Array 1 18723-20078 **** Predicted by CRISPRDetect 2.4 *** >NZ_CEDO01000037.1 Streptococcus suis strain LS2D, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 18723 36 100.0 30 .................................... CTTGGTCCTTGCGGAGCAGGTCAAAAGCAT 18789 36 100.0 30 .................................... GCAAAGACCCAATGTTACTTCATTCCATAT 18855 36 100.0 30 .................................... TATTCCTCCACAACAACTACATCAAACGCT 18921 36 100.0 30 .................................... CATGATGAATGGATTGAAGATGATAAAAGT 18987 36 100.0 30 .................................... CAGCAGATACTAACGCCGAAACTGGCGATA 19053 36 100.0 30 .................................... CTGTTGCCAGGCATGGAATACAATCATTGC 19119 36 100.0 30 .................................... AGGGTGGCCGTGCCTCTACTAAGTCCTCTG 19185 36 100.0 30 .................................... AATTTCCATATCCAGTCAATCACAATCAAG 19251 36 100.0 30 .................................... AATTCACGAATCCGTTCACTATGATGAACT 19317 36 100.0 30 .................................... GGATTCTAAACTAGACAGGCTTCGCTATAC 19383 36 100.0 30 .................................... CCTGCGCTGACGTGACGCGCTTGTAGGTTG 19449 36 100.0 30 .................................... ATCAGTCCCTCACTCTTCTTCAAACGGTAG 19515 36 100.0 30 .................................... TTACTAAGTAAGTTTGGAGCGGGCAACCGC 19581 36 100.0 30 .................................... TAAGATTAGACCAGTCGACTTCCACTTCAA 19647 36 100.0 30 .................................... TTACGCTTCTACAATTCATAATATCGCAAA 19713 36 100.0 30 .................................... TTTGCTACTGGATGAGCTTGAAAAAGCGCA 19779 36 100.0 30 .................................... ATGTTTGACAAATTCTACTAGTGTTGAGGA 19845 36 100.0 30 .................................... TCCAAACACTCGAGAAAAAGCAGTCCCAAT 19911 36 100.0 30 .................................... AACTACTCAATTAATCGGAAACTTAAAAAT 19977 36 97.2 30 ...........................C........ GACCCCGTCTTTTTCTTTCTTCATTCCATA 20043 36 94.4 0 ..........C...T..................... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.6 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTCTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTTGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGATTTCTTGTCTTTATCAATGTGTTATCTTATTTGACGGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATGGTAAAATAAATACATACAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAGATTTTGTGACAAAAAATAGTCTACGAG # Right flank : CTGTTAAAAGACAAATTGATAGGGTAGTTAGTTTTAGAGTTGTGTTGCTCTAAAAAGTTCTTTTAATTCTTAAAAGCAATGTAGCAAAAATATTTAAGTGTCAAAAAGAAAGGGGATTGTAGATGGATTCAAAATCAATTATTATAACTTCTGGTTATAACAGTAGTAGTGAATATTTTAACTTTAATCGTCAAAATAATTACCAAAATAATTGAAAGTAAAAAGTATAGATGAATTTAATTTAAGCTTCATTTTTTTAGGATGAAAACTAGTGCACAGACAAGTAATTCTCTACCATAAACTTTCAAAGTTAAAATGATGATTAACAACATCCAATTTTCCTCCAAGATTTCTAACTGACTCTTGTCCCACCCCCTTTTCCATGCTATACTATATGTATTCGTTTTACTTCAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACGGACGGGATGATTGTTGGGCTGGGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.80,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //