Array 1 16086-15854 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPRL01000006.1 Staphylococcus ureilyticus strain DSM 6718 cbf8068a-d397-401c-8aca-f805f66121a9_c6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================== ================== 16085 35 100.0 31 ................................... AAAAAGTTTACTTTCTCTCTGCTGTTCGAAA 16019 35 100.0 31 ................................... AAAAAGTTTACTTTCTCTCTACCGTTCGAAA 15953 35 100.0 30 ................................... GGAATAAGGATTACCTGAGCTTTAGCTCAT 15888 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =============================== ================== 4 35 100.0 31 GCATAAGAACCACTAACCCAACAAGTTGGGAAGTG # Left flank : TCGCATTTAAGCCATAATTTACCACTTTGCTCAAGGTGCTCAGAGTCAACTAATGCTTGTTGCATAAAAGGGATTGCTTTTAGTGGGGATTCAATCAGACCATGGTCTTTTTCAGTTTTAGGAAAAACATTACGTATATAACTGCTAAAACGTTCTAACCTTGCTGCAGCATCTTCTATATCATCTAATGAAAAAGGGAATGTTTCATCATTACGAAAATGTGGATTTTTCCAAAATATCGGTTTATATTGTTGCATGTCATTGACTAAAGGAAAGTTACTTTTTAATTTTTCAACATTTATCATAAGTGACCACCTCATAAAGTTAATAGTATTTAGTGTTTATTATAGCAAAATTAGATACATAAGATGTTATATAACTGATATTTCAAAATGCTATAAGTTTAGAATGAGATGAATTTTTTATTATTTAATAAGAGGATATCATACGAAACCGATAAAGATGATTTCGCAATAAGGATTACCTGAGCTTTAGCTCAT # Right flank : GTTCTTTATCATCGTTTAAACGTATCTTTTAGTTTAGAAAACCATCGATTTTTATGTTGTATAGGAACTTCTTGTGGCAGGGTAGAAGCTTCTTTTAATTTTTGGCCAAATGTCATCGCTTCTTTCATTAAATAAGCCTGTGAATTTAATGGTGATAAATTATTATGAATATAATGATAATAACCTTGTTCGTCTTGATATCGACCTTTTTGATTATCTGACAATTGTAAATTCATATAATCTAATAAGCGTTTAGCAATGTTTTTATCTTCGACAGGGAACAATATTTCTACACGCTTAATCATATTACGTGTCATTGCATCCGCTGAAGAGAGGTAAATTTTTTCATCACCGTTATTATGGAAATAATAGATACGAGAGTGTTCAAGGAAACGACCAACGATACTTACTACTTCAATATTATCGCTGACATCTGGGATGCCTGGTTTTAAACAACAAATACCGCGAATAATTAATTTAACTTTGACACCAGCACGAGA # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCATAAGAACCACTAACCCAACAAGTTGGGAAGTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 13274-13496 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPRL01000088.1 Staphylococcus ureilyticus strain DSM 6718 cbf8068a-d397-401c-8aca-f805f66121a9_c88, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 13274 29 100.0 37 ............................. TTTCGAGCAGCAGAGAGAAAGTAAACTTATACACTTC 13340 29 100.0 35 ............................. ATGAGCAGAAGCTCAGGTAATCCAAAATATACTTC 13404 29 100.0 35 ............................. ATGAGCAGAAGCTCAGGTAATCCAAAATCCACTTC 13468 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 4 29 100.0 36 CCAACTTGTTGGGTTAGTGGTTCTTATGC # Left flank : ATGTCTACAACTAAAGCAGTGATTCCAGGAAGTTTTGATCCAATTACATATGGTCATATTGACATCATTGATAGGAGTGCCGATCGCTTTGATGAATTGCACATTTGTGTTTTGAAAAATAACAACAAGTCGGGCACTTTTTCAGTCGATGAGCGCATTGAGTTAATAGAAGCATCTGTAAAACACCTTGATAATGTTACAGTACATCATTTTAATGGATTACTTGTAGATTTTTGTGATGAAATTGGTGCGCAAACAATTATTAGAGGTTTGAGAGCTGTAAGCGATTTTGAATATGAATTGAGATTGACTTCAATGAACAAAAAGTTAAATAGTAATGTAGAAACGATGTACATGATGACAAGTACAAATTATTCCTTTATTAGTTCCAGTGTAGTGAAAGAAGTGGCTGCATATAAGGCTAATGTATCCGATTTTGTACCAGAACATGTTGAAAAAGCATTGAATGAAAAGTTTAAGAAATGATAAAGAACCACTTC # Right flank : CTTTCGAGCAGCAGAGAGCAAGTAAACGATGTACACCTGTGATGAAAAATTTCTATCAAAAGGATGATAACCATTAATAATAATTCGAACTCACTATTTAATAAATTAAAAGAAACGAAATTAGCTTTTTCGTTTGAAGCCTTAAATATTGAAAACTGGAATCAAGCATATGAAGCTATCAATTTTATGTTTAATCATGTCACTTTTAAAAGTAGATTAGCTAGAAAAACACCAAAGAAACGCGGCTATTTTGTTGCGATATGGCGTAAAAATGATCAAGGAAACAACGTACCTTTTAATTATGATGAGATGGAAGATAAATTAGTTATTAATATATTAGATGGAGTGAAAAAAGGACAATTCATTTTTCAAAAAGAAATTCTTATGCGCAAAAATATTTTAAGTTCTGAAAAGCAAAAAGGAAAGATGGCTTTTCGTGTTTATCCAAGTTGGGAAAAAGACTTAAACAAAACTGCAAAACTTACTCAAAAGTGGCAGCT # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAACTTGTTGGGTTAGTGGTTCTTATGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //