Array 1 5685-6795 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBCS010000002.1 Photorhabdus heterorhabditis subsp. aluminescens strain Q614 scaffold_0002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5685 28 100.0 32 ............................ TATTTATCAAACATTGCTGAATGAAAAGTTAC 5745 28 100.0 32 ............................ AGCTTCGCAACCTCAGCCCCCCGCCCCTCAAC 5805 28 100.0 33 ............................ GCCACGGTGCCGGCGATCAGGGTCATTGTTAAC 5866 28 100.0 32 ............................ AATTAAAATATATAAAAAGTTTATGAATAACA 5926 28 100.0 32 ............................ GAATGCTCAATGAACTGCATCAACACTTCGAC 5986 28 100.0 33 ............................ AGCATGGCAACATCAAGTAAACGGAAGAGTTCT 6047 28 100.0 32 ............................ GAAAGTCAGGAAGATGCGCGTCGATAATAACA 6107 28 100.0 32 ............................ AAACAGGAACAAATAACGAGAATATATATGTC 6167 28 100.0 32 ............................ GAAAAAGTCGGTACCAAGGTAACCAACAATGA 6227 28 100.0 32 ............................ GACAAAGAGCGTTACAGGAGCCAAATCTGTAT 6287 28 100.0 32 ............................ GAAGACTGGGGAACCATAACGGCGATTGTTCA 6347 28 100.0 32 ............................ AGTGATTAAAAACCGGCTCGTCAGTGGCTGAA 6407 28 100.0 33 ............................ ATCCCGGCTTTAGCATTGATCCCACTTCTGGCC 6468 28 100.0 32 ............................ TTCCGTCTAAAATGGCTCGAATAGTCATTATA 6528 28 100.0 32 ............................ AGTTGGCGCCCCCATTCCGTGGCCGTCAAACT 6588 28 100.0 32 ............................ TCTCTCATATCCCCAGCTGAATGCTACAGACA 6648 28 100.0 32 ............................ GCGCTTATAACGAGAAATCAGGCTATCAATAC 6708 28 100.0 32 ............................ GTCAGCGGGTGAGACGCGATAGGTTTTGTTTG 6768 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 19 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATGATTTGCAGTCTTTATCTTGGTTAAAAGGACTCCGGGATTATGCTGAGGTGATTGATATCAAGCTGGTACCTAAGGATGCTCGATATCGTCGTGTTAGCCGAGTGCAGGTAAAAAGCAATGTTGATAGGATTCGCCGTCGTTCGATTAAAAAAGGATGGTTAACGGAGGAACAAGCCTTGCAACGCATTCCTATCAGCAAGGAACAACGCACTCATTTACCGTTTCTGTACCTTAAGAGCTTGTCATCAGGACAAAGTTTTCTGTTGTTTATCAAACAAGGGCCAATACAAGACAAACCAACTCCGGGAGTTTTTAGTTCGTATGGATTAAGTTCATCAGCTACCATAGCTACCATCCCTTGGTTTTGACCCTTTTTTAGCGGCTAATTATAACTTATTGATTTATTTAAGGGATTAGCCGCTGCTAATAAAAAGGGTTTTTCTGCTTTTTGTCATTATGTTCTTTAATAATCAGTAAATTAAAGTTAGTATCTAACA # Right flank : AAGAATAAACATGAAATACAGTCCTGTGAGGGGTTTTTCGTCACTGCCGTACAGGCAGCAGCGCACTCGATTGAATGCGCTAAATGCTTCCGTCTAAATATGCATCATTTCTTGTGCTTCTGAGCATATTCTTCACTATTAACCCATTGATGATCCTTTTCCCAAGTAAATAACCAATTACGGGTTGGTCCTGCCATGACATTGAGATAGTAGTTGTCGTAACCAGCAATGGTTGCTACTGGATGATAGCCTTTGGGAACCATGACCACATCTTTGTTGTAAACAGCCATTGATTCATCCAGTGAACGGTCGTCGGTATAGATGCGTTGTATACAGAATCCCTGAGGTGGGTTTAAACGATGATAATAGGTTTCTTCCAGATAGGTTTCCTGTGGTTGATTATCCGTATCGTGTTTATGGCTGGGATAGGAGCTGGTACAACCTTCATCGGTAAAGACTTCAACCACCAACAAGCTATCAGCCGGTTTGTTATCCGGTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 178700-178907 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBCS010000002.1 Photorhabdus heterorhabditis subsp. aluminescens strain Q614 scaffold_0002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 178700 28 100.0 32 ............................ TGTAAGGGGCGAAAGAATGTTTCAGAGGACAT 178760 28 100.0 32 ............................ CTTGGGCAATATTGGCTGGCTGCAATAGCAAC 178820 28 100.0 32 ............................ ACGTCACGATGGAATTTAACAAGTCGGGTATT 178880 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 ATGTACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATAGAGAACGATGTCATAGAGAACGATGTGACCGGGGTGAGTGAGTGCAGCCAACAAAGAAGCAACTTGAAAGATGACGGGTATATGTGAATTATTTAATTTCGATGAGTATTGAATCGGGTGGTGTAGAAAACTTCTTAAGTCATAATCGTTAATTGATAGAATTCTGTAAATAACTGGAGCTTGGATTAATGATTTCTGGACGATTTAATATTTTTTGCATTCTGCCATTTATTTCCAATAATAACTTTATGATTCCGGGGGAATGTATTTGCATACTGTTGTTTTCTTTTGATCGGCACGGGTTTTATTGGATTGGGAAAGGGGTAATGTAACTTAAAGGATGGTATTTCTTTGCACCTTATTTTTGACCCTTTTTTTACAGTCAAATTTAATATATTGATTTTTAAGGGGATATTATTTATCTCGTAAAAAAGGTTTTTTTTAAATTTTTGTAGGTAACTCTTTAATAGTCAGTAAGTTGAGGTTAATATGCAACG # Right flank : ACACGATCACCAGCATTGAGCGGTATTTGACACTCCCTACACCCCAGCAACTACCGACTGATTTTAACATCCCAAAACTGGCATTTCCGGCCAGCCATTACGGTGGTGAACAAATTGGATTTGGATTCTGAATAAAAAAATAGCCCCTGTCTGGGGCTTCCTCTGCTGATAACTTATTACTCAGGTAGCATTTCCATTATAATCTGTCCCGTATCTGACACGGTCACTTTCGGTATTAGCGCTATAATTTTGCCTGTTGTTATATCTACCTTCGCCGCACGAGAATCTTCTACTATCCTTTCGAATATGCTTTTACCTTTGAATATTGTTTGTACGACAGCATAAGATTGTTGTTGATGGAGCGCTAATCGGTAGGTTGTCTCAATATGCTGATAACTTGAAACATCAAACATATTACTTTTAATGGCTTTTTCTAGCGGCTTGTAAGAGTTATTTTCGCTGCTAAAGTTTGAGACAAAGTTATCCAGATTGATTAAGTT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched CTTTACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 6891-6203 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBCS010000015.1 Photorhabdus heterorhabditis subsp. aluminescens strain Q614 scaffold_0015, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 6890 28 100.0 32 ............................ CTAAAATCAGACAGCATTTAATCGAATTGAGC 6830 28 100.0 32 ............................ AATAATTACACGATGAGTAAAGTCGTCGGGGT 6770 28 100.0 32 ............................ AAAGGAAAATACTTCCATCAGCACATCAAAGA 6710 28 100.0 32 ............................ ATACTGCTTATTGATTTCAACTTGTCGCGCGT 6650 28 100.0 32 ............................ TATTTTACCTCCCCTGATAGCCTGTGCTTATT 6590 28 100.0 32 ............................ GTATTAAAGACGCTCGTGACAGAAATCCGCGC 6530 28 100.0 32 ............................ GGTATTGATCGTTTTCGTTGGGACACCTCGCA 6470 28 100.0 32 ............................ GCGACGGACTATACAACTGTGAACTCGACACA 6410 28 96.4 32 ......C..................... AATTGAATGTACCGCGTGCGTCATTGTTGTCT 6350 28 100.0 32 ............................ GTCATCAATTTCACCGAACAGATGAAGCTGAA 6290 28 100.0 32 ............................ TAATGGTGCATTCCAGTAATCTCTGCAATGCA 6230 28 89.3 0 ......................G...GT | ========== ====== ====== ====== ============================ ================================ ================== 12 28 98.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATAAATTATTTAAAGGAATTCGAATTTTATTTGTAGAGCAATAATATTACTTTCATTACTTTCATTACTTTCATTACTTTCATTACTTTCATTACTTTTATCCAGAGTTATTTAATTCTATTTTTATATGGTAATTATACAAGAAGAGAATTAAATATGATGTATTCAGTTAAAAGTGGCTAATATCACACGTTTGTAAATATACTTAAAAATATTAGGTCAGCATATTCTAAATAGAGTGAGAATAAAATTTATCTTATTTGATGGTTCTATCATGGCCGAACGTTTTGTGATCAATTCTTTCACTCTGCATAGACATTAGAACGGGCGAGTTAAGTGAGTGATGGTATTTTTACTAAACCCTATTTTTACCCTTTTTTTGAGGTGAATTATAACTAATTGATTTTATAGTAAAATTAATTGTCTCTTATAAAAAGGGTTTTTCACTTTTTAACAGTTATGCTCTTTGAAAATTAGCAGGTTAAAGTTAATATGTAACA # Right flank : ATAATCACTCTCGTTCGGTAAAAGCCTTATATTGTAAATTGGTAAAGAATTGTAAATTATTATGATTTGCATGTGCGATATTTTACATTGTATGAAATTTATGCATTATGTTTTACATAAGTTAAATTAACTATTCAGGTAATTCTTAATTATGGATAACAGCTTTTCTCCAAGTGACCTCAAAACGATTTTGCATTCCAAACGCTCTAATGTTTATTACCTGCAATATTGCAGAATATTAGTTAATGGTGGCCGTGTTGAATATGTCACTGATGAGGGAAAACAATCATTATATTGGAATATTCCAATTGCAAATACCACGGTAATTATGTTGGGAACGGGGACTTCTATTACTCAGGCGGCAATGCGTGAATTTGCTAAAGCAGGTGTTTTGGTCGGTTTTTGTGGTGGTAGCGGTACACCGCTGTTTGCAGCTAATGAGGTTGAAGTTGATGTATCTTGGCTGACACCACAAAGCGAATATCGCCCTACTGAATATT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 22590-20820 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBCS010000015.1 Photorhabdus heterorhabditis subsp. aluminescens strain Q614 scaffold_0015, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 22589 28 100.0 32 ............................ ATTCCCAGCACCAAATCGAACTGTGGGTTATC 22529 28 100.0 33 ............................ CGGATGAAACCCATTATCTGCGGGTAAAATAAC 22468 28 100.0 32 ............................ TAACACAGGCGCGGCTTTACCCACAACACTCG 22408 28 100.0 32 ............................ AAATCCTCGTCTCTTACTGATGCATCAAAATG 22348 28 100.0 32 ............................ GTAAACGCCATGTGTGAATCTGTTGTGCCGAC 22288 28 100.0 32 ............................ TCTGGATTTATTCTCATCAACAATGAGATGAT 22228 28 100.0 32 ............................ TGAGCCTGCCAGAGGTGCACTTGAGGATATTG 22168 28 100.0 32 ............................ TTGAGCAAAATTCTGTCGCGCCGCGCATTGTC 22108 28 100.0 32 ............................ TATGCTGATTTATGGTTCATTTGTGATTGGGT 22048 28 100.0 32 ............................ CCGCAGACGCCCATTTATGGGGGTGGATATGA 21988 28 100.0 33 ............................ TCCGGCGTTAATTTAGCGTTATTCTTATTTAAA 21927 28 100.0 32 ............................ TTACGGGGGGTATTGGAAGGAACGGACTGTAA 21867 28 100.0 32 ............................ GTCACGGCGGCGGTAATTTGACTTTCGGTTTT 21807 28 100.0 32 ............................ GTTCAAGCGGCGTTATCTTTACTGTCCTTCCA 21747 28 100.0 32 ............................ TCTGAAATCTCTTCTTGCGTCATGACAAGCGA 21687 28 100.0 32 ............................ ATTAACTCTTGTTGCTGTTGATGAAGAAGATT 21627 28 100.0 32 ............................ TAAAAACTCATATCTTTTACACAGTTCAAAAC 21567 28 100.0 32 ............................ ATCTTTTCTAGAATATGCTTCAATCTCACATG 21507 28 100.0 32 ............................ ACGCTCAATGGCAGAACGGAAGTCACACAAAA 21447 28 100.0 32 ............................ ATAAGGCAGCGCACCAAGTTCATGAGCAAAGC 21387 28 100.0 32 ............................ ATCCCGTTTCATCGTGTTCAAATTTCACCGGA 21327 28 100.0 32 ............................ ATAAAAAAGTCGCCGTAGCGACCTAATCATTT 21267 28 96.4 32 .............T.............. TGGATGGTGCGCGCATTCTTCGCGTGCTCTTC 21207 28 100.0 32 ............................ AGCAAAGATGCGTTAAAGAATTCAACCCAAGA 21147 28 100.0 32 ............................ AGAACACCAGAACGGCGCTCAGCAGTAGCAGG 21087 28 100.0 32 ............................ TAAAATGACTTTACTTCACAGAGGTAGAAGAA 21027 28 100.0 32 ............................ TTATTGCCGACTAATAGCGCGCGGCAATGACG 20967 28 100.0 32 ............................ AATAAACTATTAGCGGCGTCGAAGCCCAATGA 20907 28 100.0 32 ............................ GAAAGCGATCACAGGCTGGCAAATCCGTGTGC 20847 28 92.9 0 .......................T...G | ========== ====== ====== ====== ============================ ================================= ================== 30 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGCAGGTATGGATATTGTGATGGATCGTTGCCCAAAAATTGAAATCCCAAGATTGGGGCTGGAAAAGTAATATTCTCCAGTTTGCTACTGTTTAGTTTCCCATCAATGAGTGAAAGGAGCTTGGCGCTAATGTCTAAGTTGCCCAAACTTAAGAGGTTGGGTGGGAAACATCACTAGGTTCCAAATATATATGACTTATTCCTGATAAATATTTACAGGGTCCCGGAATCATCCGTCTCTGGATATCTTATAAACTCCATTTTTCACATTATATTACAATATATTAAGGAAAATTTAGCTATTTCTGCGACAGCTAAAAGCTACCAAATATTGCTATAAGGTATGGTGTTTCTACTGCACCCTAATTTTGACCCTTTTTTATCGCCAAATAATAACCTATTGATTTTTAATTAAAATAAAGTATCTCTTATAAAAAGGGTTTTTTCACTTTTTATGATTATACTCTTTAACAGTCAATGGATTAGAGTTAATATGCAACA # Right flank : ATGGTGAAACACGACGGATATTAGAGATGGAAATCCGTAAGACATTATGGATATGCATCATATTTTTGTGGTAATGGGCAACATCTATTGCTGAAGTTGGCAGGGATCATGATTGGAACATTGCTGAACTGGGTTCAACGCGCTCGTTGATACAACTTGTCGAATGTATTTAAAGCAATAGGCAAAAAGAGGCACAGATGCTTAGGCGGTACAAGTAGTTTAAAAACACAATAAAGGTTAGTTAATTGCGTAGTCGTGGAGCCAGTAACTGATTGCGGATGGATTCTGCTAGCTCGTCCAGAGAAGGTTGTTCTGGATGGTCATCTGATGTTTCGTAGGCTAATTGCGCTTCGGCTAAATAAGTATGTACGGGTTGGCCGTCATCATCTTCCATCACAACATGATACCAAGGAGCAGAACGCAAAGCAGCATTGGATGCAATGTCATCCTCTTGAGGTTGTTCCAGAGAATATTCCACATCAATGTCTACGATCACTCCC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 35732-37919 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBCS010000033.1 Photorhabdus heterorhabditis subsp. aluminescens strain Q614 scaffold_0033, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 35732 28 100.0 31 ............................ CCCGCAAGGTCATACATTAAGATATATTTCA 35791 28 100.0 32 ............................ ATGATGGCAATCACCGCCAGAATAACCAGCAT 35851 28 100.0 32 ............................ AACATGTAATGCACGGCCTAATGCTATAGGAC 35911 28 100.0 32 ............................ ATTTTGACAGATGCATATAACGGGAAGCGAAG 35971 28 100.0 32 ............................ ATCGTGAAACAAGCAACGAATACCGTCCATTT 36031 28 100.0 32 ............................ TGCTGTAAAAGGCGTGAAAGATGCTAGTGATT 36091 28 100.0 32 ............................ GCTGGAAACTTCGCAGCGAACTCCTGTCCCGA 36151 28 100.0 32 ............................ TTCAATGTCATCACTTCCTCGTTAATCACAAT 36211 28 100.0 32 ............................ GCTGAGATGGCTATCGACGCGGTGTGGCTGCA 36271 28 100.0 32 ............................ AACATCACGGGTGACGTCAAAATTGGCGGCAA 36331 28 100.0 32 ............................ TGAATCAACTCCTGAAGCATCGGCACCAGTAT 36391 28 100.0 32 ............................ TGAATCAACTCCTGAAGCATCGGCACCAGTAT 36451 28 100.0 32 ............................ TAGTGCCTCACTCAACGTTGAGTCCGGTCGGT 36511 28 100.0 32 ............................ GTCAATAAATAATTCGGCATCACATTTGCAGA 36571 28 100.0 32 ............................ TCTATCCTCATAATCAGGGCAAAGATCATTGC 36631 28 100.0 32 ............................ TTATCGAAATTTAACTGAAAGTACAACTTAGC 36691 28 100.0 32 ............................ GCATAAGAACATCATCAACAAAGACCACTTTA 36751 28 100.0 32 ............................ TCAAGTGGCAATAAATTTAGGTCAATGGGCAT 36811 28 100.0 32 ............................ AAACGACGCTTCTCCGCGCCAGTATCGCATCT 36871 28 100.0 32 ............................ ATTTCACGTTCGCTTTCCATTTCCCAGCCCTT 36931 28 100.0 32 ............................ GGCATGGGTGAATTGAAGTTATGGGATGGCAG 36991 28 100.0 32 ............................ ACCATACCAGAAGTCTTGACCATATCCATCAT 37051 28 100.0 32 ............................ TTGGCGTTCAACGTGGGACCGGGCGCCCCGCC 37111 28 100.0 32 ............................ ACAGGCTGGCAAATCCGTGTGCGTAGACTGAC 37171 28 100.0 32 ............................ ACGTGGGTTTTCTATGTGGATAATCATGTCAT 37231 28 100.0 32 ............................ TACCCGATACTGATAAGTCGATTCAATTTTCT 37291 28 100.0 32 ............................ TGCGACTTAATTTCCCAGATTGCCAGATTTCC 37351 28 100.0 32 ............................ ATCATATATTTCTCAAAACCCGGCAATAAACA 37411 28 100.0 33 ............................ GAACGTGAAAAACAAGCTGCAATTGATGCAGAA 37472 28 100.0 32 ............................ ACTCTATTTGACATTCTGTTTTGAATGCTGCT 37532 28 100.0 32 ............................ TCATCACAGAGTTTAGGGGTAGGGAATATTGC 37592 28 100.0 32 ............................ AAAGTGCTAGAAAAACTAATGAACGCCATGAT 37652 28 100.0 32 ............................ AACTGGGTACGTGTCTATAGCGTTAACATCAT 37712 28 100.0 32 ............................ TTGTACATACCCAACGCCGTTTGGAGCGTCAC 37772 28 100.0 32 ............................ TTCCTGCATGAATTCGGGATGATGCTGATGGA 37832 28 100.0 32 ............................ CAGAAGTTGGATTTAAGGTATATGCATCATAC 37892 28 89.3 0 .................T..T...T... | ========== ====== ====== ====== ============================ ================================= ================== 37 28 99.7 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TATTTGGGATACTCTCTTGGTGAAAAATGGCAGGGAAAAGGGCTGATGTATGAAGCTTTACAGCCAGCTATTCGTTATATGCAACGTCAACAGGGGATGCATCGGATTATGGCTAATTATATGCCAAATAATCATCGTAGTGGAAAATTGTTGGAACGATTAGGCTTTGAACGAGAAGGTTATGCCAGGAAATACCTGATGATTAATGGAGTCTGGCAGGATCATGTATTAACGGCATTGACGGATGAAAAATGGAGTGAAAAAAGTTGATGCTTAAGCTGTATTGCCACCAGATAAAGTGAAGCGGATTAGTAATGATGAATTAAATTACTGTTGAAAATCTGCCAGGTTCCCCGCACCTTATTTTTGACCCTTTTTTAAGAGGAGATTTTAATTTATTGATTTTCAATGGAATATTATTTCTCTTGTAAAAAAGGGTTTTTTCGTTGTTTTATTAAAATATACTTTAACTGTCAGTAAGTTAAGGTTAATATGCAACA # Right flank : AAGTTAATGATTTATACCCGTCATCTTTCAAGTTGCTTCTTTGTTGGCTGCACTCACTCACCCCGGTCACAGAGTTATCTATGCTCCCGGGGATTCGCTCCCTTGCCGTCGCGATGCATCTTGAAATCCATAGGGTATATAGCGTAATGAGCTCTAGTGCATAAGCATGTGTTTATGTATACTCGCCGCGCTTATTAATAAAGTGGATGATTAGTAATGAATAATATTACCGCCTTGTCTTTGGCTGCTGTAATGCTTACTAGCGGTTGCGCTACGATTGTGGGAGATAAAACTCAGCATATTCAGGTTGATAGTAATCCATCAGGAGCCACATTCTCCATCAAAGATGAGTTAGGCAGGGTTGTTGCACAAGGGAAAACGCCTCAAGATGTGATTTTAGAGAAGTCTGACGGGAGTTATTTTGGTAAGAAAGGCTATCTGGTCTCTTTTACTAAAGAGAATTCTGAGTCTGTAACGTTACCAATTAAAGCGAGCGCTAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //