Array 1 648428-646273 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034544.1 Mycoplasmopsis synoviae strain HN01 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 648427 36 100.0 36 .................................... TAAAACTATTGATGTTTTATATTATTTGGTAGAAAC 648355 36 100.0 30 .................................... TTTTGAAGTCATTATAAACACTGCTAGCTA 648289 36 100.0 30 .................................... TTTTGCAGGTCAATGTTTTTTATACCAGGC 648223 36 100.0 30 .................................... GGAGTTAAACGGTATATACTTATTATACTC 648157 36 100.0 30 .................................... TTAAGGATAATATGACAACAAACCAACCAA 648091 36 100.0 30 .................................... CTTGAATACATTTTTTTAAGAAAGCTTTAA 648025 36 100.0 30 .................................... CAAAAATTAGACAATCTGGTGTATATTCAT 647959 36 100.0 30 .................................... TATTGATGTTTTATATTATTTAATAGAAAC 647893 36 100.0 30 .................................... CCCCGTTAGGTACGTCATAATACTGAATGC 647827 36 100.0 30 .................................... TAAAGTTCTGAAACTAAATCATAGAAATCG 647761 36 100.0 30 .................................... AAAAGCGCTAGTTATTCCAAATTTATCAAT 647695 36 100.0 30 .................................... GAGTTTCAAAATGTTGGGGCTGTTGTTATC 647629 36 100.0 30 .................................... AAATATTCTTCGAAAATCTAAAATACTGCT 647563 36 100.0 30 .................................... TAACTTTTTTAGAAAATAAAAAATGTGGAA 647497 36 100.0 30 .................................... AAATTAAAAACAAAACAAGAGCTAATATCT 647431 36 100.0 30 .................................... TTGATTATGAAAGTAAGTTTGGTGTCCCCT 647365 36 100.0 30 .................................... TAACTTTTTTAGAAAATAAAAACTGCACAA 647299 36 100.0 30 .................................... TTAAATAAACACCGTAAGTTTTTGCAAAAT 647233 36 100.0 30 .................................... ATTTCACCCCGAATTATTTTAACCTCCCTA 647167 36 91.7 30 .......AA.C......................... TCGAAGAATATTTTGACCGAATTTCCCATA 647101 36 100.0 30 .................................... TTAATTTTTTAGCAGCAAAATGTGGTGTTG 647035 36 100.0 30 .................................... TTTTGTTTGTTTCATGGCAAAATTATCAAA 646969 36 100.0 30 .................................... GGAATTAATGACTTTTAATACTTTTAGGCT 646903 36 100.0 30 .................................... TTAAAATTAAAATATGGTGTTGTTGATGTT 646837 36 100.0 30 .................................... ATTAACGCGTCGCTAAATTTATAATTATTT 646771 36 100.0 30 .................................... GCTAACAACACCATATTTTAATGTCTTAAC 646705 36 100.0 31 .................................... TTTCTTTCAGTTCCAAACACTTGGATTGATG 646638 36 100.0 30 .................................... TCGAAGAATATTTTGACCGAATTTCCCATA 646572 36 100.0 30 .................................... ATTTATTAAACAACTGTATATCATTAATTA 646506 36 100.0 30 .................................... CATCATTAACGTTAAAGACGTTACTTCTTC 646440 36 100.0 30 .................................... CAATTAGCAATTTAGAAGAAGATTCGGATT 646374 36 100.0 30 .................................... ATTCATGTAGATTTACCAAATAGAGATATA 646308 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================== ================== 33 36 99.7 30 GTTTTGGGGTTGTACAATTATTTTGTTAAGTAAAAC # Left flank : ATGAAAAATTAGTTTTAGAAATTAAAAATTTATTAAACAATAAAATAGGTTTTGAATTTGTATCTATTGAAGAAAATAATTCTAAATATTTAAAATATTTATTTAATTTAGAAAACGATAAATTTATTGATAATAAATCTTTAATAAAATGAATGGAAAATCAAAAATATAATAATCAAAAAATAAATTTAATTATTAAAAATTTTGATTTTGTTTTAATAAATGAATTAATTAAGTTTTCAAATAATTTTAATATTATTGTTTTAACTAATGATTTCTTTAAACATATAAATAATTTTGATTATATAGAAAGTGTTGCTCTTACAAATGAAGATCTAAATAGAATTGTTTCAATTGAAGAAAAAGATTCATTTGAATATTTTTTAGAAGAAATTTTTCAAGATTCTATAAGAAATATTGAAAAATTTGATTTTTTTTCACAAAACAATAAAGATTTAATAAAAAAATCATTAAAAATTAATTTTTTTTAATTAAATGCG # Right flank : ATTAGCCCCACAATTATTTTAATCTCCCTCATATTAGCACACTAATATCTTCATCTTTAAAAGCGGAAATAAAATGAATTAACAAAAAAATGGATAAAAGAAAAGCTGTTTCAATGAAAAAATAACAAATCCTGATGAGTATAAAATTATTGAACATGTAAATCCATTAGGGATCAATTTAAACTGAACTAAAAAATTAGAAAATAATAATTAAATTTATTTTTTTGTTGTATAATGTTATCGTATATATTACTTACTTAACAAAATAATTGTACGATTCCAAAATAAGGCGCTTATGTAAGATGCAATAATGCACTTATATAAGCTGCCGTAAACGCCGAGGTAACTCGGTTTTTTTTATACAAAAGTTATGGCAAAAAAAGTTGTTGAAATAAAAGAAACAGAATACTTATTTTTTCATTTAAATTCTTTAATTGTAAAAAAAGAAAACAACAAAATTGTTTTACCGTTGTCAGATATAGATACTATTTTAATTTCCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGGGGTTGTACAATTATTTTGTTAAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [70.0-88.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //