 36 100.0 39 .................................... AATCTTTGCTACTACTAATCTACTCAATTCTAGTCTATC 35590 36 100.0 37 .................................... TTCAACTGTAGTACAATTTTCTGGTAATCTAGATTAG 35517 36 100.0 33 .................................... AGCATCATTCCGCTCATCAAACAACCGCGCCAC 35448 36 100.0 36 .................................... CATAATGTGTCCTTCTTGTCCTTTTTGCATCAAAGG 35376 36 97.2 37 .......A............................ GTGAGTTCTTGACACTTGACTATGCTTTGTTCACCTA 35303 35 75.0 0 ....C..TTG....AC....A-..G........... | T [35292] ========== ====== ====== ====== ==================================== ======================================= ================== 7 36 96.0 36 CTTTACAGAACCCTTTCCCTGCAAAGGGATGGAAAC # Left flank : TCTGCTTTATTATTCGCTGGATATCAATTGTTTAATACGGGTAAAGTCTTGAATTATAGTTTGCGATCTTTTAAGGGATTATTTAAGAGATAGTTATTATGGCGATCGCCCGCAAGGGCTCGGCTCCCTGCTGGAGCATCGCCAAGACAATCCTCGTCAACGTGATCCGATTCAACAGCTGATGTTTCTGTGCCAGTAGGCGACTTGTCTGGCTTTGTGGAGTTGATTGAAAAATGTTGAAAGAAAACCACGTACTTTGTAAAAAACTTGACAATCATAAGTGACATACTCTATTTTTAAGACAGCGTGTTGAGTTCATCTACACACTAAGCCCGATCCTTGAAAACCGCATAATCTCGTTGGAGTGTGTCGATGGCTTGCCCAGTAAGCTTTTCAGACGCCAAAATTGATTTCTTCTTGTGAGAGTTTAATCACTTTTTCGGAGTGTGTCGATTTGGGGGTCTGGAAGCCGTTTCCAGTAAGGGTTTCAGAAGTGAACT # Right flank : TTATTGATAAAACAGTTCAATACAGTCTTTAATATTACTTAAATACAGGCGGTTATCCCTCATAACATAACAGCCTCATTTAACACTCGTTCTCGAATGCACTCATGCAGAGTTTCAGATTCAGCCACATCTACTTTGCGTTTTAGCAATTTTTCCAGTGACTGTATCAAAGCAATCTGATCTAACAGAGTTCGTTTTGGCTCAATTTGTACCAGAAAATCCACATCACTATCTCGTCTTGCTTCTCCCCTAGCTACGGAACCAAAAACTCTGATATTGTAAGCTCCATGTTGAGCAGCAATTTGCAAGATTTGTTCACGATAAGGCAATAATAATTCATCAATTCCCATAACCGAATCCACACTGTATTTATCACTCATACTAACTCTTTATGAAATTGCACTTTGTTTACCTCCCGGCTACGCTGTGTTGAAATATAGCGCTTTTCATCCAGATGAAGTAGATTTTCATCTGCGTCGAGAGTGCGTTTATCTGCGGTT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACAGAACCCTTTCCCTGCAAAGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.30,-7.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 34346-33576 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMEC01000049.1 Brasilonema octagenarum UFV-OR1 NODE_405_47344_cov_1.408784, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 34345 36 100.0 38 .................................... ATTTTTAGATATCCAAGCCATAGCCTGGACTTTATCTT 34271 36 100.0 38 .................................... GTTTGAATATAACCCTTCTCCGTTATCTCCACTGTATT 34197 36 100.0 39 .................................... CAGCCATGAGCAACGACGTAAACGTGTTCACTAGAAAGA 34122 36 100.0 35 .................................... TGTAGTAGCTAAGCCTACTCCTGGTATCATAACTG 34051 36 100.0 37 .................................... TTTAACTGTGAACGATTGAGCAGTCAAACCTAAAATT 33978 36 100.0 35 .................................... TTGCGGTGTTGTCGCCAGGGCCAACCTGGATTTCT 33907 36 100.0 33 .................................... GTTTTGAAAACAGAAGGAATTTTCACTTTTCAG 33838 36 100.0 36 .................................... TCGACGGTGTCCATTCCAAGTTTATCTTGAAGAATT 33766 36 100.0 47 .................................... TCTTTCCCTAGAAGATAGACGGCGCCCACTTGGTACCCCCAATCCTC 33683 36 100.0 36 .................................... GTAAGAGCACTCATTTCTTCGACAATCTGACGTGTG 33611 35 75.0 0 .......-.TG.T......C.TC.G......A.... | A [33598] ========== ====== ====== ====== ==================================== =============================================== ================== 11 36 97.7 38 CTTTACAGAACCCTTTCCCTGCAAAGGGATGGAAAC # Left flank : AAGATTCGCATGGTTGTGGTTTTGCCAGCACCATTTGGTCCCAAAAACCCCAAAATCTCCCCTGGTTCGACGTCGAAAGTAACATCAGTAATTGCTGAGGTAGAGCCGTATGTTTTACTCAGATGTTCAACTGAAATCATCCGCTTTAGCTACGTGCAAATGGTAATTCATCAAACCATGATAAAACAACAAAACAGTTCTGAGCGTTGAGCACTGAGGAGCTACTGCATCTTTGGGTGTGGAGTCGGTCAAAAACTTGACAATTATAGGTGAGACATTTTATTTTTAGGGAGTGGGTTGAAATTTTATCGACACCACTCCTCCGATCCTTGAAAACCGCATAACTTCGTTGAGTGGTGTCGATTGCGCTTGTAGCAAGGTTTCCAGCTTACGAAATGAGAGTTTTATTGAGAAGAATCTTGCCCTTATTGACATTTAAAAAAGTGGTGTCGATTTGGGGGTCTCAAACTCTCTCCCAGTAAGGCTTCTACAAGTGAACT # Right flank : GACTTATGCCGCTAATTCCATTGTTAAAACTCACCACTCAAACTGAGATCTTGCACTTGTGCCAACAACCGCCTAGGGTTTAAACCCGCCTGCTCATAGTAAAAGTCGTCTAAAGACGACTGCATAAGCTTTTGAGTCTACTTTAGTAGACTTGAACTGTGAGCCTGGGAATTGATTCCCAGGCGGACGAGGTTGCGTTCTTGAGAATGGTGCAAGATCTCAGCGTTTTTGATAACCTCTTCCCCCAACGGGGATCAAAACCTCAATAAACGTAAAAAAGTTACATAGGTGTGCTTGTGTAAACGCAGTTGTAGAGTTATTTATGATTGTGATATTCAAAATTTGTTTATTCGTCACTAAATGGTCAACTCTACCGTCGTTGCCACACTTACAATTTATGTCAACCCTACAATTGGCAATGATGCCAATGCTGGGACACGGTTAAATCCTTATAAAACAATTACCCGTGCCCTGAAGGTAACCACAACACCCAAAGTCAT # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACAGAACCCTTTCCCTGCAAAGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.30,-7.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 11421-11753 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMEC01000074.1 Brasilonema octagenarum UFV-OR1 NODE_557_36977_cov_0.979524, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 11421 37 100.0 38 ..................................... TTGCATGATTTTGTTAGTGAAGATTTTCAAAAGCAGAT 11496 37 100.0 36 ..................................... TCTTTGAGAGAAAGAAAATGAGAATCGCCCATCCCT 11569 37 100.0 36 ..................................... CATCCGGACATTCCCTCTCCTCTGAATAAGAGGGAA 11642 37 100.0 38 ..................................... GACAAATGGTCTATTTTGGAACGTCAGCCCACCTTGAG 11717 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 100.0 37 GTTTCAACGCCCCTCGACGCTTGAGGCGGGTTGAAAG # Left flank : ACCTTGAAAATAAAATAAGAGTTAGTAATAGCGCCGCAGTTCATGCTTGTTACAAGCCTCTGTACTGTGTAAATGTGGGTTAGTTTGACTGTTGTCAAACAGTTTTGCTTTCTGACCCTGGTAGCTGCCCACCTTGAAGCTGCTATCCCTTGTGGATAGGAATCAGGTGCGCCCCCAGTAATAGAGGTGCGGGTTTACCGCAGTGGTGAGTCCACTTGCCGGGGAGATTTTCTTTCCGGCAAAGTGGCGAACCCGAAGGGTGGCTACTGAATCACCTCCGAGCAAGGAGGAACCCACCTTAATTATTTTTTTGGCGAATCGAAGCGGAGTCAATTTCCCTGGGGTTGCTGCCAAATCTTCAAATCTGTTTGTTGGCAAGGTTTCTAGGTTGTTATCTGTCACTTGATTTACTTTTTTAAGTTTCAAGTAGCGAGTGATTTTGGTTGGTTTGCCAAAAGTGCTTCTAGAAGTCTTGATAAATAAAGGGTTTTAGGCGCGGG # Right flank : GTCAAGAAATTTGGCACGAAATTTACCGTCGATTCTTTGTTTCAACGCCCCTCCTAGTAGTCCACCAAACTAATTTTGCAGGGTGATACCGATTATTGATAAGCTACTTCCACGGTTTAGAAGGTGGTATAATCGTGAAAAAATACATAGTGGACTTAAATGAGACTGAGATTTCCCAACTGCGATCGCTAACTAAAACAGGTAAGCATAAGGCACGAAGCATCACCCGCGCGAACATTCTTCTAATGGCGAGTGAGGGTTATTCAGATAACGTGATCGCTTCTACCCTACGAATTAATGTTTCAACTGTCGAGCGCACGCGTGAAAAATTTGTGCTTGGGGGATTGGAGTATACACTTCAAGACCGCCCTCATCCCCCGAAGCCTCGTAAACTTGACGGTAAGCAAGAAGCCTTTCTTGTTGCTACAGCCTGTTCGACTGCACCTGAAGGACGAACGCGTTGGACAATGCAGCTTTTAGCAGACCAACTCATAAGCCTT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACGCCCCTCGACGCTTGAGGCGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.00,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 2 33522-36486 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMEC01000074.1 Brasilonema octagenarum UFV-OR1 NODE_557_36977_cov_0.979524, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 33522 37 100.0 34 ..................................... AAGGTTGGAAAGTTCTTTGATGAGATCAGCTAAA 33593 37 100.0 37 ..................................... AGGTGAATTATTCCCCAATGTTTTTGGTACATCAGGC 33667 37 100.0 36 ..................................... TTATTCATTGAAGTTTGTTTTTTTTCTGATATTTGT 33740 37 100.0 34 ..................................... AAATCTATCCCTACGCCTAACGCATCATTTAATT 33811 37 100.0 40 ..................................... TTTAAGTCAATATTTGGCGGCGGCTTCAGCATATTACCAT 33888 37 100.0 38 ..................................... GAATCGGACGAGTTTCCCAGTCTACGGTTAAGCTCTAC 33963 37 100.0 41 ..................................... TAGAAAAATTTTTGCACACAGTGAATTTGACAAAATTGGTG 34041 37 100.0 37 ..................................... GTCTTCATACTATACCTAACGCTCTAGACTCAAGTAT 34115 37 100.0 36 ..................................... TAAATACTTCTGTACCTGACTGGGGACAATACCATT 34188 37 100.0 40 ..................................... TTTAATACCTCATTATGAAGGGCTAATGACTGAAGAGTTG 34265 37 100.0 35 ..................................... ACCATAAACCCGTCCGGTGAAGTGTCTCTTAGTGG 34337 37 100.0 38 ..................................... AAATGACAAAACCCTGGGGAAGGAATAAACCCAACCCA 34412 37 100.0 40 ..................................... TCTACTACCCAGCCTGTTCTGGGAACTTTTAGCCCGGTCG 34489 37 100.0 35 ..................................... CCAAGAATCAAAGAGGGCTACAACCTCAATAAATA 34561 37 100.0 38 ..................................... ATAGGTAACACTGATGTACGCAGGGTAACCTTAAGTGG 34636 37 100.0 37 ..................................... TTACAAGATAAAAGACGCCAGCGTTTTAGAGACAATT 34710 37 100.0 33 ..................................... TTATCTTGAGTGTAGTCCCACCAACGACTAACA 34780 37 100.0 35 ..................................... ACGTCTGGTTGATGCACGATGGAATTGTACAGCTT 34852 37 100.0 35 ..................................... GTCTAAAGGTCTCTGAAGTACTTCCCAAGAAACTT 34924 37 100.0 37 ..................................... AAATAAACAACCGCACCTCCACCACCTCACCATTTAG 34998 37 100.0 34 ..................................... ATAACTCAAGCAGACCATGATCAACCAAGCGATC 35069 37 100.0 35 ..................................... AACATGGGCATATTGACGTCGCAAAGAACAGGAAG 35141 37 100.0 37 ..................................... CAGCAACCCAGCTAACAACTTAAATCGATCAGCCCTA 35215 37 100.0 35 ..................................... ATCAATGACAAATTCAAAAGACAGTACGAAGCAAG 35287 37 100.0 34 ..................................... TCAACAGAAGCAAGCTTACAAGACCGAACTCAAG 35358 37 100.0 33 ..................................... CTGATTCTGGAACTTTGGAACCCGAACTAAAAC 35428 37 100.0 34 ..................................... CTGCTACCGTGTAATTTTCCGGGCGATCGCTTCT 35499 37 100.0 34 ..................................... TTCATAGCGATCGCGCATCACCAGATATTCCAGC 35570 37 100.0 34 ..................................... CAATTAATAAAAATGACATTTTTTAGCCGAGAAC 35641 37 100.0 38 ..................................... TAGCCTATCCAAAATATCTCCCGAAAAAATAGAGCGTT 35716 37 100.0 31 ..................................... AAACACCAAGCGACACCTATCCTCGTCGGAA 35784 37 100.0 41 ..................................... TTGAACTGCGTCTACTTCCTTAAAGTTCCGAATATCTGTGA 35862 37 100.0 35 ..................................... CTGGGATGATTCTTTCCACACCTTCAGGAGCGCTG 35934 37 100.0 35 ..................................... TTTGGTCTTGTCGCTTCTTGGTATTTCTCGGACAA 36006 37 100.0 37 ..................................... CCGCGTAATCCAGCTACTGGCAATTCCTGTATTTTTA 36080 37 100.0 32 ..................................... TTAATAATGTAGACAAACAGATAGCAATCGGT 36149 37 100.0 40 ..................................... TTCTTTTGAAATTGTATAGAGCACACTTAAGTACTCTGGA 36226 37 100.0 35 ..................................... ACAACCCAGCGAGAAGTCTCAAAATCAGAGTCATC 36298 37 100.0 42 ..................................... AGCTACAGCATCAACCACAACTGGTGACGAACCTGAAATGTT 36377 37 100.0 36 ..................................... AAGACTATTCCCTTGCAAATCGCAGGTACGCTCAAG 36450 36 81.1 0 .......G..........-........AT...A.G.T | A [36475] ========== ====== ====== ====== ===================================== ========================================== ================== 41 37 99.5 36 GTTGAAATTTCTCTTACTCCCTATTAGGGATTGAAAC # Left flank : GTTGAGAGAAGATAGTGGCTTAGCCCTGATTTTGTTAGAAGATTTAGGCTTGCAGTTGCCAATGTTATTTAAACGTTCTGTGAATTTGGGCGAACAGATGTTAGTGAAAGTCCTTCATGCTGATCCACTTAGAGACGTGATTCAGTTTCAGGAAATTATTTATCAAGAAGCCCAACCTACGGCGAATTCTATGTAATTCCATGCTGTGTGGCTGCTGTTCTTGTAATGATGGGTGGTTAATAACCTTGCAATAAGATGATTTTTTTAGCCGATGGCGCGGATGGGTAGGTGTAGAAAAATGGGTTTAGAAAAAAATGCTTGGATGGCTTACAGGACAAGGATTTCGGAGAAAATTATTTTATAACCATCCGCGCTCTTTGCCCTGACTGGATTTCAGCGATTTACCTGTCAATTAATTTACTTTTTTGCATGTTATGATCAGAGCATCCGCGCTTTTGAACCTTGAAAACTTTATATGGTGCAGTTTTCTGAGTGCCGCA # Right flank : ATTAAGATTTTAATGACTTTTAATGCAAAAAAATATAATTCCAGAAAAAAGCTATAGCTAATTATTAGAGGAATAAATTCAAGATTAGCTAAAAATCTTCTCAAGAAAACTATATTATTTATTGATGTAATAAGAAAGTAAATCCTTACCACGTAAGGATTTGAAAGATTTTTGACACATCTCGTTTTAAACTTAGATTTATCTAAGTTGATAAAAAAATACTTTATGATTCAGGATAACCGCACTACGGTACGAAAGGTTTTAATTATTACTTTACTGCTGAATATATTCGTCATGGTGTTAAAAGCTGTCGTCGGAAACTTGACAGGTTCTCTGAGTTTGACAGCTGACGCTTTACATAGTGTGACTGATAGCGCCAACAATATATTAGGATTAATTGCCAGTCGGTTTTCTTCCCCAAGACCAGATCGGGATCACTCACATCTTGCACCTAACCGAACAAACCCGTAAAAGGCAAATAAGGAGTACAA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCTCTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 25896-26805 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMEC01000097.1 Brasilonema octagenarum UFV-OR1 NODE_643_32079_cov_1.366725, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 25896 37 100.0 35 ..................................... AATATTTCTGCAAGGAGTAACACCTTCTAATGTTT 25968 37 100.0 38 ..................................... CTTGGGCATCATCGAAGTGGCTAGGTATACCTAACACG 26043 37 100.0 31 ..................................... ACAGCTAGATGAACTCATTGAAGCCAGCTAA 26111 37 100.0 37 ..................................... TTAGCAGCTGTAGCTTTAGCTGCTGCGGTCATCAGTC 26185 37 100.0 39 ..................................... ATATGATCTGGAGGGCGAGTTACCCGGCAGTGTTGCCCG 26261 37 100.0 37 ..................................... TGGCGTAGCGCCTTTTATCCAGGTGCCTCGCTCTGCT 26335 37 100.0 38 ..................................... AGTACTTTTGGCAGCTTATATATTATGAGCAATGTAAG 26410 37 100.0 39 ..................................... TTTGTTTGTGGGTTGTTGGGTGGTGATTGAGTAATGGGT 26486 37 100.0 36 ..................................... GTTGCTATTGCTTGCACTGCAACAGAAGATGATACC 26559 37 100.0 34 ..................................... TCAAGATAAAAACTTACAATTTCTTGAGCTATAT 26630 37 100.0 32 ..................................... GAGTTGTTTTCAGCCGGAGGGGGAATCGCCTG 26699 37 100.0 33 ..................................... AGCAAATCGATGCTTCCCGCTGGAGTGTAAACC 26769 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 13 37 100.0 36 GTCGAAATTTATCTTTCTCCCTATTAGGGATTGAAAC # Left flank : GTCGCTTGTACCGTGTGGAAGTGTCTGCTCTTTTAACTCCCAAATATCCGCGTGTACGCCGTAGCAACAAAGCTGTTGTCATTCCTTATGAACAGCTATCAGATTACATGCAACGGGTGCAACGCGAAGGAGGCAAGATTGCCAGCATCACACCTTTGTAGTCCCCTTTGATGAGTCGTCCTTTAGTGGAAAAACTACAACCGGTAATCAGTTATGGAACCTTCCAACTGCTGATTGCCGATTTTCTGTAATAACAGGATTTTCTTTGCCCAATGCGCGGATGGGTAGGTGTTGGAAAAAGGGTTAGAAAAAAAATGCCTGGATTGCTTACAGGATAAGGATTTTGGAGAAAGTTTGTAATCAACCATCCGCGCTCCTTGCCCAGACTGTATTTCAGCTATTTACCTGTCAACCAATTTACTTTTTATGATGCTATCATTAGATCATCGGCGGTTTAGAACCTTGAAAACTTTATATGGTGCAGTTTTCTAACTGCCGCA # Right flank : CTTAAATTTTGCAAACTTTCATAATTTATTTCTTTCCAGCAAAGAAGTACCTATAAAGTAGTGGACTACTATTCTTATAAAGCGTGTTGAATGTCCAGAAAAGGATAATCAATATCTAATTGCCAATTTTCATCTATAAATTCTAGATTTTCATCATAAACAAGTTCCAACTCGCCAATACGCAGTCTGTTATGATGACTTAAATTACCTTCAACATCATTTCTATAATCTGTGAGGATAAACTTCAATTGGAGAAAGCGTTTCTTCTGTGTTACGCCAATGGAACTACGAGTTAATTCAGCTTCGAGGGTGCGTGGTAGGGGAATTTATTCATAATATTTATCTTGCTCATCCCAATAACCGGATACTTTATAATCACATAAACAGAGATGTTCTTTAACAAGTGTATTGGCATCTATGTTTTGTAGGATTTCAGTAAAATCATGCCAAACTTGGTGATTTTTTAATTCAAGGTTACTCATATCTGATTTTGGATTAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAATTTATCTTTCTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 16684-18966 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMEC01000141.1 Brasilonema octagenarum UFV-OR1 NODE_995_20857_cov_0.947842, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 16684 37 100.0 37 ..................................... AACATCACAAATTCATCTCCACTATTTAGCTGAGACA 16758 37 100.0 39 ..................................... AAACGCCAATTTAAAGCGCTCATCCCCACGGTATTATTT 16834 37 100.0 35 ..................................... TGTTTAGTAGTTAAAGAAGCGTACAGATCCTGGGT 16906 37 100.0 39 ..................................... TTGTCATATATCTCTACAATAATTTCCGTGAGAATGGGG 16982 37 100.0 34 ..................................... ATATTCAAGATATGCCACTTAAAGAACGGATTTA 17053 37 100.0 34 ..................................... GAAATTTCATCTGGGTAGGCTTTTGCAAAATCAA 17124 37 100.0 35 ..................................... AGTTGTAGTAAGTCTTGTAGGTCGGTGGGGGTACT 17196 37 100.0 35 ..................................... TACTTCCCTGAACTTGATATAGATACCGTACTTAG 17268 37 100.0 34 ..................................... TAAAGCTAAAATGACTCGCAGTCTGGCTGGAAAC 17339 37 100.0 34 ..................................... TGAGTTTGCCGAAATAACTCCTACGGGAACTTGG 17410 37 100.0 36 ..................................... AGGAGAGTTATTCTCCAATGGCAGCATGACCTGAAG 17483 37 100.0 34 ..................................... TGTTGCTTAACCCTTTTACCATTCTCGTTGTAAT 17554 37 100.0 35 ..................................... GTATCTGTAGACGCTGTGGAAATATCAGTAATGAC 17626 37 100.0 36 ..................................... AAAAAGTGTATCCGGCATTGCCAAGTCTCTCACAGG 17699 37 100.0 33 ..................................... TCTTCTATTAACTCTAGAACTCTTGCTTCATCC 17769 37 100.0 35 ..................................... AAGTTCCTCAGGGCTAAGTCGACGACCGGTGGACT 17841 37 100.0 37 ..................................... AGTTTGAAACAGTTGGCTCAACAGGTGGCTACTGCGC 17915 37 100.0 35 ..................................... GAAGTATTCGTTGTTGTTGAACACTTCTTCCATGT 17987 37 100.0 34 ..................................... TATTAGCATCAAAGGTAGTCATTGATACATCATT 18058 37 100.0 36 ..................................... TGTTATTGAAGGGTATTGCAACGTCATTGGTTCAAA 18131 37 100.0 37 ..................................... AGGAATGGAACGTTGCATGGGATAACAATACGATTTG 18205 37 100.0 34 ..................................... ATCAAAGCCTTGACCGTCTGACCTATCAGGAGTA 18276 37 100.0 37 ..................................... CTGATTTCGATAAAGCTGCTTTATCGAAATTTTCATC 18350 37 100.0 34 ..................................... ATAATGGTCGCACCACACTCATAAACGGAGATAT 18421 37 100.0 35 ..................................... CGGAAGCGATCGCAGCAAAACTCCTTCACCAATCG 18493 37 100.0 35 ..................................... AGATTGACATTAGTGGCGAAGTCATTGCTATAGAA 18565 37 100.0 36 ..................................... TTTTAAATCCCTTTTCCAATTAAATAAATCGGTATT 18638 37 100.0 33 ..................................... GAATGCGATCGTTATTGACCCCAATGGTATCTC 18708 37 100.0 38 ..................................... CGCGTACGGGAGAATTACTCGGTCTGTGTTGCGTGGAG 18783 37 100.0 38 ..................................... AATATCGCAATCGCTCTTCAGCAACTGCATTACAACTC 18858 37 100.0 35 ..................................... ACTAATGACATAGCTTTTATTTCCTTACTTGAATG 18930 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 32 37 100.0 35 GTTGAAATTTCTCTTACTCCCTATTAGGGATTGAAAC # Left flank : AATGAATGTTGTTGTGTCCTACGATATCTCTGAAGACAAGCGCCGTACAAAAATCCACAAAGTCCTCAAGTCTTATGGGCAGTGGGTGCAGTATAGTGTATTTGAGTGTCAGCTGAGCGATACTCAATATGCCAAGTTGCGATCGCGCTTACACAAACTTATCAAGCCTGATACCGATAGTATCAAGTTTTATTTTCTGTGCGCTTGCTGTTTTGGTAAAGTCGAACGTATCGGCGGCGAACCACCCCGTGATGAGACGATTTTTTTTGCCGAATGCGCGGATGGGTAGGTGTACAAAAAGAGGTTTCAAAAAAAATGGCTGGATTGCTTACAGGACGAGGATTTCAAGGAAAAATTATTTATAACCATCCGCGCTCCTTGCCTAGACGGAATTTCAGCCATTTGCTGTAAATTGATTTAGTTTTTTTCATGCTATCATTAGATTATTCGCGCTTTGGAACCTTGAAAACTTTATATGGTGCAGTTTTCTGACTGCTGCA # Right flank : CATCTGTATTTCAAGTTTTGATAAAAAGCATTAAACTGTTTTATCTCTTACTCTGTGCCCTCTGCGCCTCTGCGGTTAAAAATACTATATTCAACTTCCGGCCATTTTCATCGTGCTATATTCAGCTTCATCTATTGCAGTTCGCCATACATCGTAAGCTTGTGTGCTCAAATGAAGCCCGTCTGTCGTCAGTTCTAAACGTAAGTTACCCTGAAAATCTGCAAACCAATCATAAAGATTTAAATAATAAACCCCTTCTTGTCTTGCAATCAGGGAGAGTTGCTCATTGAGATGACGAATGCGAGTATTAGAAATTGTAGATAAACGAGTTGGCAAAATCGATTGAAGAAAAATTATGGTTTTTGGGTGAGTGTGTCGCAACTTGCGAACAATTTCGCGGTGATTGTGTAAGATGATTTCATCTGTCGTACCCTTTCGCAAATCATTAATTCCAACCATGATATAAATGAAATCTGGTCTGGTTTCCCTAAAAACAGATA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCTCTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 7305-6317 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMEC01000005.1 Brasilonema octagenarum UFV-OR1 NODE_122_109260_cov_0.531624, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 7304 37 100.0 34 ..................................... TTGGATGGAATTATGTAAGAGTTACGCCTTAAAA 7233 37 100.0 36 ..................................... AAGAAGAATCAGAAAAGTAGCTGTAGAATAGAAGAG 7160 37 100.0 34 ..................................... ATTATTTGAGATGCATTCGGCTAGTTTGTTTACC 7089 37 100.0 36 ..................................... TGGTAAACGTTCGCCGCAGTTATTAATCCAAAACCA 7016 37 100.0 38 ..................................... TTTGATGAATTTCAAACTGAGTTCGGCAGTGATTCTAT 6941 37 100.0 35 ..................................... TTTGTATATAAGGTAAATCTTGTCTACTGTCTACA 6869 37 100.0 35 ..................................... GCTGCTGAAAATCTCAATGAAAGCAAATCCGAAAT 6797 37 100.0 36 ..................................... TACTTAGTAATGTTAAGGTACAGGCTAGATTACAGG 6724 37 100.0 36 ..................................... CCAAAAGCCTAAATCCCGAAAAGTATCAACTAAGAG 6651 37 100.0 34 ..................................... AGTTCGAGAGAACGGTCTTGAGTTTGCTGGAACA 6580 37 100.0 36 ..................................... TTCCCCCATAGACACGAGAATAAAACTATCAATGGC 6507 37 100.0 41 ..................................... GCTCAATTTGATGCGCGATCGCACACCATAGTTTTCGTTGA 6429 37 100.0 39 ..................................... AATAGAACATCAGGATATTGCTTGTACAGGGATTCGCAA 6353 36 75.7 0 ........C.CCC.......CC-.....A...A.... | C [6340] ========== ====== ====== ====== ===================================== ========================================= ================== 14 37 98.3 36 GTTGAAATTATTTATTCCCCGTTAAGGGGATTGAAAC # Left flank : GATGCCCCATTTTTTGTTTTAACTGTAAAAGGTGCTGGCAGCAACTGTGAAAAACCATTTGGCACGTTACAAGAAGTTGATGGGATTTTTGCTGAACCAGGTACGCATTTGATCAGGGACTACATCAGAACTCGAACGGCTTTCAGATTAATCCTCCAGGGTATGTACAATGAATTAAAAGATCCACAAAGCTGGAAACTGACTTATCCACGTAATATTACTCCTAATAAAACCTCAGAATTTTGAAAGACTGCGCGGATGGGTAGGTGTTTGAAAAGTCAAAAGGACATTTGCGGCTCAAAGGCTTATCAGCTCTGAATTTGAGAGTTTTTCAAAAAAACGGCATCCGCGCAATCGCTAGAACCTTTGCCAGGAGTGAGTTTGAGGCTATTTTGAAATTGGCACTACTTGACACCTGATCGCTGAAATGGTACTTTTGTTATACATCCGCGCAACCGCACCTCGAAAACTGAATTGGTCATGGGTTTCATATGACAGCA # Right flank : CAAAGTAAGAGTTAAAGCGAGATATTTTATCTAATATTGAAAATAATTGCAGATGCCAACACCAACATTGATATGCTTACCGATACTCGTGCAGCAGAGAAAACCAATCATTCTCGCCAAAATGTATTGATTGTTGGGGGAGGTCCAGCAGGACTTGCCACAGCATTAATGCTAGCCAAACGTGGTTGGACAAATATTACAGTTTTGGAAAAACGCGCCACTGCTGATTACTATGAACCCGACAAATCATTCAATTATCTCATTGATGGTCGGGGTCAAAAATTTACTGACTTCCTTGGAATAACTGACAAGCTAATAGAAATCAGCGTTCCCAGTAAAGAATTTTATCTAACAGAAATCAAAGCCAACGGAAGCAAAAAAACATTTAAACTACCTTTTGTCGATCCAAAGCAAAAAACAGCTTACTGGATTCCCCGAAGGGCATTTGTTCTTTTGCTATATCAAGAAATTGAACGTAATTGGCAAGACAAGATCACTGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTATTTATTCCCCGTTAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 10518-10763 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMEC01000182.1 Brasilonema octagenarum UFV-OR1 NODE_1379_13435_cov_1.171824, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================== ================== 10518 28 100.0 45 ............................ AGTACTTACATCTCCATCTGTGATAGCGACGATAGTGGTTTCCAT 10591 28 100.0 46 ............................ ACAGATACCATTACTTTTTCAGAGCAAGACCCTGAAAAGTTTCCAT 10665 28 100.0 43 ............................ TCGGAGTTTTGAAAGATGGGACGTTTCTCTAAAAAGTTTCCAT 10736 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ============================================== ================== 4 28 100.0 45 CTCCTTGCGGAGAAGAGGTAGTGGAAAG # Left flank : TATATCCTTAGTTTCCCATTCCACCACACTAGGATAATCAGCATCAGAAAGACGCACACGGCGGTAAGTCTCAATGTTGGGCAATATTTTGTTCCAAATTCCAATTCCTTGGAAAATGAGCGCCGAAAGCATATGCACCGCATAAGCTTGTCCTTTGGCTACCGCCGCTGATTCTACTTTTGCTTCTACCAGCAGCACACTTAACCCGGAATCTTTCAATGCAGAGGCTAGGGTTAAGCCAACAATCCCACCGCCGACGATGACTAAATCATAATCATATCCCCGCGTCTGTGTCGGTGTTTGGGGAGGGTTAGGGGTTTGAAGCTGCGCTTGCGCCATTGTTAAGATAAGTTACAGCGTTTTCATTCTTATTTTGACGCAAGGGGGCTAGGAAGAGCAAGTTGAGGAGATGTCAGTCTCGAATTGCCAGAATAATAAGTGTTTTTGAACCGCAGAGGCGCAGAGGACACAGAGAGAAGAGGTAGCGGAAAGAAACTGTA # Right flank : GAGTTAACTTCTGGAAACCTTACTGGGTGAGACTTTCAGACCCCCCAATCGACGCATCTCGAAAAAGTGATTAAACTGTCTCAGAAATAAATTAATTTTGAGGTCGCAAAAGCTTACTGGGTAAACAATCGACACCAGTCAACGAAGTTATGCGGTTTTCAAGGATCGGGTGAGTGGTGTCGATAAACGTCACACACGCTGCATAAACTATAAGAGCATTATCGTGTGACCGTAAACTTTTGGTATAGAAACTTAATTGTGTATTTGGTGGATAATAATGTTATTACAATAGTATTACCCTAAGAATGCAAGAGATAACTATGTATACGTTAAAAGTTCGTAAAGTTGGAAATTCTTTAGGAACTACCTTACCTAAAGAAATTTTACAAAAACTGAGAGTTGACGAAGGTGACACCATATTTGTAACAGAAACTGCTGATGGTGTTTACCTCACAGCTTCTAATCCTGATTTTGAAAAAGCGATGGAAGCATACAAGAAA # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTTGCGGAGAAGAGGTAGTGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //