Array 1 845-2331 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABALJ010000027.1 Neisseria meningitidis strain 108225 NODE_27_length_26795_cov_33.987446, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 845 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 911 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 977 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 1043 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 1109 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 1175 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 1241 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 1307 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 1373 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 1439 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 1505 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 1571 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 1637 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 1703 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 1769 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 1835 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 1900 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 1966 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 2032 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 2098 36 100.0 30 .................................... TCCCGACATTGACGGAAAAACCCGAAAGCA 2164 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 2230 36 100.0 30 .................................... ACACGGTCGTGTGCAACGACAGCGGGCTGA 2296 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 23 36 99.8 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //