Array 1 1896-1748 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKXQ01000014.1 Acinetobacter bereziniae strain TUM15540 sequence014, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1895 28 100.0 32 ............................ AGTAAACAGTAGAACCATAAACGAGTTTAGAT 1835 28 100.0 32 ............................ TTTGACAGAAGCAAAGCGAGCTTTAATGAATG 1775 28 82.1 0 ...................A..C.ACG. | ========== ====== ====== ====== ============================ ================================ ================== 3 28 94.0 32 GTTCACTACCGCATAGGTAGCTTAGAAA # Left flank : TATATGTAATAAGGGTTTTAAGCGAAATCAGTAGCTTAAAGCCCTTTTTTTATGCGTATAATAATATGTGATAATATCAGCCTACTAGGTTTAAATGGTGAAATTAGCCGATCTAGCCGAATAATTTACGTCAAGATTACGTCAAGCTTTTGAGTTTAAGATAATGAAAATACCAAAACCAAGAAAACGTGGTGAAGTTTGTTTTACTAAGAAAATAACGAAATATAAGATTTCTTTATTCTCTAATGATAAAGTAAATGAATGACATTAAAAATATGTGTGAATATTGGAAAATCTTTTACTGATAAGATAAAAGTAGTTGATTTTGAATATAGGCTTAGTTAATCAAACAAATATTCTAAAAATTTCCCCCAATATTTTTAGTTCTTTAATAATTCAATAAAATCAATAAGTTATAATGGCAGGTGAAAACTTGGGTCATTTGATGATTTTTAGGTTTAACTTACTGTTATTATTTTATTTTTTGTTTTAAAATTATA # Right flank : ACTTAAAATTAATTGGATATAGGTTTAGTGTGACTGTAAAAGTCTAATCAGTTGAAAAATTTCAATATTATATTTAAAACAAAATTTGACAAAATGAGCGACATAGTCTTTGACATTATTACAATTAAAATTTGACTAAATTTATGATTTATAATAATAATGTTTTGACATTTCATTTGACAAAAAAATTGACAAAATGCCTGATCAAAGTAAAGTTTGGCTAGATGACACAACTTTAAGAGTCATGACGTACAAGTCAGGCTCTTTTACCTTTCAGCTTGGGTTTAACTTAGAGCAGGTTACACCTATGCTTGATCGTGTAAACGATGCACAGAATAGATTTAATAAAATGCCAAGTTTGCCTCAAATTATAGATCAAGTACAAGAAAAGGTTTTAGCGAGTAGTATTTATAGTACAAATACCATTGAAGGTGGGCAATTTACAGAGCAAGAGACGAAGGAAATTTTAAGATTAGATCCTAAGACAATACAAAAGACCG # Questionable array : NO Score: 5.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGCATAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTACCGCATAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 123279-122591 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKXQ01000004.1 Acinetobacter bereziniae strain TUM15540 sequence004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 123278 28 100.0 32 ............................ CTGGTCAATGTCCTGCACCTTTTACAACAAAC 123218 28 100.0 32 ............................ TAAAAAATTATTACTCTACGCAGGTGGTGCAT 123158 28 100.0 32 ............................ AGCGGAGCGCAAAATATATTTGTAAAAAAACC 123098 28 100.0 32 ............................ ATATCCAAGTACCAACAAAACACGGTCATGGA 123038 28 100.0 32 ............................ AAGATAAAACACAGAATCAGCAACAGAGCCAA 122978 28 100.0 32 ............................ ATCTGACGCTATAGCATTCATATGCTTATATA 122918 28 100.0 32 ............................ ATGCAAGTTCAATTCAATACACGCACAATTTT 122858 28 100.0 32 ............................ GACCACAAACGTGTTTATGCCCAAGTTCTAAA 122798 28 100.0 32 ............................ AAAGTTAGAAATCTATTTGCTATGTATTGCCT 122738 28 96.4 32 ...........G................ CCCTACGCTTTCCACGTCTGCAATGGCTTTGC 122678 28 100.0 32 ............................ TCATTGATGTTAAAGAGGGTTACAGTCCAACA 122618 28 92.9 0 ..C..................C...... | ========== ====== ====== ====== ============================ ================================ ================== 12 28 99.1 32 GTTCACTACCGCATAGGTAGCTTAGAAA # Left flank : TCCAGAAACAGACTTGGAATCATACATAATTCAAAATTTTATTCTTATAAAAACAATAAGCACTATTTTTGATGAAATTTACGTTATAGCACTAGTTTTTATTGAACTTTAACATCATATAAAAATGATCTTTTTTAGCAGTTTATTGAGCTGCAAAGGAAGTATGTATTATCGTTTGCAAGATAAATTAAATTTTAAATATTTAATTGATAAATAAATTATTTTATATGAGGTATGTCGTATGATTCTGAGGAGTGAATCTATTAGAGTTTGTATTATATACTGCTATAACTTGTTGCTGATGAGGCAAAAGTGAACAATTTAGGGAAATATGCTTTTAATAGAATTACGATTGTTCAAATATTTTAACCCAATATTTTTTTACTCTTTAACAACTGAATAAAATCAATAAGTTATATTGGTAAGTAAAAACTTGGGTCATTTGATGATTTTTAGGTTTAACTTACTGTTATCACTTTATTTTTTGATCTAAAATTATA # Right flank : AATTGTTAAACCTCTCTGATGATTTTAAAAATTTATAGTTGTATAAATTGTTTATTTTATAGCAATAAAAAAAGCCCACTTGAATGAAGTGGGCTTTTAGAATTTGGCTCTCCAACCTGGGCTCGAACCAGGGACCTGCGGATTAACAGTCCGTCGCTCTACCGACTGAGCTATTGGAGAATCTGCATGCGATTATAAGGATATATCACGAGTGGTCAAGCCTTTGATGTCATCTTTTCTTCATTTTTGACTTGTATGCTTTTTATTTAAACAAAAAAGATCAAAATTAAAAAAATGGATTTGAGTGGTTGCAAAGCGAGAGCTGACTTGTTAGATTAAAAACATAAAGAGCGTTTAAGTTTGACTTAAACCGTGTGGATTTAACCAACTTGCCAGCACTAAAATGGCTAAATAGGAGACAGCGCAATGACGACGCTAACTATTTCTCAAATTTTTCAAAAATTTTGTTTTTATCAAGAAAAGTACCTTTCTATCCTGCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGCATAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTACCGCATAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //