Array 1 2-518 **** Predicted by CRISPRDetect 2.4 *** >NZ_RZUT01000030.1 Escherichia coli strain 102B6 102B6_S78_R1_contig_30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 63 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 124 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 185 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 246 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 307 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 368 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 429 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 490 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TG # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 19164-18097 **** Predicted by CRISPRDetect 2.4 *** >NZ_RZUT01000069.1 Escherichia coli strain 102B6 102B6_S78_R1_contig_69, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 19163 29 93.1 33 .....T...T................... GTAGTTTTGTGTCTTTATGTACCTCAGTTTCGT 19101 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 19040 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 18979 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 18918 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 18857 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 18796 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 18735 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 18674 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 18613 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 18552 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 18491 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 18430 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 18369 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 18308 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 18247 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 18186 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 18125 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGATAAACCGGTTTTTTAATTGGTTTTCCGGCTTTTTGTTT # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //