Array 1 85708-87157 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSEX01000014.1 Photorhabdus laumondii subsp. laumondii strain C-IL9 C_IL9_5_scf0014, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 85708 28 100.0 32 ............................ TACTGTTTCGATATGTAATCCAGCGTAGTCAG 85768 28 100.0 32 ............................ GGATGGTTCAACGGGGCGTTATGCCTGGGTTT 85828 28 100.0 32 ............................ AAAACCGGCGCTGCGGCCATATTTGTTGTCAT 85888 28 100.0 32 ............................ AAGAATTGGAGTTTGCACTCTGCCAACTGAAA 85948 28 100.0 32 ............................ TGATCCGGATACGCCGGAACTGGAACCACTAC 86008 28 100.0 32 ............................ TCTAATCGTTCTCAAAATACATATCCATAGTG 86068 28 100.0 32 ............................ TGCATCTGGCCAAATGGATTGCCCGCAAACAC 86128 28 100.0 32 ............................ AAAAGGTGACTGGATAAGTTTTGAGCCTACCG 86188 28 100.0 32 ............................ TCCGGCATAGTTACCTATTACAGTAAAAATCA 86248 28 100.0 32 ............................ CTTGCCTTTCGCGCTCTTGGATCTCCAAGCAA 86308 28 100.0 32 ............................ CTCTGGATGTGACCTTTATCAACGAAGAAGAT 86368 28 100.0 32 ............................ GAAGAGATACGTTATGTAGCATCGGAATTAGA 86428 28 100.0 32 ............................ TTAACCCAGCGTCTCTTCCAAGTCACTTGCTG 86488 28 100.0 32 ............................ ACAATAGTAAAAGGAGAATAATATGAGTGATA 86548 28 100.0 32 ............................ CTAGCATCACGTAAGGATAAAGAATCAGGAGA 86608 28 100.0 14 ............................ CATACCAGAACTAG Deletion [86650] 86650 28 100.0 32 ............................ ATGTGGGTAGTATATCCGCGGAAGCGTTATTT 86710 28 100.0 32 ............................ TCACGTCGGTATCTCACTGGGGACCTCCCGTC 86770 28 100.0 32 ............................ TTTCAGGATTTTACCCATCAGGCGGGGATTCA 86830 28 100.0 32 ............................ CTCAAGAAGTTTACCGGTTTCTTACCGTCTGC 86890 28 100.0 32 ............................ ATAACAAAATGCCGCATTCGATGCCATTTAGC 86950 28 100.0 32 ............................ TTTCATTTCATTGCTGATAGTGCCGCCCTTGG 87010 28 100.0 32 ............................ AGACAGATTAGAAGTGTATGTGACAGAAGGAA 87070 28 100.0 32 ............................ TGAGTAAGCTTCAATGAGTTGACTTATTTGAC 87130 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 25 28 100.0 31 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGTTATTTGGGATATTCGCTTGGTGAAAAGTGGCAGGGAAAAGGGATGATGTACGAAGCTTTACAACCAGCTATCCGTTATATGCAACGCCAACAGGGGATGCATCGGATTATGGCTAATTATATGCCAGATAATCATCGTAGTGGGAAGTTGTTGGAACGATTGGGTTTTGAACGTGAAGGCTATGCTAAGAAATACCTGATGATTAATGGAGTTTGGCAAGATCACGTATTAACCGCGTTGACAGATGAAAAATGGAGTGGAAAAAGTTGATTATTACGCTGTACTGTCACCAAATAAAGTAAAGCAAATTGGTAATGATGAATTAAATCACTGTTGAAAGTCAGCCTTCTCCACCCCTTATTTTTGACCCTTTTTTGAGGGTGGATTTTAATCTATTGATTTTTAATGGAATATTATTTCTCTTGTAAAAAAGGGTTTTTTCATTGTTTTATCAATATATGCTTTAATTGTCAGTAGGTTGAAGTTAATATGTAACA # Right flank : ATGAGTAAGCTTCAATGAATTGATTTATTTGACGCACTGACTTCGGTTGGTGCGTTTTTCGAAGTGGCTATTTGGGCTTTCTGTAGTAAGGCTAGTTGCAAGGTACCATCATTTAGGCCAAATACAATGTTACATTGGCAAATTATAAAAGTTAATGATTTCTAGTGTATGAGAATGAATTTATGCATACTCGCCGATTTTGTTAACAAAGTGAATGATTAACCATGGTAGATTCATATAATAAGTGCAATATCGTTCCTCTTAAAATCAACATGTCCGTATTACTTTAAATTATTAAATGGACATTTTGTTATTGATTATCATGAAAATAATTTGAATGGTTTCTTTAATTCGTATAAATAGGTATTATTCTGATTAGTATATTTAATAAATATTGAAGTTCTTTTTTATAATGATTTGATAAATCATAACTTTTATTTCATATTCACTGGATAATGTTGGTTTAATTAAAAACAGATAAATAAAGAGTGATTGAAAAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3374-3642 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSEX01000056.1 Photorhabdus laumondii subsp. laumondii strain C-IL9 C_IL9_5_scf0056, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3374 28 100.0 32 ............................ ATACAACTAACATAGCGAGATAATCATGACAG 3434 28 100.0 33 ............................ ACGCATCAACTGGCCGAAAAAGTCAGTTCCCAG 3495 28 100.0 32 ............................ ATAGTGTAGATGGGCCATGCCTGCGTCCATGT 3555 28 100.0 32 ............................ ACCTTTTAGTTATGAGGGTGTGCGTTTTTATT 3615 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 5 28 99.3 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TATTGATAGCGGCCGTGGAATTTTAACTCATCAAGGGGATGCCATTAGAAATATTGTAGGTTCATTTCCTGGGGCAATAGCACTTCATTTTGAGCTGGCAGCAAAAGGGGTTTTTTACGGTAACGCAACTTTTGGCGTGGCTACAGATGGTAATCCTAAATCAGTAGATCATTTTACCCGGGATGCTGTATACACTACATACGGTTTTGGGTTCGACACGTCAAGGGTTGTTCCTGTAGCTTCGGAGAACCGTCCTCGCAACATCGCCTTTAATTACATAGTAAGAGCGGCGTAATGGCTGAACAAAAATACGCTTGATAGCCGGAAATAGAAAGAGAGACGGCTTTCTACTTGGATGGAAAAAATTTTGACCCTTTTTTAACGGTAAATTTTAATCTGTTGATTTTTCGGTAAATATTGTTTATCCCACAAAAAAGGGTTTTTTATTTTTTATAATGGTTGCTCTTTAACATTCAATAGGTTGGGGTTAATATGTAACA # Right flank : AACCAACATTTTCACTTACCAATCTATTTTCAGAACTGTCGGCTCAAGTGTATCGTTGAGAACAATGAATGTGTGTTTTATGAAGATAGAGAGCCTATGACATTCCAGAACACCGTCGCTTAGATATTCGTGTCCAAATGCCAGAAGATTCATCTTGGAATTTAAAATAGCAGGCGTTACAGGAAGAGATAGAAGGAATAAGAGCAGAATAGTTTTCAGATGTTAAATATAAATGGTTTGGGTATGTTTTCGATTCTAAAATATTTAATTACTTATTACTGCTAATTATATAAAAATAGTCAATCTCCTAATAAATAGGAATGCTGTATTACTCTTCTTTCTGAACTAGACTTTGATTTTAATGAATTACAGACGGATTATTTTTACAGTAATTAAATATGTTGATTATAAAAAATATTATTTTGCTTAAGGAGTAAGGATATGAGTCAAAAAAATGATTTTAAAGCTTTTTCTATTAGCGATAATGCTAATGTAATTAG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 162263-163610 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSEX01000001.1 Photorhabdus laumondii subsp. laumondii strain C-IL9 C_IL9_5_scf0001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 162263 28 100.0 32 ............................ ACAAGTAACTATTTTCGTTACCGTAACCTTCT 162323 28 100.0 32 ............................ ATCAAGTAGTGCTTACAAAGGAGAAGAATGTA 162383 28 100.0 32 ............................ CGCATACCAAGCATCGAATCCCCGTTTAGATA 162443 28 100.0 32 ............................ TAAACGATAACCCCATGCTTCTAATGATTGAG 162503 28 100.0 32 ............................ TTTCCGCTGTACGTTGTACTGCACTATTTAAT 162563 28 100.0 32 ............................ ATCAAAGCACAGCAACGAACAGGCAAGGAAAG 162623 28 92.9 32 CC.......................... TGATACGTCCACAGGTAGCTATTTTCGTTACC 162683 28 100.0 32 ............................ AAGGGAGTGGACCAAAGGGTAAACCTCAGTTA 162743 28 100.0 32 ............................ AATCAAACTCCAGTCAGTATCGCTATCCGTAC 162803 28 100.0 32 ............................ GTAAACAAACGAAGTATCGGTCTGCCGCTCTT 162863 28 100.0 32 ............................ AGACGTGCTCCTTGGGTCCTCTCATTAAGTGT 162923 28 100.0 32 ............................ TGCATCCATCAACATTAAGCCCGTTGACGATT 162983 28 100.0 32 ............................ TTACATAGGCGGCGAGTTCTGCACTGATAGAA 163043 28 100.0 32 ............................ GAGATGAATGACATTGCGCTTCAATGGCAAAC 163103 28 100.0 32 ............................ TAACACATCAGCAAGCTGTTGCTGTGGCAAGT 163163 28 100.0 32 ............................ ACACGTCAGTTCGATAATAAAATCCAGGTCAT 163223 28 100.0 32 ............................ AAAATGAGAGTAAGACGATTAGATAGCGATCA 163283 28 100.0 32 ............................ AATGAAATTAATCGTTTCTCTTACAATATTTC 163343 28 100.0 32 ............................ TACTATGTTGGGATATGCTGCATTATCTAGAA 163403 28 100.0 32 ............................ TCTTGGCCCACATGCGCCACAACGTGGGATGG 163463 28 100.0 32 ............................ AGTATGCACCTTGCGGAAAGCGACAAAGTGGT 163523 28 100.0 32 ............................ AAATCCCCGGTCGCTATCAGTAATTGCATCAG 163583 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 23 28 99.5 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAGGAAGCAGGTCTGGATGTTGTGATGGATCGCTGCCCAAAAATTGAAATTCCAAGATTGGGACTCGAAAAATAATATTTTTCAGCTTGTAGTTATTTGGTTTCTAATTAGTGGATGAAGGGACCCTGGCACCAATATCTAATGTAAACTTAAGGCGTTGGATGAGAAGCGGTGTCCGGGTTCCAAGTGTTCAAAATAATGTTTGAGTTGGATATTGAGTTTACTTTTCTAGACATCTTATAAAATCTATTTTTACAGTTATTACAATATCTTAAGGAAAATTTAGTTGCTCTTATTGCTGCTAAATTTTGCCAGAATCTACACTTTTATTGCTATAAGATATGGTGCTTTTGTTGTGCCCTAGTTTTGACCCTTTTTTATCATCAAAAAACAACCTATTAATTTAAAAGAAAAATAAAACATCTCCTGAAAAAAGGGTTTTTTAATTTTTTATCACTATATTCTTTAACAGTCAGCAACTTAAGGTTAATATGTAACA # Right flank : GCGCGATAACTGCCTTAGGTTGTTAGGTATAATATTGGAGGTTAATTGCGCAGTCTTGGGGCCAGTAGTTGATGGCGGATGGATTCTGCTAGCTCATCGAGAGAAGGTTGCTCTGGATGTTCATCGGATGTTTCATAGGCTAATTGTGCTTCGGCCAGATAAGTATGTACAGGTTGACCATTGTCATCTTCCATCACAACGTGATACCAGGGGGCGGAACGCAGGGTAGCATTGGATGCAATGTCATCCTCTTGGGGTTGTTCCAGCGAGTATTCCACATCAATATCCACGATGACTCCCAAATAACCCAGAAGTTTGTGACGTACTTGTTGGCCGATACCGAATTTGCTGGCGATAATCATAGTCACCTCCAAAGAAGTCTTGTATTGACATTGATATAAGGGCAGTAAGGTGAATTACAAGAGCTGTACCCGGTAGTTGAAGCCATTTTTTGTTTTAAATTGCAAATGTGGCTTCATCTATTTTCAGGTTAGCTGTAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 167479-167626 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSEX01000001.1 Photorhabdus laumondii subsp. laumondii strain C-IL9 C_IL9_5_scf0001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 167479 28 100.0 32 ............................ AACAACAAAACCAACATGTCCTCCACCAATAT 167539 28 100.0 32 ............................ AAGCATCCCGATCACTTCGGTAATATGAATGA 167599 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 3 28 98.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAATCATTTTTTATCTGTAATGTTTATATTTGCTCTCATAATAACATGTAATATAGATTATATCTTTAATTAAGCTAATTATATTTCTGAAAATATGAATTGGATACTTGTTAAATTGGGTAATACTGAATTTTTCAATATTTAAGTACATGGTGAAATTAATGAAACTGTTGGAATATTGGATGATGTCACTATTGAAAGGGGCTGTGAGATTAAGAGGTACTGATTTTTGTCGATGACCGAATTCAGTGAATGGTTCCAGTATCATTGAACATTTTACAGGCAACAATTCTCACTTACTGCATAGATCTTAGGCTTAGAACAGATGACTTAAGTATGTGATGGTATTTTTGCTGCTACCTTATTTTTACCCTTTTTTTGAAGGGAGTTGTAATTTATTGATTTTATGGATAAATTAATTATCTCTTATAAAAAGGGTTTTTCACTTTTTAGTAGTTATGCTATTTAAAAATCAGCAGGTTAAAGTTAATATGTAACA # Right flank : GCGGCAATGGCTGGAGAAGATGAACAGGAGTTTCGCCAACGCTGTATTAGTGGATTTCAAAAAGCTGATGCTTTAGACACCATGATTGAGGCACTACAAACAACTGCGCAACAATTGAGTCAGGTGGCACGATGAATATTCTCTTAGTTTCCCAGTGTAATAAACGAGCGCTAACAGAAACCCGCCGAATTTTGGATCAATTTGCTGAACGTAAAGGTGATAGAACTTGGCAAACGGCTATCACCCAGGAAGGTTTAAATACTTTGCGTAAGTTATTGCGTAAAACGGCACGTCGTAATACGGCGGTGGCTTGCCATTGGATAAAAAGTGGTGGTCAAACTGAGCTGTTATGGATAGTCGGGAATTTGCGGCGCTTTAACTCACGAGGAGTTGTACCTACAAATACAACACAACGTGATGTGCTGAAAAGTCAGGATGAAAATCATTGGCATAGTGTAGAGGCTATCAGCTTATTGGCAGCGATTGCCGGGTTATTTCAT # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 176123-177771 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSEX01000001.1 Photorhabdus laumondii subsp. laumondii strain C-IL9 C_IL9_5_scf0001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 176123 28 100.0 32 ............................ GTCTGTTACTTATGAACAATCAAAATATCTTT 176183 28 100.0 32 ............................ GATGATAAGCTATATCTTGTAGCGTTTAATGC 176243 28 100.0 32 ............................ TGCTTGGGATACGACGTCTTTTAAAGTCGATT 176303 28 100.0 32 ............................ TTTACCGTTCAGATAAGTGACGGCTGGATTGA 176363 28 100.0 32 ............................ AGCATTAAAGCCATCATATTCCAGTTCGAAAC 176423 28 100.0 32 ............................ TGTTGCTATCCATGATAACATTAAGATTAACA 176483 28 100.0 32 ............................ TGAATCCGAATTAACAGATTCCGACGCTATTG 176543 28 100.0 32 ............................ ACCTACATCCATCGGTATCCGGAGGGGTAATC 176603 28 100.0 32 ............................ CATGCCGAGTTGTGGATTGATGATAGTCAAAT 176663 28 100.0 33 ............................ AGTTTGAAACCATCACTACGAGAATTATTAAGT 176724 28 100.0 32 ............................ AGCGGCTACAATGTCTATGCTATTCAGTGGGT 176784 28 100.0 32 ............................ TGGGCTGAATTTATTAAACCTGACGCGCCGGA 176844 28 100.0 32 ............................ GATAAGTGACCGAAAACAGGCTTTACATCAGT 176904 28 100.0 32 ............................ TTGTTGCATCGTATGGTGATGAACAAGTTTTA 176964 28 100.0 32 ............................ GGTGAAGAAGATAACAAGTCGTATTACGAAAC 177024 28 100.0 32 ............................ AGCATGTAAGCGAAAAGGAAAATACCGATGTG 177084 28 100.0 32 ............................ TTCTCACCTTTTCGCCGCACATAGCGGCCACC 177144 28 100.0 32 ............................ TTTTCGCTTACATGCTGGACACTCTCCTGCAT 177204 28 100.0 32 ............................ TTATGGACAGGCATTATTAGCTTTATTGCAAA 177264 28 100.0 32 ............................ TGATAGAGCTTATTCGACAGCTATAGCAAATA 177324 28 100.0 32 ............................ TGACCTCTACGAAAACCTTTCAAGGCATTTCT 177384 28 100.0 32 ............................ TAACGGAGGACTATTACCCCACAGGGGCATAG 177444 28 100.0 32 ............................ TACGGCGAACGTATACAGATTGTGCGGCCACC 177504 28 100.0 32 ............................ ATGATTAATCCATCGACTGCGGGTAAATCAAA 177564 28 100.0 32 ............................ ACTACATGCTTCTTACTGACGTATATAGGTGC 177624 28 100.0 32 ............................ AAAATGCTGGGCTGCTTCTGACAGGGATAGAC 177684 28 100.0 32 ............................ ACTCCACATCCGGCGCTTGATTCACATCTACA 177744 28 78.6 0 ...........T.........AGC.C.C | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.2 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCATTGAATGATTTGCAGTCTTTATCTTGGTTAAAAGGACTCCGGGATTATGCTGAGGTGATTGATATCAAGCTGGTACCTAAGGATGCTCGATATCGTCGTGTTAGCCGAGTGCAGGTAAAAAGCAATGTTGATAGGATTCGCCGTCGTTCGATTAAAAAAGGATGGTTAACGGAGGAACAAGCCTTGCAACGCATTCCTATCAGCAAGGAACAACGCACTCATTTACCGTTTCTGTACCTTAAGAGCTTGTCATCAGGACAAAGTTTTCTGTTGTTTGTCAAACAAGGGCCAATACAAGACAAACCGACGTCAGGAGTTTTTAACTCGTATGGATTAAGTTCATCAGCTACCATCCCTTGGTTTTGACCCTTTTTTAGCGGCTAATTATAACTTATTGATTTATTTAAGGGATTAGCCGCTGCTAATAAAAAGGGTTTTTCTGCTTTTTATCATTATGTTCTTTAATAATCAGTAAATTAAAGGTAGTATCTAACA # Right flank : CTTGATTGAGTGCGCTAAAAAAGCAACCTTTTTTCTTCTCGATATGCATCAATTGTTGTGCTTTTGTGCATATTCTTCACTATTAACCCATTGGTGGTCTTTTTCCCAGGTAAATAGCCATTTACGAGTTGGTCCGGCCATTACGTTGAGATAATAGTTGTCGTAACCGGCAATGGTTGCCACTGGGTGGTAGCCTTTGGGCACCATTACCACATCTTTATTGTGAACAGCCATTGATTCATCCAGTGAACGGTCATCGGTATAGACACGTTGCATGCAGAACCCTTGAGAAGGGTTCAGGCGATGGTAATAGGTTTCTTCCAAATAGGTTTCCTGTGGTGCATTGTCGGTATCGTGTTTATGGCTAGGGTAGGAGCTGGTGCAGCCTTCATCGGTAAAGACTTCAACCACCAACAAGCTATCAGCAGGTTTATTATCCGGTAGGATGTTGTGAACATAGCGTCGGTTGTAACCATTGCCACGTTGTTCTGCATCAATAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //