Array 1 51856-52423 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSDB01000002.1 [Clostridium] symbiosum strain OF01-1AC OF01-1AC.Scaf2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 51856 33 100.0 35 ................................. TGACGCCCATGTCATTAGCCGTCCATTCTCCGCAA 51924 33 100.0 33 ................................. TTCTTGAAGTAGTGCAAAAAGTTAGAGTAAGAC 51990 33 100.0 33 ................................. AACGCTATGACATCATCATCAAAGTTTTACCAA 52056 33 100.0 34 ................................. ATCCTCAAGCGGGTTGTCCGCCGTGGGGTATTTT 52123 33 100.0 33 ................................. CGATCCCCCCGGTCCATTTGTAAAGCCGTCCTG 52189 33 100.0 34 ................................. CCGTATTTCATTGGGACTATACTTTGTTCTTTTT 52256 33 100.0 35 ................................. TCGTTAATCAATATATACCCGATAATATAATCATT 52324 33 97.0 34 ............................A.... GTTCCAATATTCGGATATGATTTTCCGGCAACTG 52391 33 97.0 0 .................T............... | ========== ====== ====== ====== ================================= =================================== ================== 9 33 99.3 34 GTCGAGGCTCGTGAGAGCCTTGTGGATTGAAAT # Left flank : ACAAGAAACTTGAGGCTTATTTTAAAAGTAAAATGAAAGCGTAATAAGAGAAGCTGATATTTGGAGATTGGATTTTATCTTAAGCGGCTTTAAATTAGTGTGAAGCGCGGAATTATAATCTGTTATATACTTTGTTCATATAAAAAATATAAACATTTATGTAAATACATTTGAATTCTTCGAGCGTGACAAAACATAATAAACTGCTGGGTACACTGTTAACTGCGACCGCCATTTTAAATGATTGTTTAGGATTGTACGGGAAAATTTAGCACATATTGATAATGGAGGTAATTTAAAAGAGGGTTGATTTTTAGTAAGGAAACTCTGGTGCGAATAATAGTTGCACATAAAATTCCAGGGGGATTCGCACTGCAAACGGCCGGAAAATAGGATTAAAATACGAGAAAATTTTTTGACTTGCTGGATGATTTGTTGAAGGTGTATAATTAAGATATATAAATTTGGCATGGATGCAAGGATAATTGTGTATTTTTGCT # Right flank : TTCAACGACTGGAAGTTGGAAGCACTTATGTCGACTATACATCTTTACTACTCACCTCGAAATACTCTATAATTCCCAGTGTTACAAAGAAAATATATTTAAAAGGGAAGGGGAAAGCTTCTATGGCAAAAGATATTAATATTCAGGATTTAATAAACAAGATAAATAAATTTAGAGAGGAAAGAGACTGGAGAAAGTTTCACAATCCTAAGGATTTATCAATCTCCATTTCACTTGAAGCATCAGAATTGCTGGAATTGTTCCAATGGAAATCAAGTGAGGAAGCGGTAGTAAATAATCTGGATAGAATGAAGGATGAAATTGCTGATATCTTTATATATCTGCTTATGCTTTCGGATGATTTGGGGTTAGATCTTTTCAGTGCGGTTACTGAAAAAATGAATAAAAACAACGGAAAATATCCAAAAGAGTTATGCAAGGGGAAGCGTGATAAGTATACAGCCTATTTAGAGTGAAAATTAAACATAATATTTCATTAT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTCGTGAGAGCCTTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGAGGCTCGTGAGAGCCTTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 53171-54207 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSDB01000002.1 [Clostridium] symbiosum strain OF01-1AC OF01-1AC.Scaf2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 53171 33 100.0 36 ................................. CACTCCTCCGATGACTGCCCGGGCCACAGCAGCACA 53240 33 100.0 34 ................................. CGTAAAGGCTATTCCTACACCTTGTACGGAAAGA 53307 33 100.0 33 ................................. ACCCATCATGGCAACATTCGTATTTGATTTACT 53373 33 100.0 34 ................................. GGCCGTATTGAAGAACAGGATTGATTTCTGCGGC 53440 33 100.0 34 ................................. AATGTTTGTCGTGTACCCACAACCTGCATTACAC 53507 33 100.0 33 ................................. ATTATCATTTTCGCTTTCATCATATTCCATCCG 53573 33 100.0 35 ................................. GCCAGAGGTTCCAATTAGCTTTGTTCCGTTTCGAT 53641 33 100.0 34 ................................. TGATATTCCCATTTGTAAAGTTATTGACGTACAA 53708 33 100.0 34 ................................. TCCTTGTTCTGATACCACAAATACAATCGGAGAT 53775 33 100.0 33 ................................. AGTTGGAGAAACCGTTAGAGACGGCCGATGATA 53841 33 100.0 33 ................................. ATTTTCAAGTTCAAGCCTGATTAAGCAATTAGA 53907 33 100.0 34 ................................. CGTTTAGTCAAACGGTCAATGTGGCGGGAGCTAC 53974 33 100.0 34 ................................. ATTTTCCGCTTTAAGCAGACATCGGTAATGATTC 54041 33 100.0 34 ................................. TTTCGCCCCATTCTCGTGATAAAAATCTGACCAT 54108 33 97.0 34 ...........T..................... TATAAATTCATCTGGTACGTCGATCCGCAAATCT 54175 33 90.9 0 ........A............A......T.... | ========== ====== ====== ====== ================================= ==================================== ================== 16 33 99.2 34 GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT # Left flank : TTGCTGGAATTGTTCCAATGGAAATCAAGTGAGGAAGCGGTAGTAAATAATCTGGATAGAATGAAGGATGAAATTGCTGATATCTTTATATATCTGCTTATGCTTTCGGATGATTTGGGGTTAGATCTTTTCAGTGCGGTTACTGAAAAAATGAATAAAAACAACGGAAAATATCCAAAAGAGTTATGCAAGGGGAAGCGTGATAAGTATACAGCCTATTTAGAGTGAAAATTAAACATAATATTTCATTATTACATTGCTTGTTTGAAAACTGTAGGGTTGACTATGGGTTGATTTGATGGGTATTGATCTTTAGTAAGAAGAACCAAGTGCGAATAGTAGTTGTACATAAAATCCCAGGGAGATTCGCACTACAATTGGCCGGAAAATACTATTAAATTACGCGAGGAAATTTCAACTTGATAAACGATTTGTAGAAGATGTATAATATGAAGCATGTAAATGTGGCATAGATGCAAGAATAATTGTGCATTTTTGCC # Right flank : TTTTACAGGTGGAATATACTTTTTTATAGACCTTGTAAATAAAATCGCTTAATTTAGATTTGCTTCACTTAGTCTGTTCGATGACGCTATCAAAGCCATATCAATTCCCCCACCAAAACTAATTCAAAATAATGATTGACTTTTTAAACTGTAACAATTATACTTACAGTAAAGAAGGCAGAACATATATTTCCTAATAATAATATAACTAACACACAAAGAAGTATCAGAACCCACTTATCCATCAATAATATATACATTATTTAAAGGGAAATCCCATCTAATAATTGCAATACCACATTATTTATGAAGATAAATAGTCGAAGGCCATAATAAAGATATGCTCAGGAAAGAAGGTATATAAAAATGGTAGTAAACTTAAAATCCAACACAGAACCTAATCCGAAACCAGACGATAGCCAAAACCCGGAGATAAGCAAAAATACGAATAATGATATCATACCCACTCAAAAAACTAACATAGAAAACACGACAAAACT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 24800-19959 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSDB01000016.1 [Clostridium] symbiosum strain OF01-1AC OF01-1AC.Scaf16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 24799 32 100.0 33 ................................ CCACATCTGCTGATGAATCCGATGATTTTGAAT 24734 32 100.0 34 ................................ CTTTTTGAATTTGACGGTGACGAGAAGTCCATCC 24668 32 100.0 33 ................................ ATTAAATTACAGCCTGACTATGGCGGAATTATG 24603 32 100.0 34 ................................ ACTATATAAGCCACACCTAAGTTAGTAGAAAGAC 24537 32 100.0 34 ................................ GGTTTTTAGGTAATCTGCTTTGATTAACACACTT 24471 32 100.0 33 ................................ CGTCGTTACGTTTGATGATCTATATGAGATTTT 24406 32 100.0 33 ................................ CTCCTATAGAAGAAGCATAATCAATACAGCCTT 24341 32 100.0 33 ................................ AATATTGCGCCACAGTTTCCAGATGGGAATAGT 24276 32 100.0 34 ................................ CAACGGATAATCTTCCACCAGTTACATAAATATT 24210 32 100.0 35 ................................ CTTTATGTGTAAATCATTAAGCAGAATCGTTCAAT 24143 32 100.0 34 ................................ CTGGAACTGTGGCATCTGAATGTCCAGACCGAAG 24077 32 100.0 34 ................................ CCAATCATCAACCCAAAATTATCAGAAGACAATG 24011 32 100.0 34 ................................ CGTCCAGTTCGGCGGTGCATCCCGGGCCGAAGTG 23945 32 100.0 34 ................................ CGATACGGCCGCGATTGGCTATCAGACAACTATC 23879 32 100.0 34 ................................ GTGACATCCGTACTTGCAATCTCCTGTGGATAGT 23813 32 100.0 34 ................................ ATAGGCACATTAAAAAAAGCGTTGGTTGTAGCCG 23747 32 100.0 34 ................................ CCTCCAATTCTTTCATCCTACCACAAATTCCAGT 23681 32 100.0 34 ................................ ATGCATGGAGCCTTTGACGGAATCCTGAAGAATC 23615 32 100.0 34 ................................ TGAAAAAGTGTCTCTAATTCGGCCAGCAAATACG 23549 32 100.0 33 ................................ GAATGTGTTTGTTTCGTCAAATTCTCCGGTTAC 23484 32 100.0 34 ................................ AGTTGCATCCGCCACCAAGACAACGCCATCATAA 23418 32 100.0 35 ................................ CCATGGAAACACGATCCGAAACGCCGACCAATGGA 23351 32 100.0 33 ................................ CGTACAAAGTAAGTAAGGCAACCGGTGTTTCTC 23286 32 100.0 34 ................................ TCCAAATCTTTCTACCATTTCCTTTACTTTTAAT 23220 32 100.0 33 ................................ AGTTAAATGGCGAGATGAAACAGAATTCTTTCG 23155 32 100.0 35 ................................ GCCGACAACGGAGAATGTAAAAGCTTGGGGAGGCG 23088 32 100.0 34 ................................ CTTTGAGCGATTTAAAGAGTGGTTTCTCCGGTTC 23022 32 100.0 37 ................................ AAAATTCAGCAGGCCTGTTCGTTGAGTCCAGTTATGT 22953 32 100.0 33 ................................ TTCCGCCACTTCCGCCCATGTAACGAAAATACT 22888 32 100.0 33 ................................ GTCATTATTAGCGTGACCAAATCCCATGCACTT 22823 32 100.0 36 ................................ ACATTTAATTCCTCTTGCCATCTGAATGCAACCCGC 22755 32 100.0 34 ................................ CATTTCTGACTTTGTTCCACCGTATCCCAGTTTC 22689 32 100.0 33 ................................ TCTTCAAATAAATTGAGCTGTTACTCGGTACAC 22624 32 100.0 34 ................................ AATAACAAACTTGAATTTACGCAGAAAGAAATTG 22558 32 100.0 35 ................................ AACTGAGATCGTACTGTCAGCCGTATCAGTAGCAT 22491 32 100.0 34 ................................ TGGATATTAAAATCGATATCGTCGGTTGTAATCT 22425 32 100.0 35 ................................ TGTTGCAAAGTATAGTAAGTGCAAGAGAGGTGTAA 22358 32 100.0 34 ................................ GACGGCCGTAAGTATCTACTTTGCCCAGATAAAG 22292 32 100.0 34 ................................ CATAGCGGCGTTCCGCGTCTCTGGCCGCTTCCTG 22226 32 100.0 34 ................................ TTTTAACCGGCATTCTGAAATTAACTGAATTGCT 22160 32 100.0 36 ................................ TTCTTTGTATGCACATCCGGACAATCTGGGCAAATG 22092 32 100.0 32 ................................ TGACCACAGGAACCTTCTGGCGAAGGGGAGCG 22028 32 100.0 33 ................................ CCCATCCGAACTGCAACTTGTGCCCAAGTCAAT 21963 32 100.0 33 ................................ AAACGAATGGGGGCTTATTGCGTCAGTTTTGAA 21898 32 100.0 34 ................................ AATCACGCGGTTCTTACTGCCTCCGCCAGAGTTG 21832 32 100.0 34 ................................ GATTAATCATATCCGTACCACATGTTCGTCTAAA 21766 32 100.0 35 ................................ TTGTAGCCTGTATAAAAGTACCTTTAACCATAGGC 21699 32 100.0 34 ................................ TATGTACCCGGCTGAGATAAGATCGTCCAGAATA 21633 32 100.0 32 ................................ TACCCGTAGCGTCATATTCATAGACGTTTGAA 21569 32 100.0 33 ................................ CGATAAAGGCTGGAATATTGGATGCGCAAAGAT 21504 32 100.0 34 ................................ GAACTAATATCTCCACTACTATTATCATTTGATG 21438 32 100.0 33 ................................ TGCCATCTCCACGGATTATATCCGCTCTCCGCT 21373 32 100.0 36 ................................ GAACGTTGTGCTGAAAGATTCCACCTACACGCTGGG 21305 32 100.0 35 ................................ TTTGTTTTACGTGACAGCGGTATCTCGGAGAAGAA 21238 32 100.0 34 ................................ TAAACAGCGGATTAGTAATTATGCAATGTGTCGG 21172 32 100.0 35 ................................ CGTCAGTTGCAAGTATTAACTTCGGTTGGTGGAGT 21105 32 100.0 33 ................................ GAACGTTGTGCTGAAAGATTCCACCTACACGCT 21040 32 100.0 37 ................................ TTAAGCTTGATATGTCCTTTAATGTCTCCGCTTACAA 20971 32 100.0 34 ................................ ATGAGAACCTTGCAAGAGCTACAGTGGCTAACTA 20905 32 100.0 33 ................................ AGGTGTTATCCAGAACCATTTTTTCTACCAGAC 20840 32 100.0 33 ................................ TTGCTTCGAACGGCAAAATATTCGATACTATTT 20775 32 100.0 34 ................................ GATACAACGAAGCTTTCAGGGACAAGCATATTGA 20709 32 100.0 33 ................................ TGGAAAGCCTGTCTGAGCCGGTTAATTTCACGA 20644 32 100.0 34 ................................ CCGATCACTAATTGAGTAGTTGAACCCTGGAAAC 20578 32 100.0 32 ................................ TTTTCAATATTAATAGATGTATAGCAATCTTT 20514 32 100.0 34 ................................ TGCGGTTACAGCGGCAGTTGGACAGTCGGTGCAG 20448 32 100.0 33 ................................ TATAAAGGAAATGAAATGCTTGAGACATCCGAT 20383 32 100.0 33 ................................ CGATTGCAAGGTATTTATTCCCACTTATCCAGT 20318 32 100.0 33 ................................ ACCACAACATTTACAATCGTTCCGCCAATTTTC 20253 32 100.0 33 ................................ TGTCAAATCCTCAAATTACTGAATAAATCCATC 20188 32 100.0 34 ................................ GTCAATCAATTCCCCATCCAGTGAAGCATGCATC 20122 32 100.0 34 ................................ CATCAGGTTCTTCGGCTTCTCCCTGATGGCGTAG 20056 32 100.0 34 ................................ ACGTACAAGGGGCCGTTGACAAGTTTAATCAGAT 19990 32 87.5 0 ..........................T..GGT | ========== ====== ====== ====== ================================ ===================================== ================== 74 32 99.8 34 GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Left flank : GAAATGAGGTGATGGATTTGCTCGTTCTTATAACCTATGATATTAACATTACAGAAGCCGCAGGGGCCCGCCGTTTAAGGCGCGTAGCCAAGCAATGCGTAAATTATGGCACACGGGTACAGAACTCTGTTTTTGAATGTCAGGTGGATGCAACGCAATATGTGAAGCTAAAACATCTTCTGATGAAAGAAATTGACGAAGAAAAAGACAGTCTGCGTTTTTACTCTCTAGGTAATCATTATAGCGGTAAGGTTGAGCATTTTGGCGTGCGGCGCGGGATACAGGTGGATGAACCTTTAATTTTATAAAAGAACCGCAGGGAAGATGTCTTGCCTTATCAGTGCGAACCCGAAGTGAACATGAATTCTGTGGGAGGTTCGCACCTGGATTTTGGTGTAAATTGGCGGGGATTCTGGTTTAGAGATAAAATTAAATATCATATTTGGATGATTTGAATAAAAAGTAATGTAAAAAATACTCTAAAACCATGAATTTTTGCT # Right flank : TTTATTGGCGCAAAGAGGTGTGGATTCCGGGGATAAGAGATCGGCAGATGAAATCTGTCAGCAGGAACTGAAGAATGCTGTCTGCATCACACTTAAGGAAAAGGGGGCTCAGGAAAAGGGGAGTCTTATGAAAAATGTGATCCGGACGATGGGGGATGTCCGAAGCAGTACTTCCTTAGTGGAGGCTGCTGAAAAGGGGATGAAGTATGGAAGGAAGACAGGGGAGATTGTGCAGGATGAAGAGAAGCAGTTTAGGCTGGGAAATTGACAATCTTGCTAAACTGAAAAGTGCAGTTCGCTAAGGAAGAATGATACCCGGTGTCAGAAAATAGTTTGGAGAAACTGAGTAACAACAGCAAAAACAATCATTCATAGCAATTAAATCACCAGAAGAATTTACCTGCACATTAGGAAATGATTAATAAATTCTTTAGCATTCAATAATACAATAATTCAAAAGATTTATTATAATGTTAGAGGAGATAAAAATCATGGAACGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.00,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //