Array 1 1-822 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFWK01000050.1 Basilea psittacipulmonis DSM 24701 contig_82, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1 34 94.4 30 --.................................. TCATAGGCATAATAAGGTTCGAGCTTGCGA 65 36 100.0 29 .................................... CGGTAAGTTTACAAAAGTTTCCCCCCTTC 130 36 100.0 30 .................................... AACAAGCTCAAAGAAATGCATTTTGATTTC 196 36 100.0 30 .................................... AGAAGATATTTGTTTATACAAATTGATAGA 262 36 100.0 30 .................................... TAATCTGTATTTGTGACAAGCACAATTTCT 328 36 100.0 30 .................................... TTCTTTTTTTAGCTCTAGCCAGCCCTTCCC 394 36 100.0 30 .................................... ATTTAGCGTTGCCTGCTTCTAGAGACTCAA 460 36 100.0 30 .................................... CATATCGTCTTATGCCTGTACTTTTTTCTA 526 36 100.0 30 .................................... GAACCGATAAAGAACTTATAGAAACATACG 592 36 100.0 30 .................................... AGGTGGGTTATCTTAGTCGTCCAAGAATTG 658 36 100.0 30 .................................... ACAAATGTTATCTATATGAACCGATAAAGA 724 36 100.0 30 .................................... AGCATTTGGTGTAATACGATAGCGAGTACC 790 33 91.7 0 .................................--- | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 98.9 30 AGAATAGACTCCCTGATTGCAAAGGGATTCGGATAC # Left flank : | # Right flank : | # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGAATAGACTCCCTGATTGCAAAGGGATTCGGATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.00,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 364-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFWK01000010.1 Basilea psittacipulmonis DSM 24701 contig_93, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 363 36 100.0 30 .................................... CTTGCACCCGCCCCACCCTTGCACATAGTG 297 36 100.0 30 .................................... ACTATCTATAATATGGTTATATGTTGTATT 231 36 100.0 30 .................................... TTGCACGTGTAATAGTGATTATCAGGTGTG 165 36 100.0 30 .................................... TGAGCTGGTTGGTAAAGGATTTACGCAAAG 99 36 100.0 30 .................................... CTTATTTACAATGGTCAAGCAAACAATTTG 33 33 91.7 0 .................................--- | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 98.6 30 ATTGTAGCATTACGAGATGAGAGAGGAAACTACAAC # Left flank : TAGCATTACGAGATGAGAGAGGAAACTACAACTTTTTGTGCTTGATTTGGCTAGCGTGTTG # Right flank : C # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTAGCATTACGAGATGAGAGAGGAAACTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 1-294 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFWK01000076.1 Basilea psittacipulmonis DSM 24701 contig_152, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1 30 100.0 36 .............................. TACCCGTTGTTTAAACTTCTTAACCCGTTCTTCAGA 67 30 100.0 36 .............................. TACAAATCATAGGTATGATAAAAGAACCATAATAGA 133 30 100.0 36 .............................. TACCATGTTACAAATTATTAAACTTGTCTTCTAAGA 199 30 100.0 36 .............................. TACTGAACCAACACTCACCTCAATAAACTCATAAGA 265 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 100.0 36 ATAGACTCCCTGATTGCAAAGGGATTCGGA # Left flank : | # Right flank : | # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAGACTCCCTGATTGCAAAGGGATTCGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 1-228 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFWK01000071.1 Basilea psittacipulmonis DSM 24701 contig_156, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1 30 100.0 36 .............................. AATGAAAAAAGTAAAGAACAAACGGTAACGTTGGTT 67 30 100.0 36 .............................. AATAGATGGACAACTTCAGCAAGCGTAACGTGGGTT 133 30 100.0 36 .............................. AATGTAATCCGCCTATTAGATTGAGCAATTCTAGTT 199 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 100.0 36 GTAGTTTCCTCTCTCATCTCGTAATGCTAC # Left flank : | # Right flank : | # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTTTCCTCTCTCATCTCGTAATGCTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 34010-33318 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFWK01000063.1 Basilea psittacipulmonis DSM 24701 contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 34009 34 94.4 30 --.................................. AGGCTTCGTTTCTAAACAGAACGCCGTTTA 33945 36 100.0 30 .................................... CCAAACTGAGGACGGCTTTAAAACTCTAGA 33879 36 100.0 30 .................................... TGGACTGGCGGCAATGAAACCCGCCCTAAA 33813 36 100.0 30 .................................... AATCAGTCGTCGTCTCGTATTGACCGTTAG 33747 36 100.0 30 .................................... TGCTTAAAAGGGTTTTCCTCATATCGATGG 33681 36 100.0 30 .................................... TTTAACCGCTCTTCTTCTTTATAAAGGTCT 33615 36 100.0 29 .................................... TTCGTATCGTTCCACGCTCTATTTTTTTT 33550 36 100.0 30 .................................... CGAATTTATTCCGCTTCTCCCATTTAAGAT 33484 36 100.0 30 .................................... TACTATCTTTGACGGCTTGTGAGTCGCGTC 33418 36 100.0 30 .................................... GGATTAATTCCTAATGTTTTTTCGTGTTTA 33352 35 86.1 0 .............A.............GTA..-... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 98.2 30 ATTGTAGCATTACGAGATGAGAGAGGAAACTACAAC # Left flank : | # Right flank : TGATGATTTGTTTAGTCCTAGAATTTGTTCACAATTAAAAAAAACGACTAGACTGAATCTAATCGGCAATATGAAAAAAGCCACTAGGCTAGTAGTGACTTCTTAATCGATTGTTTCTTCGTTCTCTAAATCTCGGATAACTTCCTCTGCGGTGAGGTCATAGTCTCCGCTGACCCGTTGATAAAAATACAGTGCGTTAGGGTTTGTTTTGAGGTCATGAATTAGTTCCGCAATCTCGGCTTTAGTAGGCAAGTCATCTTCCATTTCTCGCAATCTTGCATTTTCCTCAAGCTCTGCACGCATATCCTCTTGCCATGCTTCTAATGAATCATAGCCACAAAGCTTTGCACACTTTTGTTGTTCATCAATCGGCAAATCTAAAACGCTCATTAATCTACCTCCGTTATTTGAAAAATCAGTTTTTTTGAGTTCCCTTACCTGTGGATGACGTATTATCAGTGTTAGCTATTTTGGCTGTTCTTGATATGATGTTATCTTTT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTAGCATTACGAGATGAGAGAGGAAACTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 3987-3624 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFWK01000058.1 Basilea psittacipulmonis DSM 24701 contig_45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 3986 34 94.4 30 --.................................. CTGAGTAACTATATACTCTGTTGCCCCAAA 3922 36 100.0 30 .................................... AATCGTAGGTAAGATATGGCGGAGCTTGCG 3856 36 100.0 30 .................................... CAATTTTCATATCCTCCCAGTCTATATCTG 3790 36 100.0 30 .................................... TATAGCTTGGATTCTTCGGAGTTTAGGGAT 3724 36 100.0 30 .................................... CCAATATATTAGCGATAGATTCTGACGCAT 3658 35 86.1 0 ...............CC.-..........T.A.... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 96.8 30 AGAATAGACTCCCTGATTGCAAAGGGATTCGGATAC # Left flank : | # Right flank : GTCTGCTACCAATATTACTGGCACATTAACACCCCGCCCCCACCCTGAAAAACCACAAATTTGCATTTCAAACCATTAGGTTTTGGTCAGGTTTAGAATACATTTCATACGTTGAACATAATTAACCGTTTTTAAGTTTTTCAGGAGACAAAAATGCTATTGCAGCTAATTTTTACAATATTTATATCTCCGATTTTTGAAATTATGATTTATGGGCTTCCTCATATTATTCTAGTGTTAATATTGCATTGTTTATTTAAACGGAGTAACTGATGAAAATCGAGCAAAAAGCGGTGGATGGCAAAGATGGAATTAGTCTTCATCTGACTTGGAAAGAGTTGACAGTGGGTGCGGTAGCAACGGTTTCATATGCGATATTTCCCAAGTTAACAACGGTGGTTTTGGGTGCTGCAGCGGTTTATTATGTGGCCGATAAAACGGGAATCTTGGGGAACAAAAAGCCTTGAGAAGCGATAAAAAACGTTTGAATGACACATGGT # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGAATAGACTCCCTGATTGCAAAGGGATTCGGATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.60,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //