Array 1 20574-20969 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSAR01000020.1 Bifidobacterium longum strain AF11-12 AF11-12.Scaf20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 20574 29 96.6 32 ............................T CGCGTACGCGGAGCCCGAGGCGTGACGGATGC 20635 29 100.0 32 ............................. TCTTCTCGCACCAACGAATGGTGGATGGGCGT 20696 29 100.0 32 ............................. AACGGGGAATGGTACACCACACTGCCATTGCA 20757 29 100.0 32 ............................. GCGACTGATTCACTGGATGGGGTGGTTGTCGG 20818 29 100.0 33 ............................. CTTGACCTCGCTCAGATCGGGTTGACCAAGGAA 20880 29 96.6 32 ............................T AGGCGACGGGCTCGACCTGAAGCAGATCGAAT 20941 29 93.1 0 ........A...................C | ========== ====== ====== ====== ============================= ================================= ================== 7 29 98.0 32 ACCTACCCCGCAGGCGCGGGGATAAACCG # Left flank : CGGATCCGAAAGCATCCAAATGGTCGTTGAACGGCATGGACTACCGCGGGTACGCGAAACCCACGCGCATGGAACAAGCCTCATGGTACGCATTCGGCCTATACGCCTACCACCAGCAAGGCAACCAATACAAACCCATGTACAAGGAAGGCGAACGCTTCAACAAAGCATTACGGATATTGGCGGATACCGGCGAAGACGTTGACGAACTTTACCGGAAACTGTTGAACACCCACAATATGCAGGAAGCCGCACCATTCTGTCTGAGAATAATCCGACTGTTGAACGAGCACGACATTCCACTGGACCACGCCCTACTGGCATTGGACTTGGCCAGACTCAACAAACCGGACTCCGCAAACATGGTGCGACGCGACTGGAGCCGACTACTCGACTGATTGTCCACCAGATTGCCAGCACTGGACAATCGGCTCAGAAAATAGGTAACAAATTTGCATAATAGACCCATGCATGGTCTCGAAAACGTTGAAAACTAAACT # Right flank : ATTGGCGATGGGGTTGTTCGCGGCTTGGCGTGTATTTCGTCAAGTCGGTGTTTCGTGTTTAGTCATGTATTTTTTTCGGGTTTAGGCAG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCTACCCCGCAGGCGCGGGGATAAACCG # Alternate repeat : ACCTACCCCGCAGGCGCGGGGATAAACCT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 4255-5378 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSAR01000012.1 Bifidobacterium longum strain AF11-12 AF11-12.Scaf12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 4255 28 100.0 33 ............................ GCAATGCGCATGGCGGATTCGCGGTGGGAGACC 4316 28 100.0 33 ............................ ATAGATGCGAAATACAATGTTATAGACGACCTC 4377 28 100.0 33 ............................ TAACGCGCAGCATGATCGTGAGTCCCCAACACC 4438 28 100.0 33 ............................ ACAGTGCGATGTCGTGCATCACGGTGTGGTATC 4499 28 100.0 34 ............................ GCAAGTGCCGGAATCAGCTTGGTGGGCAGGGTGA 4561 28 100.0 33 ............................ CGGTGCCGTCCGGACGTGTCAACGGATGGTTGA 4622 28 100.0 30 ............................ GGGGCTTACTCAGTACGAGATTCAGACCCT 4680 28 100.0 33 ............................ GTCGTCAACGTCGACTACCACCCAGATATTTTC 4741 28 100.0 33 ............................ TAACCGAATCGATCACATTCGACAACATCAAGG 4802 28 100.0 33 ............................ GTATGCCGCGCGTAGTCTTGCAGCCTCTCAGGT 4863 28 100.0 33 ............................ GAGCGAAGCTGTGATGGCCATGGGCGAGGATGC 4924 28 100.0 33 ............................ TGAGGTACTCACAATGGCCGACGAAATGAAGGA 4985 28 100.0 33 ............................ GATCGGCCTGCCATCGGAATCGGTCTCCTGAAC 5046 28 100.0 33 ............................ GAACCCCTTGGACGATGCCATCGAAATCACGGC 5107 28 100.0 33 ............................ GTGGACGACATGACCCCCAAAACGAGGAACGTC 5168 28 100.0 33 ............................ GGATGGTGATAGCAATGGCAGCACGAAACCGCC 5229 28 100.0 33 ............................ GCGACCAGAACGCCAAGCACGGTGAGCATGACG 5290 28 100.0 33 ............................ GCAGATCACGTCGGTGGGACGCAGCTTCATGGC 5351 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 19 28 100.0 33 ATCTACCCCGCACACGCGGGGATAAACC # Left flank : CGAATGCGCGACATGATGCAGGACGGCAGACTGCTGGAACGTTGCGTACATGATGTTTCCACTCTCCTCTCGGAGGAGCCCGATAACGAGGACAATTGTTCCGTCTGGACTGGCGGGCAACGATACGGGAAAGCCGGTCAATCGTGGGCACCGTCGTGATACGACTCGAAAGCGCTCCACAAGGACTGCGCGGACACCTATCCCTATGGATGGTGGAAATCAGCAGCGGCGTATACGTCGGAGACCTCAACACCCGGATACGTACGCGACTCTGGCAACGAGTCCTCTCGGAACTCGGTACGGGCAGAGCGACGATGGCATGGCATTCCCAGCATCAGCTACATGTCAGCAGCCAAAACGGAAAGAAGACGATAACCGCTTTCGACGGAACCATCCTAATGTCCAGACCGCCTAAAGCCAAAGACAATACGGCCTGAAAACAGGTACGCAATTTGCATAAACAGCCCTCGCATGGCATTGAAAACGTTGAAAACTAAACT # Right flank : CCCCTGTACCAGTTCACGATTGCCGCAATCATCCATGAGTGGGTGCAGGAGCATCTTGAGGAGGTGGAGAAGTAGATGGCGGGTAACTCAAATCTGGGTGCCGCGAAAGACGCAAAGAACGACGAGTTCTATACGCAGCTAACGGACATAGAGAAGGAGCTTCGTCATTATCGCAAGCATTTCAAGGGCAAGACGGTGCTCTGCAACTGTGACGACCCGTTCGAAAGCAACTTCTTCAAGTATTTCGTATTGAACTTCAACCGCCTCGGGCTGGAGAAGCTGATTGCCACATGCTATGCAACGTCGCCCATCATGGGACAGCAGCTTTCGCTGTTTGACGTTGTGGGCGGCGAGGAGGAACAGCGCAACAAACCATACAAAGCTGTGGTGACGAAGGTATATGACACGACGGGCGATGGCGGCGTTGATATGTATGACGTCGCGGAGCTGTTCAAGCAAGGGGAAAATGAACTTGTCGAGCTTGAAGGTGACGGAGATTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTACCCCGCACACGCGGGGATAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA //