Array 1 17602-16658 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSAE01000079.1 Escherichia coli strain A76 NODE_16_length_90986_cov_85.7774, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17601 29 100.0 32 ............................. AGATTTGCCAAATTACGGACCTGATGCTGGGT 17540 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 17479 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 17418 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 17357 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 17296 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 17235 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 17174 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 17113 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 17052 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 16991 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 16930 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 16869 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 16808 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 16747 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 16686 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACATTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 114579-113147 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSAE01000068.1 Escherichia coli strain A76 NODE_14_length_123667_cov_80.8833, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 114578 29 96.6 32 ............C................ CGGGTAAAGTCTCGGCTGAGCGCGTATTGATG 114517 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 114456 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 114395 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 114334 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 114273 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 114212 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 114151 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 114090 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 114029 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 113968 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 113907 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 113846 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 113785 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 113724 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 113663 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 113602 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 113541 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 113480 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 113419 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 113358 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 113297 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 113236 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 113175 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 98.0 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //