Array 1 62970-64342 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTYH01000004.1 Pseudomonas aeruginosa strain AZPAE14442 AZPAE14442_contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 62970 29 100.0 32 ............................. GCCTGGGTGGCATGGGCTGCGGCCATCAGCTG 63031 29 100.0 32 ............................. GCACCGCATCGCAGAACGGGATCTACGTGGCC 63092 29 100.0 32 ............................. GCATCCCCGATAGTCGAGACTCCGAATGTGCC 63153 29 100.0 33 ............................. TTGCTCACCTGGGAGAAGGCGCGGATCAGGCCA 63215 29 100.0 32 ............................. GTTTGCCGCACCGGGATGGAAACTTCCTGCTG 63276 29 100.0 32 ............................. GCCGCAGCCTTGTTGCATACATCGACCCAGTT 63337 29 100.0 32 ............................. CCAGTTGTCCAGTGCAGCATCCCGGAGCCGCC 63398 29 100.0 32 ............................. TGGTTCGAGTGCGATTTGCGTACGGAAGAGGG 63459 29 100.0 32 ............................. CGTGCAGTCGGTAAGAATCATCGCGCTGCCGC 63520 29 100.0 33 ............................. CTTCTATCCGAAACCCAGGTCACGCCAGACAAC 63582 29 100.0 32 ............................. GCCCCAAAAAGCGTTGGCGTCATCGGCTGGCT 63643 29 100.0 32 ............................. TCGTAGCCCTCCGGGAGGGATTCGAACTTGTA 63704 29 100.0 32 ............................. CCTCCGACGTGGAGGTTGAGGCGGATGGCTAC 63765 29 100.0 32 ............................. TGGAACTTCAGGTCCTTGTTGGTCAGGCGCTT 63826 29 100.0 32 ............................. CTCCCGTGAGCACTCAGGGCATCCAGTCGGCT 63887 29 100.0 32 ............................. AAAGCCATCGGGGCACGCATCGTTGCGCCAGC 63948 29 100.0 32 ............................. GCGATCTGAGCACCTGCGGATGCGTAGATGTA 64009 29 100.0 32 ............................. TAGGTGTGCTGGGCGTAGTCGGTGGAGTTCTG 64070 29 100.0 32 ............................. GCCGTGTCGTTCGATGGTGATGTCGTGCTGCT 64131 29 100.0 32 ............................. AGGTATTCCTTGCCCTTGGCCAGGAGCACGCC 64192 29 100.0 32 ............................. TCATCGATCGTGGCGGCTGCACTGGCTGCCTG 64253 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 64314 28 79.3 0 A..........A..C..-.....A....T | C [64318] ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.7 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTTGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGCCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTCGTATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGAATGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : TGTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCATGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGGAGCAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 73515-76046 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTYH01000004.1 Pseudomonas aeruginosa strain AZPAE14442 AZPAE14442_contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 73515 29 100.0 32 ............................. ATCAGGCTGTCGGTGTCATTGCTCGAGGACTT 73576 29 100.0 32 ............................. GCCACCACGAACAGGCCGGGCGGCAGCGGGAT 73637 29 100.0 32 ............................. TAGTCCCGAACGATCGGGTCTTTCTCCGCGCC 73698 29 100.0 32 ............................. TCCTTGAGGGCGATCTGAAGGCCGGCGACTTC 73759 29 100.0 32 ............................. GAGGCGAAACCTGCATGACGCTAGCCGAATAC 73820 29 100.0 32 ............................. TTGCCGGACGGCTCGACCGAGCTGCGCGGCAT 73881 29 100.0 32 ............................. ACGTTTGACGAGAAACAGGATAGCGAGACCTA 73942 29 100.0 32 ............................. GCGCATATGGATTCAAGAGGGCAGGGCGATGA 74003 29 100.0 32 ............................. CCATGGAGGCGGGCGAGTATGTCACCCTGATC 74064 29 100.0 32 ............................. TTTCGTCGTGCGACTCATACACTGGCGCCTCC 74125 29 100.0 33 ............................. GTAGGTGGTCAGCGCCTGCGTGGTCGTCTGGTT 74187 29 100.0 32 ............................. ACTTGCCTTGATGACCTCGCGCTTTTCCTGCT 74248 29 100.0 32 ............................. TCGTAGTCTACGATGAAGCGCGGGTCGGTTTC 74309 29 100.0 32 ............................. TTGAACAGCAAGGACGCTGTACTCAAGCCCGC 74370 29 100.0 32 ............................. TTGATGGTGCGGTAGGCTGCTTTGCCCTCCTC 74431 29 100.0 32 ............................. CACGTTTCGGTCGGCTATCGCGTCCTGCGCGC 74492 29 100.0 32 ............................. TGTTGGAACCCGCTAGCGCGGGCGAGCAGGCG 74553 29 100.0 32 ............................. TCTATGGGAGGTGGGGAGTGAACGAGACCGTA 74614 29 100.0 32 ............................. GCGTTTCCACGCAGGCAGATGCTCGCCACCAC 74675 29 100.0 32 ............................. TAACGGCCCGCCCCTTCACGCGACCTCCCGCG 74736 29 100.0 32 ............................. CCAAGAAAGAACGCCGAAAGGCCGTTAGGAAA 74797 29 100.0 32 ............................. ACGTTGAGTACGTCGGCGCCGTACTTTTCGTC 74858 29 100.0 32 ............................. CGGGCCTTGGCAGCGAGCAGGGCCTTCATGCC 74919 29 96.6 32 .................T........... CGCACTGATGCCAGAGCCGGAGTCGCGACCGG 74980 29 100.0 32 ............................. GCGCTTCACGGAGACGGCCTGCTGTTCCCTGC 75041 29 100.0 32 ............................. TTCAGCAGGGCGTCAGGGATGGCATCGTGTCC 75102 29 100.0 32 ............................. GCTACTGTCGAAGCCGGCACCACTCTGGACGC 75163 29 100.0 32 ............................. GCCGGATTCCGCTGCCGGGCTACATCATCCCG 75224 29 100.0 33 ............................. CGGGGCATGACTTCAACCCACCCCCAGCCCTCC 75286 29 100.0 32 ............................. TCGCACTTCCAGCCATGGCTGGACAAAGCGGC 75347 29 100.0 32 ............................. GCAGTCAAGGCTGCCGGCGGCCAGTCCGCCCT 75408 29 100.0 32 ............................. GTGTAGCGGAACCGGGCGGCGCCGCCGGCGAG 75469 29 100.0 32 ............................. GCCAGCAGGGATGCCAGCACGCAGCCAGTCGC 75530 29 100.0 32 ............................. CAGTGACGGCAGCAGACGCGGCGATGCTGGAT 75591 29 100.0 32 ............................. TCGGTAGACGCACAGATGGTCGAGCAACTTCG 75652 29 100.0 32 ............................. GCGCAGGGCAAAGCCAAGGTCACCGCCGGCAC 75713 29 96.6 32 ...........A................. TTCGAGGTCAGCGGCTTCGGCCCCGGCGAGCA 75774 29 96.6 32 ...........A................. CCGGGAATGAACGTTCCCATGTCGGCTACGCC 75835 29 96.6 32 ...........A................. GTCGCCAGGCCCACGTCGGCGGATCACCAACA 75896 29 96.6 32 ...........A................. ATGTAGCTGTTACGCGGTCCCGCGGTGCTGAG 75957 29 96.6 32 ...........A................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 76018 29 93.1 0 ........T..A................. | ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.3 32 GTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : GTGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //