Array 1 598-210 **** Predicted by CRISPRDetect 2.4 *** >NZ_FSSB01000059.1 Vibrio spartinae strain CECT 9026T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 597 28 100.0 32 ............................ GGAAAGTAAGGGGGCGTTATGGCCTTGAGTAA 537 28 100.0 32 ............................ CCGATATGATCCAGCTCTGGGCCTTTGGCATA 477 28 100.0 32 ............................ ACTAAGGTGGCCGATTCGCGGCGAACCCTTGA 417 28 100.0 32 ............................ TCTTCGTGACTAAACTCGCGATCATCAATCTG 357 28 100.0 32 ............................ GTTCCGTTATTAGATTTTGTAAATTGAATTGC 297 28 100.0 32 ............................ GATCAGAGGATGCAATCCGTTGATATTGGCTC 237 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TCGATGCTCTCAGGGTGAAAAATCATGGAAGATTTTTCAGGATTGCCTGAGCAGGATGCGAATCAATCCGACCCTGATTACGTGCGCTGAACTCAAAAAGATGCTTTTGGTTACTTTTGACATCTATCAAAAGTAACTGGGGCGCATTCGGAGATGGTAATGAAATCGGCAAAAGTAATCGCGCACCAAATCACTGCACCTCAATTTTTATATCCCCAGCCTTCGGCCCCAAATTTTGACGCACAATCAGCCTAACCATTCTTCCGTGAATGGTTTTCTTATTTCAGCGACTGATTTGAGTTGAGTGAAACATGACAGAAGCGAAGCCAACTTTATCGATGCACTCAGGATGAAATTTAAACCATTTAGACCTTCTTTTTTTGCCCCTAAAAAATAACTAATAAAAACAGTAAGATACAGGAGGGCGATTTTAACAAGGTAAAAAAGGGTTTTTGCCGCTAACCTCTTGCGAGTGCTTATTTTTTCGTGATATGTTCATT # Right flank : ATGCTAAAACGCCACTCACGGCACCGCCTGTTGCGAGTTGAGTGAAACATTGAATCAACAAAGCTCAATTGATCGATGCTCTCAGGGTGAAAAATCATGGAAGATTTTTCAGGATTGCCTGAGCAGGATGCGAATCAATCCGACCCTGATTACGTGCGCTGAACTCAAAAAGATGCTTTTGGTTACTTTTGACATCTATCAAAAGTAACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 13989-13838 **** Predicted by CRISPRDetect 2.4 *** >NZ_FSSB01000001.1 Vibrio spartinae strain CECT 9026T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 13988 29 100.0 32 ............................. AATGTACCCAATAAGCCATTTAGCAACTCACC 13927 29 100.0 32 ............................. CGCTGTCTCGCCTCTTCCGCGACTTGCTTCCA 13866 29 96.6 0 ...........................A. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GTGTTCCCCGTACACACGGGGATGAACCG # Left flank : TGAACCGGAGTCTTACGGTGATGCCGGACACAGGAGTAAATAGTCGTGAGTATGTTGGTTGTTGTCACGGAGGCTGTCCCGCCACGCTTACGTGGCCGATTGGCCGTGTGGTTGTTGGAAGTGCGAGCTGGTGTGTATGTCGGTGATGTTTCTAGAAGAATACGCGAGATGATTTGGGAGCAAGTGATTCAACTTGCTGAAGAGGGCAATGTGGTGATGGCATGGGCCACCAATACTGAATCTGGTTTTGACTTTCAGACGTATGGAGAAAACCGTCGAGAGCCGATTGATTTTGAGGGGTTGAGACTTGTGAAATTCAAGCCGCTAGAAAGTGAGCTATAAGGGCAGACACTAAGTTATAAGGACAGACACTATAGCGTCCAAGTCCTCGATAGTTTTACCATTTTCGGTTGGATCGATGAACGTTAAAACAGACAAAAAATGTTGGTAGATTGTAAATGTAGAAATTTATATTTATAAATCAATTCACTACAACTAGA # Right flank : GGTTATTGAGTTATAAGGACAGACACTTTAAGTCGGTGGGAAAAGAAAGGAGGGTTATCGGGTTACCCCTCCTTTTTTCTGATTATTTGCCTAGTTTGGGTTGAGTAAAGCCACCGTAAACATCGAGACGGCGGTGACGTAAGTTCGTCACGGATCCTTCGGTATTCAGTTGCTTCAATTTATCTAGATCAACATCGGCGAAGATGATCATCTCTGTGTTCGGACTTGCTTCGGTGATTGTTGCATCGTGTGGGAAGAAGATATCGGATGGTGAAAATACCGCAGATTGTGCGTATTGAATATCGACATTGTCCACACGTGGTAAGTTACCAACACTGCCTCCAATTGCGACATAACACTCATTTTCAATGGCTCTTGCTTGTGAACAGAGACGGACGCGTTGATAGCCATTTTTGGTGTCGGTCCAAAACGGCACAAACATGATTTGTACATCCTTTTCTGCCATCATTCGGCCAAGCTCAGGAAACTCACTATCGTAA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACACACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGCCCACGGGGATGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23458-23063 **** Predicted by CRISPRDetect 2.4 *** >NZ_FSSB01000001.1 Vibrio spartinae strain CECT 9026T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23457 29 100.0 32 ............................. AAATTGAAGCCATTCAGTCAGTCATGGATTCG 23396 29 100.0 32 ............................. GCTTATTAGGAACACCTAAATAGGCATCCATA 23335 29 100.0 32 ............................. AGATTATGCACGCGGGTATCGATCATCAATGG 23274 29 100.0 32 ............................. GGACGAGCGTTTACCGCGCTTTTTATAATTTA 23213 29 100.0 32 ............................. CCCATCCAATCCATACCCGATGTAGCAGTTGT 23152 29 100.0 32 ............................. ATATTTCCATCATTAGGTTGATGGTTAGCTCC 23091 29 82.8 0 .......................CGTG.A | ========== ====== ====== ====== ============================= ================================ ================== 7 29 97.5 32 GTGTTCCCCGTATGCACGGGGATGAACCG # Left flank : CCACTCGGGCTCGCTGCTGAAGACTCGGTCAGCATATTTCCAGTGCACTTTGTCTGTGGATGAGTACATGGTGATGCCCGGTCCGGTACTGAATACATAGTAGGTCCCGTTTTCGCGTGCCAGCACTGGGTCATGTACTTCGACTTGTGCAGCATATGTATTCGACAATATTCCCAAGCCAAGTAGTAGTGACATGGACGCCTGGATTATTCTTCTCATGGTGTTCCTTTTGAGTTAGTCATTGGAATCATTAATATTATATGAAGAAAGTTTTATATTTATTGAGGTCCGTCTAGTTATAAGGACAGACACTTTAAGTTGCAGCCTCAGCGGCTTATTTGAACGAAGTGAAACATTGGCAAAACCAAATTTTGAGCGTACCCAACCCACGATAGTTTCTTTATCTCCGGTCTCATCGATTTACCTCGAAACTGGCGAAAAATGTTGGTAGATTGTTAATGCTGAAATTTGTATTTATAAATCAAATGACTACAATTAGA # Right flank : TTAATCAATGTGAGCATTTTGGTATACCCCATCGTTAGTAATGGATTTGTCATTAATTTTGTAAATAAATTTGAGTGCCTTCTTGGTCTGCAACATTTCCCCCGTATAGACGAATCGGTGTGCTAACTTGATGAAACCAAATTTATTTATGGGATTAACATCTCGTGGAAGAACCAGCCTACTTCTTATACTGGGGCAAGGCACATCAAGCACCACAGCATGGTGGTGATGACTATCATCTTCTACCCTATCACAGCCTTGATGTCGCAGCGGTCGGGCAGCAATTCTTACATCCTGAAAAACCATTAACCTGCGAGCTGGCTGCTTTTCTAAATATCACTCCTAGTCAGCTTAATCGTCTGTTTACTTTTGCGCTTGCTCTGCATGATCTAGGCAAATTTTCCTCAGCTTTTCAGGCGTTATATCAGCCTCCGGAGGCTTTGTGGTTACCAAATTGCCGTCGGACATATGATGGCAGCATGTATCGACATGATCGATTA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATGCACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 539-210 **** Predicted by CRISPRDetect 2.4 *** >NZ_FSSB01000026.1 Vibrio spartinae strain CECT 9026T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 538 28 100.0 32 ............................ TGGCGGCTAGAGTTGTTCAAAAAACAAACAGA 478 28 100.0 33 ............................ TCACAGACGTTTTGTAGACGGTAAAACCTTCTT 417 28 100.0 32 ............................ ATCACCAGCTAGGCGCTCATGTAAGTCTCTCT 357 28 100.0 32 ............................ GGTACACAACATATAGGAATTATTACGATGGA 297 28 100.0 32 ............................ ACCCATGTGGAGGATTGGGAGCTGATCACCAC 237 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 6 28 100.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GGGGGCGCTTTCGGAGATGCTATTGAAATCAGCAAAAGTAATCGCGCACCAAATCACCACACCTCAACTTTTATATCCCAGCCTTCGGCTCTCCAGATTTGACGCACAATCTTGTTTTTCGATTTCAGAGGCATGGGTGTTCTGTGCGCCAGTTCATCTTTCAGAGATGAAAGACGAACCAGAAAATCTTTTTTTGTTTGACGGCGTCGCATGTTGTCCAGAACCGTCTTTTACGGGCGTCCTGCCCGGAAAAGCCTAACTATTCATCTGTGAATGGTTTTCTTGGTTGAGTGGTTTGTTTGAATTGAGGGAAACATTTTAAAAAGCCAGTTTGATTGATGCACTCAGGATGAAATTTAAACCATTTAGACCTTCTTTTTTTGCCCCTAAAAAATAACCAATAAAAACAGTAAGATACAGGAGGGCAATTTTAACAAGGTAAAAAAGGGTTTTTGCCGCTAACCTCTTGCGAGTGCTTATTTTTTCGTGATATGTTCATT # Right flank : ATGCTAAAACGCCACTCACGGCACCGCCTGTTGCGAGTTGAGTGAAACATTGAATCAACAAAGCTCAATTGATCGATGCTCTCAGGGTGAAAAATCATGGAAGATTTTTCAGGATTGCCTGAGCAGGATGCGAATCAATCCGACCCTGATTACGTGCGCTGAACTCAAAAAGATGCTTTTGGTTACTTTTGACATCTATCAAAAGTAACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1577-1248 **** Predicted by CRISPRDetect 2.4 *** >NZ_FSSB01000026.1 Vibrio spartinae strain CECT 9026T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1576 28 100.0 32 ............................ ACTGTACGCCGTCCGCGCCCGGGGTCAGTCCC 1516 28 100.0 32 ............................ ATGATGTCCACCGAGGAAAAAGCCAACTTCAT 1456 28 100.0 33 ............................ ATTAGGGTGATGGTTAAATCCACATCTTTTATT 1395 28 100.0 32 ............................ AAACAAACCAGAAGAGGGGATCGGATAATGGC 1335 28 100.0 32 ............................ ATGTCCAGTCGGTTAGTTTACCGTTTATGTAT 1275 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 6 28 100.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TCGATGCTCTCAGGGTGAAAAATCAGGACGATTTTTCAGGATTGCCTGAGCAGGATGCGAATCAATCCGACCCTGATTACGTGCGCTGAACTCAAAAAGATGCTTTTGGTTACTTTTGACATCTATCAAAAGTAACTGGGGCGCATTCGGAGATGGTAATGAAATCGGCAAAAGTAATCGCGCACCAAATCACTGCACCTCAATTTTTATATCCCCAGCCTTCGGCCCCAAATTTTGACGCACAATCAGCCTAACCATTCATCCGTGAATGGTTTTCTTGTTTCAGCGACTGATTTGAGTTGAGTGAAACATGACAGAAGCGAAAGCCAACTTTATCGATGCACTCAGGATGAAATTTAAACCATTTAGACCTTCTTTTTTTGCCCCTAAAAAATAACTAATAAAAACAGTAAGATACAGGAGGGCGGTTTTAACAAGGTAAAAAAGGGTTTTTGCCGCTAACCTCTTGCGAGTGCTTATTTTTTCGTGATATGTTCATT # Right flank : TGCTAAAACGCCACTCACGGCGCCGCCTGTTGCGAGTTGAGTGAAACATTGAATCAACAAAGCTCAATTGATCGATGCTCTCAGGGTGAAAAATCATGGAAGATTTTTCAGGATTGCTTGAGCAGGATGCGAATCAATCCGACCCTGATTACGTGCGCTGAACTCAAAAAGATGCTTTTGGTTACTTTTGACATCTATCAAAAGTAACTGGGGGCGCTTTCGGAGATGCTATTGAAATCAGCAAAAGTAATCGCGCACCAAATCACCACACCTCAACTTTTATATCCCAGCCTTCGGCTCTCCAGATTTGACGCACAATCTTGTTTTTCGATTTCAGAGGCATGGGTGTTCTGTGCGCCAGTTCATCTTTCAGAGATGAAAGACGAACCAGAAAATCTTTTTTTGTTTGACGGCGTCGCATGTTGTCCAGAACCGTCTTTTACGGGCGTCCTGCCCGGAAAAGCCTAACTATTCATCTGTGAATGGTTTTCTTGGTTGAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 2775-2627 **** Predicted by CRISPRDetect 2.4 *** >NZ_FSSB01000026.1 Vibrio spartinae strain CECT 9026T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2774 28 100.0 32 ............................ TTGTTCGGCAGTGGTGACGACGTCGAAGTCTC 2714 28 100.0 32 ............................ GAAATCAGATTCAGATACAGGCCTTCCGGTTT 2654 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CTGGGGCGCATTCGGAGATGGTAATGAAATCGGCAAAAGTAATCGCGCACCAAATCACCACACCTCAACTTTTATATCCCAGCCTTCGGCTCTCCAGATTTGACGCACAATTACGTTCTGCGGTTTCAGGGATATTGGTGCTCTGTGCGCCAGTTACTCTTGCCAAGATGCAAGAGTAACCAGAAAATCTTTTTTGTTTGGCTGAGGTGCGTGTTGTCCAGAACCTGCTTTTACGGGCGTCCTGCCCGGAAAAGCCTAACCATTCTTCCATGAATGGTTTTCTTGGTTGAGTGGTTTGTTTGAATTGAGGGAAACATTTTAAAAAGCCAGTTTGATTGATGCACTCAGGATGAAATTTAAACCATTTAGACCTTCTTTTTTTGCCCCTAAAAAATAATTAATAAAAACAGTAAGATACAGGAGGGCAATTTTAACAAGGTAAAAAAGGGTTTTTGCCGCTAACCTCTTGCGAGTGCTTATTTTTTCGTGATATGTTCATT # Right flank : TGCTAAAACGCCACTCACGGCACCGCCTGTTGCGAGTTGAGTGAAACATTGAATCAACAAAGCTCAATTGATCGATGCTCTCAGGGTGAAAAATCAGGACGATTTTTCAGGATTGCTTGAGCAGGATGCGAATCAATCCGACCCTGATTCGGTGCGTTGAACTCAAACCTTAGGCATTTTGGGGTACTTTTTCTGCCGTGAAAAAGTATCTGGGGCGCTTTCGGAGATGCTATTGAAATCGGCAAAAGTAATCGCGCACCAAATCACTACACCCCAATTTTCAACCTTCCCAGCCTCCGGCCCCAAATTGTGACGCACAATTGAGTTTTTCGGTTTCAGGGATATTGGTGCTCTGTGCGCCAGTTACTCTTGCCAAGATGCAAGAGTAACCAGAAAATCTTTTTTTGTTTAACTGAGTCGAACGTTGTCCAGAACCGCCTTTTACGGGCGTCCTGCCCGGAAAAGCCTAACCATTCTTCCATGAATGGTTTTCTTGGTTG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 481739-481471 **** Predicted by CRISPRDetect 2.4 *** >NZ_FSSB01000007.1 Vibrio spartinae strain CECT 9026T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 481738 28 100.0 32 ............................ AGTAACCCCTGAATTGACGACGTAAGTTTGTG 481678 28 100.0 32 ............................ TATTGAGGTGCTTTCCGCCTCAACCATTGGCT 481618 28 100.0 32 ............................ AGCCACTGTTTTGCGGCCACTTCGGTTAACCA 481558 28 100.0 32 ............................ ATCACAGCATCACGCTTGAAGCCCCCGAAATT 481498 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GATAGCATAAACGCCCTTCGAATGGCATTTCGAGGAAAACCATTTGTATATGATGTTGTCAAACTATTGCTTGATTTTGGTGCTGATCCTGATGCTAAAACAGAAAAGGGAAAATCAGCCCGAGAGCTTGTTAACTTACTCGATGACATGGATCCTAAGATTATTGAATTAGTCAGTCATTACTAAATAGAACCCACTATCAATCAAGCAACATTTCCAGCCTCCGGCCCCCAAATTTTGACGCACAATCCGCTTAATCTTTCTCCCGGAATGGTTTTCTTGGTTGAGTGGTTGATTTGAATTGAGGGAAACATAGTGAAAGCGAAGCTAACTTGATTGGTGGAATTAGGAAAAATTTAAGCATGTTAGACCTTCTTTTTTTGCCCCTAAAAAATAACCAATAAAAACAGCAAGATACAGAAGGGCGATTTTAACAAGGTAAAAAAGGGTTTTTGTAGCTAACATCTTGCTAGTGCTTATTTTTTCGTGATATGTTCATT # Right flank : GGAGTGACACTCAGTTGAGGCTGATGCCACTCCGATTTATTTCAATCAGCCACTGGCTTACTCATCGAGCATGATTTCTTCTTTCCGTAGATTTATTTCATCAAAGGTAATCAGATTATTGAGGTACAAAAGCACCTCTCGCAGTTCATTTTGATCGATACTGGGGTGCGTATTGGTAATAAGACAATCAATCAGATAGCCGCGAGCAGTCAGGTGTAAATCGAGGTTGGTTTTTGACATGGAAAAGCCTCTTCGAGAGTATGGATTGCCCCCACCACGCAAAGGTTCCAATCTTTAGGTGGTGAGCTGAACAAGGTTGGAACAACCGCCTCGAAGTACGGCCAGCATACGCTGCCTTGTCAGCTCACCATAATTTGAGCGAATCAAGGCTACACATAAAAAAACACTGAGACAAGTTCAGCATATTATGTGCTATCGAGTTTTATCGGTGTTCCAATCCCGACACCGTTTTTTTCGGTGCCTGTGCAGCGTAAGTGGCA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 71501-71293 **** Predicted by CRISPRDetect 2.4 *** >NZ_FSSB01000025.1 Vibrio spartinae strain CECT 9026T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 71500 28 100.0 32 ............................ AATACAGTCCAAGCGAGTGAGAATTACCATTG 71440 28 100.0 32 ............................ CGAAAGCCAGCGAATGGTTTTTTTCATTGCCC 71380 28 100.0 32 ............................ ATTCGGCGGCATGAACTGCTCCCAGAACGGAT 71320 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TATCAAAAGTAACTGGGGCGCATTCGGAGATGGTAATGAAATCGGCAAAAGTAATCGCGCACCAAATCACCACACCTCAATTTTCAACCTTCCCAGCCTCCGGCCCCAAATTGTGACGCACAATTACGTTTTGCGGTTTCAGAGGCATTGGTGCTCTGTGCGCCAGTTCATCTTTCAGAGATGAAAGACGAACCAGAAAATCTTTTTTGTTTGATTTGGGAGAACGTTGTCCAGAACCCGCTTTTACGGGCGTCCTGCCCGGAAAAGCCTTTGAATGGTTTTCTTATTTCAGTGGCTGATTTGAATTGGGTGAAACATTCTAAAAGCCAATTTGATCGATGCACTCAGGATGAAATTTAAACCGTTTAGACCTTCTTTTTTTGCCCTTAAAAAATAACCAATAAAAACAATAAGCTACGAATAGGTGATTTTAACAAGGTAAAAAAGGGTTTTTGTCGCTAACCACTTGCTGCCACTTATTTTTTCGTGATATGTTCATT # Right flank : CAGTGTAAATTTCATGTGCGTGTTCTTCTGCCGTTCACTGCCGTATAGTGGGTAAGCAGAACTATTGCTTTGAATTGAATCGCATTTTTCCCAGTAATGTGCGTAAAGTGAGGGTTGGTGGTGTTCTTTGTCAGTCCCTTCTTTTATGCTAGCGCTATTCATCCATAACTAACCCCATATTGTGATTATGAAAACATCTCTCGATCACCTGCCTGAATATAAACAGCAAGAGCTTGCGACGATCTCGACCATTCTGCGTGATACGTTGGAAGACTATCTTGAGGGTAAGACGGGGAGTAAAAGCGAGTTTCGCATCCTGAAAATCATTCTGTTCGGTAGTTATGCCAAAGGCAATTGGGTCAGCGATCCGGTTAATGGTTATATCAGCGATTACGATATTCTGGTAATCGTCAACAAAGCTGCCTTAGTGGAGGATTATGCAGTCTGGCAGCGCGCTGAAGAGCAAATTGACCGCAAAGTGAAATCTGCCCCGCTGGGTT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 87732-88059 **** Predicted by CRISPRDetect 2.4 *** >NZ_FSSB01000014.1 Vibrio spartinae strain CECT 9026T, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 87732 28 100.0 32 ............................ GAGACGCGGTCGAGTGCCGAACTAACGATCCG 87792 28 100.0 32 ............................ AACAGTATTTGCAATCACAGAGGATTAATCAT 87852 28 100.0 32 ............................ AATCTGACGGAAATCCTCTGTCAGGATCAATG 87912 28 100.0 32 ............................ TTTTCGAGAATGCCTGACAGCGACTTATTCAA 87972 28 100.0 32 ............................ CGGCGCGGCGTCCGGTCGTCGTATACCGGTCG 88032 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AAAATTCAGGGATGAATTTTAAGCTATCCCTTAACAAAAAGGCTGAGCAGGAGCGAATAAAAGCGACCCTGATCACGCGCGCTGAAGTCAAACTCAAGGCACTTTTGGGGACTTTTGCTGCTGGGCAAAAGTCTCTGGGGCGCTTTCGGAGATGTGATTGAAATCGAGGAAAGTAATCGCGCACCAAACCGCTGTACCTCAACTTTCAATCTTTCCAGCCTCTGGCTCCAAATTTTGACGCACAATCAGCCTAACCATTCTTCCTTGAATGGTTTTCTTATTTCAGCGACTGATTTGAGTTGAGTGAAACATGACAGAAGCGAAAGCCAACTTTATCGATGCACTCAGGATGAAATTTAAATCATTTAGACCTTCTTTTTTTGCCCCTAAAAAATAACCAATAAAAACAGTAAGATACAGAAGGGCAATTTTAACAAGGTAAAAAAGGGTTTTTGTGGCTAACACCTTGCCAGTGCTTATTTTTTCGTGATATGTTCATT # Right flank : ACGTAAGGAACGGTTATGACGAAAGAGCATACCGTTCACAGCCGCATAGTGGGTAAGCAGAACTATTGCTTTGAATTGAATCGCATTTTTCCCAGTAATATGCGTAACGTGAGGGTTGATGGTGTTCTTTGTCAGCCCCTTCTTTTATGCTAACCTCATTCATCCACAACCAGCCCCATGCCACGATTATGAAAACAACCCTCGACCATCTTCCCGAATATAAACAGCATGAGCTGGCGATAATCTCAACGATTCTGCGTGACACGTTAGATGATTATCTGCAAGGCAAAACGGGCAGTAAAAGTGAGTTTCGTATACTGAAAATCATCCTGTTTGGCAGCCATGTCAAGGGGAATTGGGTCAGTGATCCGGTCAATGGCTATATCAGTGATTACGATATTCTGGTGATCGTCAATAAAGCAGCGTTGGTTGAAGATTATGTGGTCTGGCAGTGTGCCGAAGAGCAAATTGATCGAAAAGTGAAATCGGCCCCATTGGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 108192-108699 **** Predicted by CRISPRDetect 2.4 *** >NZ_FSSB01000014.1 Vibrio spartinae strain CECT 9026T, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 108192 28 100.0 32 ............................ TATCAATGCTTCGCACTCTGATTCACTGATGT 108252 28 100.0 32 ............................ GGATTGGAAACATTCGACACGACCTCCGTAAT 108312 28 100.0 32 ............................ AGAAGCCGCTCGATGATGAAAAACGGCGTTAT 108372 28 100.0 32 ............................ GTTAATCTTAACTTTGCTTCCGTTGGCGACGA 108432 28 100.0 32 ............................ CGCATGAAGCGCCGCCAACCAAAGGCATTCTT 108492 28 100.0 32 ............................ TCTGTGAAGGTTAAGTCGAACACTACCCTATT 108552 28 100.0 32 ............................ AGTTGATTCAGTGTTTCAATACTGTCTACCCC 108612 28 100.0 32 ............................ TTTCTAGATTTGATTGTGCAGATATCTACTGT 108672 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 9 28 100.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GGCGCTTTCGGAGATGCCATTGAAATCGGCAAAAGTAATCGCGCACCAAATCACAGCACCTCAATTTTTATATCCAGCCTCCGGCTCTCCAGATTTGACGCACAATTACGTTCTGCGATTTCAGAGGCATGGGTACTCTGTGCGCCAGTAACTCTTGCCAAGATGCAAGAGTAACCAGAAAATCTTTTTTGTTTGGCTGAGTCGAACGTTGTCCAGAACCCGCTTTTACGGGCGTCCTGCCCGGAAAAGCCTAACCATTCTTCCTTGAATGGTTTTCTTGTTTCAGCGACTGATTTGAGTTGAGTGAAACATGACAGAAGCGAAAGCCAACTTTATCGATGCACTCAGGATGAAATTTAAACCGTTTAGACCTTCTTTTTTTGCCCTTAAAAAAGAACCAATAAAAACAGTAAGATACAGGAGGGCAATTTTAACAAGGTAAAAAAGGGTTTTTGCCGCTAACACCTTGCCAGTGCTTATTTTTTCGTGATATGTTCATT # Right flank : TGCTAAAACGCCACTCACGGCATCGCCTGTTGCGAGTTGAGTGAAACATTGAATCAACAAAGCTCAATTGATCGATGCTCTCAGGGTGAAAAATCATGGAAGATTTTTCAGGATTGCCTGAGCAGGATGCGAATCAATCCGACCCTGATTACGTGCGCTGAACTCAAAAAGATGCTTTTGGTTACTTTTGACATCTATCAAAAGTAACTGGGGCGCATTCGGAGATGGTAATGAAATCGGCAAAAGTAATCGCGCACCAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 173729-173522 **** Predicted by CRISPRDetect 2.4 *** >NZ_FSSB01000030.1 Vibrio spartinae strain CECT 9026T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 173728 28 100.0 32 ............................ TGTGGCAACGAAAGTTCTACATTCTTTAAAGA 173668 28 100.0 32 ............................ ACGATCGCGGTTTCTGGGTTTTCAATGATGTC 173608 28 100.0 31 ............................ GTTTGATGTGTACACGGTGTTGAGCAGTACG 173549 28 96.4 0 ...........................T | ========== ====== ====== ====== ============================ ================================ ================== 4 28 99.1 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CTGGGGCGCTTTCGGAGATGCCATTGAAATCGGCAAAAGTAATCGCGCACCAAATCACAGCACCTCAATTTTTATATCCAGCCTCCGGCTCTCCAGATTTGACGCACAATTACGTTCTGCGATTTCAGAGGCATGGGTACTCTGTGCGCCAGTAACTCTTGCCAAGATGCAAGAGTCACCAGAAAATCTTTTCTGTTTTGGCTTGGTTACGTGTTGTCCAGAACCAGCTTTTACGGGCGTCCTGCCCGGAAAAGCCTAACCATTCTTCCATGAATGGTTTTCTTGGTTGAGGGGCTCATTTGAATTGAGTGAAACATTTTAAAAAGCCAGTTTGATTGATGCACTCAGGATGAAATTTAAACCGTTTAGACCTTCTTTTTTTGCCCTTAAAAAATAACCAATAAAAACAGTAAGATACAGGAGGGCAATTTTAACAAGGTAAAAAAGGGTTTTTGCCGCTAACACCTTGCCAGTGCTTATTTTTTCGTGATATGTTCATT # Right flank : ATTCGGAGTGGCTGCTTAGCTGAGGCTGCACCACTCCGGTTTTTATACTTGGTTCAATCCCACACGCACTTATTCATCAAGCATTATTTCTTCTTTCCTCAGGTTCATTTCATCAAAGGTGATCAGATTGTTGAGAAACAAGAGAATTTCCCGCAGTTCAATTTGGTTGACACTGGGAGCTGTATTGGTCACAAAAAAATCAATCAGATAGCTGCGGGCGGTTAGGTGTAGATTTTGGTTAGGTTGTAGATTTGGCATCATTGCTTTCCCTCTGAGGCGTGATCGATTCACCACTCAAAGGTTCCTAATCTTCGGGTGGTGAGTTGAACAGGGTTAGGAACTACCGCCTCAAAGGATTACGGCCAGCTAACGCTGCCCTGCCCAACACACCATAATTGAGAGGTGAAAGGCTACACATAAAGACTATCTTGTACAAGATGACATTTTAGTGCCTTTGAGAGTTATACGGGGTCCTAATCCCGACACCGGATTTTTCGGTG # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 177063-176855 **** Predicted by CRISPRDetect 2.4 *** >NZ_FSSB01000030.1 Vibrio spartinae strain CECT 9026T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 177062 28 100.0 32 ............................ TCACGGTTATCCGCAGTCGCCCGGCGTGATTC 177002 28 100.0 32 ............................ TATCTCGATGTTTGTTCTCGCGTCCTGCGAAA 176942 28 100.0 32 ............................ ACCACCATCACCAAGGATCATTGCGCCAGCAC 176882 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : ATTTGGTCACAGGACTCAGGGTGAAAAATCAGGACGATTTTTCAGGATTGTTTGAGCAGGAGCGAATCAATCCGACCCGGTCAGCGTCCACGAACTAAACCGTTCTTTTGGGTACTTTTGGAACGCCAAAAGTATCTGGGGCGCTTTCGGAGATGTGATTGAAATCGAGGAAAGTAATCGCGCACCAAATCACTACACCTCAATTTTCAACCTTCCCAGCCTCCGGCACCGAAGTTTACGCACAATCAGCCTAACCATTCTTCCGTGAATGGCTTTCTTATTTCAGCGACTGATTTGAGTTGAGTGAAACATGACAGAAGCGAAAGCCAACTCTATCGATGCACTCAGAATGAAATTTAAACCATTTAGACCTTCTTTTTTTGCCTTTAAAAAATAACCAATAAAAACAGTAAGATACAGAAGGGCGATTTTAACAAGGTAAAAAAGGGTTTTTGCCGCTAACCTCTTGCGAGTGCTTATTTTTTCGTGATATGTTCATT # Right flank : CGTAAGGAACGGTTATGACGAAAGAGCATACCGTTCACAGCCGTATAGTGGGTAAGCAGAACTATTGCTTTGAATTGAATCGCATTTTTCCCAGTAATATGCGTAAAGTGAGGGTTGATGGTGTTCTTTGTCAGCCCCTTCTTTTATGCTAACCTCATTCATCCACAACCAGCTCCATGCCACGACTATGAAAACAACCCTCGACCATCTTCCCGAATATAAACAGCATGAGCTGGCGACAATCTCAACGATTCTGCGTGACACGTTAGATGATTATCTGCAAGGCAAAACGGGCAGTAAAAGTGAGTTTCGTATTCTGAAAATCATCCTGTTTGGCAGCCATGCCAAGGGGAATTGGGTTAAGGATCCGGTCAATGGCTATATCAGTGATTACGATATTCTGGTGATCGTCAATAAAGCAGCGTTGGTTGAAGATTATGTGGTCTGGCAGTGTGCCGAAGAGCAAATTGATCGAAAAGTGAAATCGGCACCATTGGGTT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 180687-180539 **** Predicted by CRISPRDetect 2.4 *** >NZ_FSSB01000030.1 Vibrio spartinae strain CECT 9026T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 180686 28 100.0 32 ............................ CTGAACGTGCATGAGCTGAAATATTCATTGCT 180626 28 100.0 32 ............................ CGCTCGTTCAGACATGAAATCCGGGGCAACAG 180566 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : ATTTTATTTGAATTCAGAGAAACATATACAAAGCCAATAGGATCGATGGACTCAGGGTAAAATTCATGGATGAATTTTTAGCTTTTCGTGAGCAGGAGCGAATAAAAGCGCCCCGGTCAGCGTCCACGAACTAAACCGTTCTTTTGGGTACTTTTGGAACGCCAAAAGTATCTGGGGCGCGTGCATCAGATGTTGCAGAAATTAATAAACTCATTGCGCACCAAATCACTACACCTCAACTTTCAACCTTCCCAGCCTAACCATTCTTCCATGAATGGTTTTCTTTGTTGAGTGGCTGATTTGAATTGAGTGAAACATTCTAAAAGCCAATTTGATTGATGCACTCAGGATGAAATTTAAACCGTTTAGACCTTCTTTTTTTGCCCTTAAAAAATAACCAATAAAAACAGTAAGATACAGGAGGGCAATTTTAACAAGGTAAAAAAGGGTTTTTGCCGCTAACCTCTTGCCAGTGCTTATTTTTTCGTGATATGTTCATT # Right flank : GGCTAAAACGCCACTCACGGCACCGCTTGTTGCGACTGATTTGAATTGAGTGACACATAGCAAAAGCCAATTTGGTCACAGGACTCAGGGTGAAAAATCAGGACGATTTTTTCAATTATCCCCTAACAAAAAATCTTGAGCAGGAGCGAATCAATCCGACCCGGCCAGCGTCCACGAACTAAACCGTTCTTTTGGGTACTTTTGGAACGCCAAAAGTATCTGGGGCGCGTGCATCAGATGTCGCAGAAATTAATAAACTCATTGCGCACCAAATCACTACACCCCAATTTTCAACCTTCCCAGCCTCCGGCCCCAAATTTTGACGCACAATTATGTTCTGCGATTTCAGAGGCATTGGTGCTCTGTGCGCCAGTTACTCTTGCCAAGATGCAAGAGTAACCAGAAAATCTTTTTTGTTTGGCTGAGTTGTGTGTTGTCCAGAACCAGCTTTTACGGGCATCCATGCCCGAAAAAGCCTAACCATTCATCCGTGAATGGTT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //