Array 1 471305-473408 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCVV02000002.1 Salmonella enterica subsp. enterica serovar Senftenberg strain HIY0141 NODE_2_length_493562_cov_42.322223, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 471305 29 100.0 32 ............................. GGCAGTGGCGGCGGCGTTTTTTTTGGGGTATG 471366 29 100.0 32 ............................. CATAACGGTTGTAGGTTCACAATAGCCCGTTG 471427 29 100.0 32 ............................. TATCACACTCTGTTACACCGTTATGCACAGAC 471488 29 100.0 32 ............................. AGTATCACCGGATTTTTCGTGCATATCGTGCA 471549 29 100.0 32 ............................. GAACCGAAATCATTTGTTGCTAATTTTAATTC 471610 29 100.0 32 ............................. TGGCAATTGAGCGATTGAACTCGACAGAACGT 471671 29 96.6 32 ............................T AATCCAGAATGCCGGGAGTTTTACGCATCCAC 471732 29 100.0 32 ............................. CGCGTGCCGTGATGCCGGCGTTAAAGCGGAGT 471793 29 100.0 33 ............................. CAAAATGTGTTGTTATGATGGTAGCCTTCAGAC 471855 29 100.0 32 ............................. GCCTGGTTCTCTGAATCTGCAACGATTATCTG 471916 29 100.0 32 ............................. GAACTACTCAAGGGAGAAACCTTTTATGCCGA 471977 29 100.0 32 ............................. TTATCCAGATCTTTTGGTGTAACCTTTTTGAT 472038 29 100.0 32 ............................. ATCTGAGGCGTAGGTGTTCCACACTGCTTCGC 472099 29 100.0 32 ............................. GCGCTACCCCAAACCCGCAAGGGGTACGGTAT 472160 29 100.0 32 ............................. TCGGCGATTACGCGGTCAACGAAGAGACGATG 472221 29 100.0 32 ............................. CATTGAGTTGGTATACGAAAGGTGCAGATATG 472282 29 100.0 32 ............................. ACAAACAGCCGTGGCGATGTTAGTCGCGAAAC 472343 29 100.0 32 ............................. AAATGGGGGAGGTGCTAGAACTGGATGGCGCA 472404 29 100.0 32 ............................. GATGAATGAAATATTAACTGACGCCCGCATCA 472465 29 100.0 32 ............................. GCCCTTCGATGTTGTAACCTGATGTTGTAATG 472526 29 100.0 32 ............................. CGCATAAAAAACAAAGTGTTATGGCTATACCG 472587 29 100.0 32 ............................. CATGGCGGCGCGGCAGGCGCTCCACAGCTCAT 472648 29 100.0 32 ............................. GTTATAAATTCGGTTAGTGACGTCGTCTTTTA 472709 29 96.6 32 ...........................T. GCATGTTCTGAAGTGAAGCAAATGTTATAAAA 472770 29 100.0 33 ............................. GGAACAGCGCCGCATTTAAAGAGTTCGCCTGGC 472832 29 100.0 32 ............................. ACTCACAAATCTGTTTAAATACCGTTTCCGGG 472893 29 100.0 32 ............................. GGAATTGGAATGCGCAGATCCGATTACCAACG 472954 29 100.0 32 ............................. CGTATCGAACCGAGTGAGCAGAATTTGAGGCC 473015 29 100.0 32 ............................. AGGTAGGGAACCGAACGCCATCACATGAAAGT 473076 29 100.0 32 ............................. CGCGGATCAGGCTAACTCAATCAAATCGCCAG 473137 29 100.0 32 ............................. GTTATGCGCCGAAAATTGAAAGCGAATGGCTC 473198 29 100.0 32 ............................. ACAATAAGTAAAGAGCAATGGAGCGGCATCCA 473259 29 100.0 32 ............................. GTCAACGAGGGATTGAATTGGTGGTGTATTGG 473320 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 473381 28 96.6 0 .......................-..... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCTTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCTGATTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 490282-493525 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCVV02000002.1 Salmonella enterica subsp. enterica serovar Senftenberg strain HIY0141 NODE_2_length_493562_cov_42.322223, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 490282 29 100.0 32 ............................. TATGAGTTTTCAACATCACCAACTAGTCATGT 490343 29 100.0 32 ............................. TGCCTAAAGATTTTGAGCGGACGGGAGCTGGC 490404 29 100.0 32 ............................. CACACTGAGGAAATGTGCTTCAGGCTGGCTTA 490465 29 100.0 32 ............................. CCCACTCGCGGAAACTGATGCTACAGGATATT 490526 29 100.0 32 ............................. CTGCTCGAAATTGTCGCCTATTGGGAAATTAT 490587 29 100.0 32 ............................. GCTAGGAATCCGCAGTGTCAGGATTTGGCTGA 490648 29 100.0 32 ............................. GAACAAAAAAACTAAACATTATTTTATGGTGA 490709 29 100.0 32 ............................. CGATATCAGACTTAGCCGTTCCCATTTCGATT 490770 29 100.0 32 ............................. TCAATGCCTGCAATTCTCGACATGCTGCATAA 490831 29 100.0 32 ............................. GTGATCGGCCTGTCCGGTACCCCTTTCAGTAA 490892 29 100.0 32 ............................. GAGATTCAGTCAGGTCGCCTTGACCCGCGCCA 490953 29 100.0 32 ............................. CTGGGGCGGCAACTCAAAGAGCTGGGGGAAAC 491014 29 100.0 32 ............................. AGTAACCATCCGCACTGATGGCATTAGCTACA 491075 29 100.0 32 ............................. CGAATTTTGCGCGTGATGGGCGCCCATGAGGT 491136 29 100.0 32 ............................. CGGACAGGTCGACAGCAAAAACTACCGGGCAA 491197 29 100.0 32 ............................. GCTGAATGGGTTTATTGCTTGGCAACGCTTTA 491258 29 100.0 32 ............................. TCAACGCCAGGATCGCAATTTTTACCGGATTG 491319 29 96.6 32 ...........................T. GCGCATGATCGTTGTGCGTGGGCGTAGTAAAT 491380 29 100.0 32 ............................. CATCGGGGAAGGGAGCACAGCTTTTTCTGCAA 491441 29 100.0 32 ............................. TGGACGCCGTCTATTCATATGCCGCGCTGGGC 491502 29 100.0 32 ............................. GCGGCAATCGCCGCCATTTGATTAGTAACCGC 491563 29 100.0 32 ............................. CAATGTGACACATTGCGAGAAGCGGGAATTTT 491624 29 100.0 32 ............................. TTCACGTCCGCCATCTGCGACACCTCCACCCA 491685 29 100.0 32 ............................. AGACCGAGACCGAGACCGGGCAGGGCGTAGCG 491746 29 100.0 32 ............................. CCCCGAGAGAAAATACCCGAAAGCGTTGTCGT 491807 29 100.0 32 ............................. GTGCGGTCGAGGTGGCGAGGTTGATAGCAGTA 491868 29 100.0 32 ............................. ATCAATATTAAACTCATGACCATGAGCTGTCG 491929 29 100.0 32 ............................. GGCTGCAGAGATTTGGCTCCCCCCTCCCCTGT 491990 29 100.0 32 ............................. TCAGGGGAGAGGATTTTATAGCTGTTGAAATG 492051 29 100.0 32 ............................. CGGCTGTAATAAAGCCGCCCCGAGTCGCACCA 492112 29 100.0 32 ............................. ATGCCCGAGGGGGTCACGCTAAAAACGCTGAG 492173 29 100.0 32 ............................. GGTCGCACCAGCGGCGCCCGCACTTTATCCGG 492234 29 100.0 32 ............................. AGCTATATGTCTGACCGTGACGGGTCGGTTCG 492295 29 100.0 32 ............................. AGTTTGGCCGTGAGACAACGATGTTCCCGGAC 492356 29 96.6 32 ....C........................ TCAGCATCGTTGTCGATCTGGTCGGCAACCTC 492417 29 100.0 32 ............................. ACCGCAGCGTTCGCCCGCAGGGTAAGGAGTCC 492478 29 100.0 32 ............................. TTTACATTCCTGTCGTTGGGCATGAGGCCAGC 492539 29 100.0 32 ............................. GAATTTAACCATCGTATTTGCAGTTATTGTTT 492600 29 100.0 32 ............................. CTAATGCGAGGGATTCTTTACTAGCTGAAAAA 492661 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 492722 29 100.0 33 ............................. TACCGGGCGGCACCGGTGCAGGCGACAACCAAC 492784 29 100.0 32 ............................. ATGGAAGCCGATCTCTCCAGGCCCGTAGCCCA 492845 29 100.0 32 ............................. AGCGACTCAACATGCCGGTTATCGCTGAACAG 492906 29 96.6 32 ........T.................... GAGTTATAGGCGACTTCGTTCGGTTCGAAAAC 492967 29 100.0 32 ............................. CGTACCCCCGGCATTTTCTGGAACGTGGTCAT 493028 29 100.0 32 ............................. CAAGGCGAGTTCAGGCGGTGGCTTGAATCTCA 493089 26 82.8 13 ...................CA.....--- TGGCCGAGCGTGA Deletion [493112] 493131 29 100.0 32 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACG 493192 29 100.0 32 ............................. GGCAAAAACAGGCGTCTTTTAGGGGGTGGTCG 493253 29 96.6 32 ............................C GGTTTTTCTCTTGTCTTACGTATAAATCCAGA 493314 29 100.0 32 ............................. GCAAATATGTTGATCGGGATTCTGGCCGCACT 493375 29 100.0 32 ............................. TTGATCCGGGCATTTGAATATTGGGCTAAAGA 493436 29 100.0 32 ............................. GGCAAAAACAGGCGTCTTTTAGGGGGTGGTCG 493497 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 54 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATATTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GGTTTTTCTCTTGTCTTACGTATAAATCCAGAGTGTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //