Array 1 829830-830406 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGRC01000001.1 Caballeronia cordobensis strain LMG 27620 scaffold2.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 829830 28 100.0 33 ............................ CGCCTTCGTCATCAAAAGCGCCTACAGCGAAAT 829891 28 100.0 33 ............................ TTGCGCGAGCAACGCAAAGATTCTAAGTTGGTC 829952 28 100.0 33 ............................ CTTTCCGGAATGCGCGCTCGATTCCGCGAGCAC 830013 28 96.4 33 ...........A................ CAAGATTCCTCGCGGCGAGTTGCGGCCGCATCA 830074 28 100.0 33 ............................ CAACGTCGGTGACGCCCTGAGCGCTGTCGATAA 830135 28 85.7 33 C.........T..AC............. CGGCGTATCGGGCACGGTGCGGCCTTCTGCGGG 830196 28 100.0 33 ............................ GTATTCGAGCGTGCAATCCATGTGCACATCGCC 830257 28 96.4 33 .........................A.. TCCGCTTGCTGAAGGGAAGCCCATGATTCGCAC 830318 28 100.0 33 ............................ CACCCGATGTAACAGCTAAACGGGCTGTTACAG 830379 28 92.9 0 .............AC............. | ========== ====== ====== ====== ============================ ================================= ================== 10 28 97.1 33 GTTTCCTCCGCGTGGGCGGAGATAGGCC # Left flank : GCACGTGAGCCCGCAACAGATCGCGGATGTGATCGGCATTGCGCCTCGCTTGCCCGATGGTTCGGATGCGACTGCGCCGAGGGCGTCGGGGACGTTGAAGGCGCATTACGCGCCGAGGACGCCGCTCGTGCTGCTGCCGTTTTCGGCGATGGAACCGCTGCTTCGTCGTGATGGCGACAAGAAAATCGCACTGGTGGCGCGGGCGTCGAGCGCGGGGGAGTGGGCGCGCGCCTCGCATGTTCACTTCGTGGCGGCGCCGGAAGATCCGCAGTCTTATGCCCGGGATCTTTATGGTTTGCTGCGGGCGCTGGATCGGGCGAATGTGGAGCGGATTCTGATCGAGAAGCTGCCGGAGACGGTGGAGTGGATTGCGGTGAATGACAGGTTGGGACGGGCGGCGGCGGCGTTTGAGGCTGAGGAGTGATTCGCTGCGGGTTTTGGGTGAATGTGAAGATCGGTTGTCGGGATTCCGCTTTTGGATCAGTTGGTTATGATCTAGG # Right flank : CTCCCAAGGGAACCGCGAGCCAGCAGCACCTCGCCCTTCCTCCGCTCCTGCGGAGACAAAAAACAAAAACCGCCCGGACAATCCCTCATCCGGGCGGCTTCCCCATCTCAAAGAGAATCGCTTACTTCCCCAACCCCGACTTCGCCACCACCTGTTCCGCCGCTTGCGCGTACAACGCACCCAGATGCGTCGTCGGATGCACGGTATCGGCGTACATGTAGGTCTGATCCGCGCCTGCCACAGTCAAAGTCTCCGGCGAGCAAAACAGGGAAGTCGCGAAAGCAGCCGGGTTGGGTTCGCCGAACTTCTGCGCCGCCGCCGCCATCGCCTGCAGATTACAGGCCGTACCGGTATTCGACACCGTGAATCCGAACTGCCCAAAATTCGCCGTGACATTGGCAAGCACCGGCACGATGTCGAGATAGATCACCTTCGACATCAGCCCCGCTTGCGTCAGCGCCCCGGCAAGCGCCTGGTTGAATCCGAGCGATGCCTGCGTG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCTCCGCGTGGGCGGAGATAGGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.50,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 90716-89895 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGRC01000002.1 Caballeronia cordobensis strain LMG 27620 scaffold12.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 90715 28 100.0 33 ............................ TTAGAGCGACTGAAGTTAGTGATAGATTGATCG 90654 28 100.0 33 ............................ TTGCAGCGTGCAAAAGACGAAGAATCGCGCAGC 90593 28 100.0 33 ............................ GACGCGCGAAAGTTCAACGACGCGCGCTTGTTC 90532 28 100.0 33 ............................ TTGACGATGACCGTACCGCCCGGAATGTACTGA 90471 28 100.0 33 ............................ CGCCGACGATGTGTTAGTAAGCGCCGTCGTCAA 90410 28 100.0 33 ............................ CTCGTCTTTCCTGGCAGACGGTTCTGTGTTCTC 90349 28 100.0 33 ............................ CCGCTCATAGGTCGGACCCAACGGCATCGTCAG 90288 28 100.0 33 ............................ CGACATCAGCTCTGCCGTGCTGGCCTCGCTGGG 90227 28 100.0 33 ............................ CCCGCCGACTCGCGCGAAACGCCATTCGCAAAG 90166 28 100.0 33 ............................ GTGAAAAAACAACCTGTGGAGTTTGTTGCAACC 90105 28 96.4 33 .........................G.. CACGTGACTCTGGAAGGCGAACGCTGGGACAGC 90044 28 96.4 33 .........................G.. TCCATCGCTCGCGTATCACGATGCCATCGCGAT 89983 28 100.0 33 ............................ CGTGCTGCCGATCCTGCAGGACAAGAACAATCA 89922 28 92.9 0 .....................T...G.. | ========== ====== ====== ====== ============================ ================================= ================== 14 28 99.0 33 GTTTCCTCCGCGTGCGCGGAGATAGACC # Left flank : TTCGGGGTTGCCGCGCTCATCGCGCGCTCTTGTGGCGAGCGCGCGTTTGTGTTTTAGTGGCCCGTTTTCAGACTTGCCGGAGCGTTATGACCTTGCATCGATTTGCCTTCTTCTGCGCGGCGCTGTCGGGCGCGGCCGCCCTTGCAGCATGCAGTTCGACGAGCGAGCCGGAGCTGCGCGCTTCGAAGCCCGTGATTCACGTTTCGTCGGCGCGGGCGGCGTCGGATATATCGAGTTGTCTGCAGCGGATGATTCCATCGGCGCAAGCAAGACGCGATCAAGGCTCGACGGAGTTGATGGTCGGATCGAATGCATGGCTCGTGACGCTGACGCCTTCGGTATATGGATCGGTGGTGAAGGTGCAGCAGTCGTCGAGTGACGATGGTGGCGTGCCGGAGCCGGAGCTTCGGTTTGATATTGCGAGGTGTACGACTTGAGGGGCGTTTTCTAGGGGTGGGGTTGGTGATTTGGTGTTTTGGATCATGAGGTTATGATCTAGG # Right flank : TGTCGAGGCTCGATCTGCACGCCGCACAGCGTGTTTCCTCCGCCCCCAGCGGAGCCCCAAAACAAAAACCCCGCAAGCCTGACGACTTGCGGGGTTTTCAGATTTTGGCGGAGAGGGTGGGATTCGAACCCACGGTACGGGAAAACCGTACGCCTGATTTCGAGTCAGGTACATTCGACCACTCTGCCACCTCTCCGGCTACCAGTTCATTTGACAACTTACTGGCCTTCGTGAGCCGGTCGTTGCTCAACGAAGAACGAAAGTATATCGAACTCTTCCGACCTTTCCAAGCCCCTTTTTGCAAATAGGTGTCAAACGGAAGCTGCGACTTCGATCCGTTCCGCACCGCGCATGTACGGGCGCAACGCGGCGGGAATCGTCACCGAACCGTCCGCGTTCTGGAAGTTCTCCAGCACCGCGACGAGCGTGCGCCCGACCGCCAGCCCCGAGCCGTTCAGCGTATGCACGAACTCCGGCTTGCCCTGCGCGTTGCGAAAGCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCTCCGCGTGCGCGGAGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.00,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 462593-460796 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGRC01000025.1 Caballeronia cordobensis strain LMG 27620 scaffold7.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 462592 28 100.0 33 ............................ CTTTGCAGATCGTTCACGCGGCCCATTGCCGAC 462531 28 100.0 33 ............................ CCGCCCTTCGAGTCGATCCGTGATTCTGCGACG 462470 28 100.0 33 ............................ CGTTGTCGTCACGCACGACGCGACCGGCGCGCG 462409 28 100.0 33 ............................ GCCATCAAGTCGAAGGCGGGTTTCCAGACCGCG 462348 28 100.0 33 ............................ GCAAAAAGAGGCTGCCGCGATACGCAACCGGAC 462287 28 100.0 33 ............................ CCCGGAGCCCGCGCCGGCTGTCGACCCGCCGGC 462226 28 100.0 33 ............................ CACGAGCGGCGATAACAAGGGCTTCGATGCGTG 462165 28 100.0 33 ............................ GTGGACGAGCTGGACGCAGCGGAGGCAAGCTGG 462104 28 100.0 33 ............................ TCGCTGGCGCGACGTGGACAGTAGAAGCGGCGC 462043 28 100.0 33 ............................ GCCAAGTCTTCGCCCGGCTGACTCACTTGGATG 461982 28 92.9 33 ..........C...C............. TTTTGAGTTTTACAGCGGCGGCCAGATCGTCGC 461921 28 92.9 33 ..........C...C............. CTCGACGGTCGTCGACATCGGTAACGAGAGAAT 461860 28 92.9 33 ..........C...C............. GCGGCTCCGGCGGATCAGACAGCGGAGCCCACC 461799 28 92.9 33 ..........C...C............. CCTTCCGCTGGGTCCGACGTACGAACGAATCAA 461738 28 96.4 33 ..........C................. GCGGATTTTGGGGAAGGGCGTGCGGCTGGGCAG 461677 28 96.4 33 ..........C................. TTCGCCAATGCAGTCGGTGCCGGTGCAGTGCCA 461616 28 96.4 33 .........................A.. TCCTGTCTTCTTTTCCTCGTGGAAGTGGCTTGA 461555 28 92.9 33 C.........C................. CCGGCGCGACGGCTCACGCGTCGCAATGGCATT 461494 28 92.9 33 ..........C..............C.. CTATTTGAGGCTCATCCTAGCGTTGAGTGGTGT 461433 28 89.3 33 ..........CT.............A.. CGCCAGTCGGGATGATCGCGAAGTGATCCGATA 461372 28 89.3 33 ..........C..T...........A.. CAGGAAGCCCCGGCGCGCCTGCGTATCGAGCGC 461311 28 92.9 33 ..........C..............A.. GAACATGGTCGCCGCGTACTTCCGGTTTGTCAC 461250 28 96.4 32 .........................A.. CCGTGCGACCGCGACGACTCGCGCATCGGCGC 461190 28 89.3 33 ..........C...C..........A.. CGACGAGCGAGTTATTCAGTGCGACGTGTCCCT 461129 28 92.9 33 ..........C..............A.. CCATTGATCGGTGATGACCTTCGCATCGTGTGC 461068 28 89.3 33 ........T.C..............A.. CCAGCTATTCAACGATGACGACGTAGAAAAGTG 461007 28 85.7 33 .......T..C...C..........A.. CCATGCGGATTCCTGTGCAGTGATAGTCGACGA 460946 28 82.1 33 ..........CTC.C..........A.. GGGCGTGGACCTGCTCGCACAGAATCTGTACGA 460885 28 85.7 33 ..........C...A.T........A.. CGCGTTGATGGCGTCGGATCTCAAGGCGGCGTA 460824 28 82.1 0 ..........C..ACA.........C.. | T [460798] ========== ====== ====== ====== ============================ ================================= ================== 30 28 94.1 33 GGTTCCTCCGTGTGTGCGGAGATAGGCC # Left flank : TCGTGCGGCGCGAGGCGGCGCGCGTGTTTCGCAAGAAAGCGGTCATTCCCGCGATGATCGATCGCGTGAAGCAGGTACTGCGTGTTGACGAGAAGCGGGAGGCGGGCGATGGCGCTGGTCGTCGTGGTGACGAGTGATGTCGCGGACCGGTTTCGGGGATTTCTCGGATCGGTGATGCTCGAAGTATCGGCGGGGTTGTATGTCGCGCCGCGCATGAACAAGGGCGTGCGGGAACGGACGTGGTCGGTGCTTGCCGACTGGCACGGGCATGAGCCACGAGGCAGTGTGGTGATGGTGTGGCGGGATCTGGATGCGGTTGGGGGGATCGGTATCTCGCATCTCGGTGCGCCGCCGAGAGCGCTTGTGGAAGTCGATGGGATGTATGTCGTCAGGCGGATGATGACGGGGTAGGTGGGGTGGTTTCGTTCTTGGAAATTTGGATGGTTTTGTTGGATGCTAATGGGGTATTTGCCTTTTCTGTCATGGGGTTATGAGGGAGA # Right flank : CCAACCACTGGCGCTTCACCCCACAACCCCAACCCCCACCCGCTCCACCCCACCGCCCACCGCCCGCGCCCTTCTCCCCCCCGCCACAAAATAATCCGTCTCCACCCTCTCCAACGCCGCCACCCCCCGAATCCGATCCGCGATCTTCTCCGCCAGCATAATCGTCGGCGCATTGAGATTGCCGGTCGTGATCTGCGGCATGATCGACGCATCCACGACGCGCAAGCCTTCCATCCCGTGCACGCGTCCTTCGCCATCGACGACGGCCATATCGTCATAACCCATCTTGCAGGAACACGAAGGATGAAAAGCCGTCTCCGCCTTCGCGCGCACGAACGCATCGAGCTCGGCATCGCTCTTGAGATCATCGGAAGGATGAAGCTCACGCCCGCGATATCGCGCCAAAGCCGGCTGCCGCATGATCTCCCGCGTGATGCGAATCGCATCGCGGAACTCGCGCCAGTCCAACGCATCGGCCATATAGTTGAAAAGAATGCCGG # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.46, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCTCCGTGTGTGCGGAGATAGGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [33-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA //