Array 1 43-497 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCOQ01000233.1 Salmonella enterica strain NGUA-18_S6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43 29 100.0 32 ............................. GATTTACTAAGGTCAACAAGGGATTGAATTGG 104 29 100.0 32 ............................. CTCATGCGCAGCACTGGATCGAGAGCGAAGGG 165 29 100.0 32 ............................. GGTGAGAACAGGGTGCATGGGAGGGAATAATT 226 29 96.6 32 .....T....................... CGTTACAGCCAGTTCATGGAAAGTTTCAGGCA 287 29 100.0 32 ............................. ATCCCAAAACATCTTTCCCTGGTTCCTCTCAG 348 29 96.6 32 ......G...................... GGGATCGCGTTGGCGGTCGCATCCGTTGCCGT 409 29 93.1 32 .....A......T................ TACCAACAATTCAGCGTTACGCCAACGGTAAC 470 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 96.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGATAAACCGGGAGGACGCTACTATCGGATTCGCTCCGGGGAG # Right flank : TTGCATAATCATAATCTGTGTACCAG # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 288542-290644 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCOQ01000275.1 Salmonella enterica strain NGUA-18_S6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 288542 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 288603 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 288664 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 288725 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 288787 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 288848 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 288909 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 288970 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 289031 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 289092 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 289153 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 289214 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 289275 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 289336 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 289397 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 289458 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 289519 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 289580 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 289641 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 289702 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 289763 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 289824 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 289885 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 289946 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 290007 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 290068 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 290129 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 290190 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 290251 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 290312 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 290373 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 290434 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 290495 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 290556 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 290617 28 79.3 0 ..G............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 97.7 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 308277-310197 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCOQ01000275.1 Salmonella enterica strain NGUA-18_S6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 308277 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 308338 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 308399 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 308460 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 308521 29 100.0 32 ............................. ACGTGACCGCCGAAATGATTGCGGAAATCGCC 308582 29 100.0 32 ............................. CGCGCCCACCGTTCAGCCCTGGAAAAAGCGGC 308643 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 308704 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 308765 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 308826 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 308887 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 308948 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 309009 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 309070 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 309131 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 309192 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 309253 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 309314 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 309375 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 309436 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 309497 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 309558 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 309619 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 309680 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 309741 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 309802 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 309863 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 309924 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 309985 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 310046 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 310107 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 310168 29 100.0 0 ............................. | A [310195] ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //