Array 1 981055-982547 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035917.1 Salmonella enterica strain S44712 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 981055 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 981116 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 981177 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 981238 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 981299 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 981360 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 981421 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 981482 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 981543 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 981604 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 981665 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 981726 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 981787 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 981848 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 981909 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 981970 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 982032 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 982093 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 982154 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 982215 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 982276 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 982337 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 982398 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 982459 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 982520 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 998679-1000521 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035917.1 Salmonella enterica strain S44712 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 998679 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 998740 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 998801 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 998862 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 998923 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 998984 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 999045 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 999107 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 999168 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 999229 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 999290 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 999351 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 999412 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 999473 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 999534 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 999595 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 999656 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 999717 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 999778 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 999839 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 999900 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 999962 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 1000023 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [1000065] 1000065 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 1000126 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 1000187 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 1000248 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 1000309 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 1000370 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 1000431 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1000492 29 96.6 0 A............................ | A [1000518] ========== ====== ====== ====== ============================= ================================= ================== 31 29 98.4 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //