Array 1 64121-64736 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLZV01000028.1 Clostridium sporogenes isolate 1990 VT94_contig028, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 64121 30 100.0 36 .............................. AGGAGATGAATTAGAATTAGTATTAGAAGGTGATGA 64187 30 100.0 34 .............................. CAATAATTGCAAAGGAAAATAATAAGCTAAAAGG 64251 30 100.0 35 .............................. TCATTTTGTGAAAATATATAAATGCATACAGTATC 64316 30 100.0 34 .............................. CAGAGTATTATAGGTTATGAATGGGTTACTGAAT 64380 30 100.0 35 .............................. GAAAATGAGCGTAGAGCAAATGAAGCAGTAGAAAG 64445 30 100.0 36 .............................. AGAAACACCTTCTATTACTTTAGGAAAAGTTATAAA 64511 30 100.0 36 .............................. TTTATTAAGTCCTCAAAATGCTTTCCATACGTTTCA 64577 30 93.3 35 .......CT..................... TTGTATTCATTTATTGTATTCTTAAATACATTCTC 64642 30 90.0 35 ........T......AG............. CCATAAATATCTAATACAGAAAACTTAGAAGATAC 64707 30 86.7 0 A....G......................GC | ========== ====== ====== ====== ============================== ==================================== ================== 10 30 97.0 35 GTTGAACAATAACATGAGATGTATTTAAAT # Left flank : AAAAGCCTACATTCATGTGTTTACTTTGTTTTTTGTAGTAAATATTTATGATATGATTGTTCTAGATATAGGTCTTTTTTGTCACAGTAAAAAAACTAGAATACCTGGTACAGAAGATATGGATAAAGAATATAGAAATCCATGGCATCATATAAAAGGAGCTGGTATTGGAACTATAATAGGTGCTGTAGTAGCATTATTATCTGGAGGAATGGTTCATTTCATATCAATAATATAGTATTTAAGCAGAGAACCCAAATCTACGATTTGGTGTGAGTCACTTACTTCTTTGAGGCAACGAGAAGGAGTTTTATAAATTGAATTTTCCCAGGCGTAATAAATTTTAAAACCTATTCTAGCTATTGAAATATAAGGCTTAGAGTAGGCTTTTATTATGTATTTATAAAAAATGGGAATCGGTTGGAAAACTTTTTATAAAACCTTGTAAAATCAATAGTTGTATGATATTCTTAAAAATAAGTAATGGCTATTTTACTATG # Right flank : CAGAGAACTTTAATATGTAATTTGGTGTGAATCGCTTACTCCTTAGAGGCAACGAGAAGGAGTTTCATAAATTGAATTTTTCCAGGCGTAACAAATTTACAAACCTATTCTAGTCATTGATATATAAGGCTTAGGATAGGTTTTTGTTTTATATTTATTAAAAAACATAATCACTTGGAAAACTTTTTCTAGAACCTTGTAAAATCAATACTTATATGCTATTCTTAAAACTAAGGAATGGCTATTTTGTTATGATTGAACAACAACATGAGATGTATTTAAATCCTTCTACGCGTTACGGTGTGTTGTAGCCTTTCGATTGAACAACAACATGAGATGTATTTAAATCCCGTTATGGATATCTATATACGATGTACACGAAATTGAACAACAACATGAGATGTATTTAAATGCTATATTATAATATTTGTCCTTAGCTTCTTTATATTGAACAACAACATGAGATGTATTTAAATTGTTGTTATAAGTACCTAATCTTG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 2 64990-65607 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLZV01000028.1 Clostridium sporogenes isolate 1990 VT94_contig028, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 64990 30 100.0 34 .............................. CCTTCTACGCGTTACGGTGTGTTGTAGCCTTTCG 65054 30 100.0 34 .............................. CCCGTTATGGATATCTATATACGATGTACACGAA 65118 30 100.0 34 .............................. GCTATATTATAATATTTGTCCTTAGCTTCTTTAT 65182 30 100.0 36 .............................. TGTTGTTATAAGTACCTAATCTTGTAACTACTGTTA 65248 30 100.0 36 .............................. ATGTAATATGTTCCTACTCCCAGTACCGTTCTATTA 65314 30 100.0 36 .............................. AATAAAATAGAGGTGCGGAAATCGCTATTTATTTCA 65380 30 86.7 36 G.......GT.....A.............. AATTGTCCAACTTTTCCATCTGGAATTGCTGGATTT 65446 30 86.7 35 G.......GT.....A.............. GAAGCTTCTGTACCGTAAACGATAGAGCCATCTTC 65511 30 86.7 37 G.......GT.....A.............. TTGTTAGCCATAAAATTTTATCTATATAATTAAACAT 65578 30 83.3 0 ........TT.....AG............C | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 94.3 35 ATTGAACAACAACATGAGATGTATTTAAAT # Left flank : TACTTTAGGAAAAGTTATAAAGTTGAACAATAACATGAGATGTATTTAAATTTTATTAAGTCCTCAAAATGCTTTCCATACGTTTCAGTTGAACCTTAACATGAGATGTATTTAAATTTGTATTCATTTATTGTATTCTTAAATACATTCTCGTTGAACATTAACATAGGATGTATTTAAATCCATAAATATCTAATACAGAAAACTTAGAAGATACATTGAGCAATAACATGAGATGTATTTAAGCAGAGAACTTTAATATGTAATTTGGTGTGAATCGCTTACTCCTTAGAGGCAACGAGAAGGAGTTTCATAAATTGAATTTTTCCAGGCGTAACAAATTTACAAACCTATTCTAGTCATTGATATATAAGGCTTAGGATAGGTTTTTGTTTTATATTTATTAAAAAACATAATCACTTGGAAAACTTTTTCTAGAACCTTGTAAAATCAATACTTATATGCTATTCTTAAAACTAAGGAATGGCTATTTTGTTATG # Right flank : CAAATTAAAATCCATGATTTTTTTCCTTCAAAGTTGTTTAGTTTTTAGAGCGTGGTATTTTATTTAATTGTATAAAGTACATTAGTTAAAACTTATTTTTTCAAATGTACCCTTTTCTATGTGTAATTCAATATCAATATCTGCTTTTTTATAACCTACTAATTTTATACGATTATTACCTTTTTTTATTGGTAAAGTTAATGATGTTGTTCCTTTCATAGTGGCTTTATCTGTATTTTCTACAAGATTAACAACCGTATTGTCAGGAGATATTAAAACGATTTTTGCCTTTCCACTTTTTACTGATAAGATATATGGAACTTTCAAATCAAAATCAGATCTGTTACTTTTACTTATAACTGCATCATTTATATTTGGCTAATATAAAATTTATCGTAGTTTTACTTATTACCATAGTTTTGTTTCTTTGTCAAAAAGCAATGAATCATAAATTAAATTAATAAATCTAGAAGATTTAACGGTGTTAAACTTCCTATGCC # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACAACAACATGAGATGTATTTAAAT # Alternate repeat : GTTGAACAGTAACATAAGATGTATTTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //