Array 1 107755-106278 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQPR01000055.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 1657 NODE_10_length_170420_cov_35.6513_ID_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107754 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107693 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107631 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107570 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107509 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107448 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107387 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107326 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107265 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107204 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 107143 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 107082 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 107021 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106959 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106856 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106795 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106734 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106673 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106612 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106551 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106490 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106429 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106368 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106307 29 96.6 0 A............................ | A [106280] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125441-123887 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQPR01000055.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 1657 NODE_10_length_170420_cov_35.6513_ID_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125440 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 125379 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 125318 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 125257 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125196 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 125135 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 125074 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 125013 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 124952 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 124891 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124830 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124769 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124708 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 124647 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 124586 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124525 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 124464 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124402 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124341 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 124280 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 124219 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 124158 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124097 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124036 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 123975 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 123914 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //