Array 1 247-13 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFEHM010000252.1 Lacticaseibacillus paracasei strain 2306 NODE_255_length_295_cov_0.940476, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 246 36 100.0 30 .................................... AAATCATCAAGCGAGGGGTTATTTATATGC 180 36 100.0 30 .................................... CACAAACGTAGCCACTGCCGAACGTATCGC 114 36 100.0 30 .................................... GGGTCACACTTACACCGAGTATCATGATGT 48 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : AACCAATCAGTTCAAGAGCTCTTCTCATAGGCACTCGCGATAATTGTG # Right flank : CATCTATATGGAC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [13.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 24215-20976 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFEHM010000006.1 Lacticaseibacillus paracasei strain 2306 NODE_6_length_154505_cov_32.062179, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 24214 36 100.0 30 .................................... GGGTGACGCTGACAAAATCAAGGCGGCTGT 24148 36 100.0 30 .................................... TCCAGCCCGTGAAGTCGCCCGATAAATTCT 24082 36 100.0 30 .................................... CCTAGTGGGTTTTCTAACTTGAATGCCTAG 24016 36 100.0 30 .................................... TGCAGAATTTAACGCCTACGTTAAATCACT 23950 36 100.0 30 .................................... GGCCAAGGGGGAAATGAAAGCCAGCATTAT 23884 36 100.0 30 .................................... CACCTTTGTAACGCTCGCCGCTAGGCGTCC 23818 36 100.0 30 .................................... TGCAAACCGGCCGTGGCCGGTGAAGCCATT 23752 36 100.0 30 .................................... GCGAGGTCAACGACAGCCTCCGCAGCAGTT 23686 36 100.0 30 .................................... CATTAGGCGTAAAATGGATTGCTGAAACGG 23620 36 100.0 30 .................................... AAATCATCAAGCGAGGGGTTATTTATATGC 23554 36 100.0 30 .................................... CACAAAGGTTGCAACTGCAAAACGTATCAC 23488 36 100.0 30 .................................... GGGTCACACTTACACCGAGTTTCATGATGT 23422 36 100.0 30 .................................... AACCACTCGCGTTTTTTCGCCGTTTCCATA 23356 36 100.0 30 .................................... CCTTGCAAGTCTTTTCAGATGGCGCCTATG 23290 36 100.0 30 .................................... CAACAAAGTTGTATGGTGAAGGCGTTCACA 23224 36 100.0 30 .................................... ATGGTTGCATTAAACTGGAGGTGTTTCACG 23158 36 100.0 30 .................................... AATTATGGAAACTAATGTGAAGCATACAAC 23092 36 100.0 30 .................................... AGTCGGCAGCGGCAGCAAAGTCATTGATTG 23026 36 100.0 30 .................................... GGTTGACGCGCTGAAACAATCATGTTATAC 22960 36 100.0 30 .................................... GACCACAATACATTGTTATGCCATAGTAAG 22894 36 100.0 30 .................................... AAAGAGAAGCGTTCGCGAGATTTTGGTAAC 22828 36 100.0 30 .................................... TTTTTCCGGCGCGGCGCGTTGCCTTATGGC 22762 36 100.0 30 .................................... TCTTCTCATAGGCACTCGCGATAATTGTGT 22696 36 100.0 30 .................................... GGCAGCAAACCCGGTACCATGATCCAGTGC 22630 36 100.0 30 .................................... GGCAGCAAACCCGGTACCATGATCCAGTGC 22564 36 100.0 30 .................................... ATCTATATGGACTGAACGGAGCACCTTTCA 22498 36 100.0 30 .................................... TGGCGAAGAGCAATATCGTGCATTTCAGCG 22432 36 100.0 30 .................................... CATGGTTGACGTAAACAAGCAGCAAGCGGC 22366 36 97.2 30 ...................C................ TCTTCTCATAGGCACTCGCGATAATTGTGT 22300 36 100.0 30 .................................... GCTGAAGTATCTTGGCAGGAGGCATGGCTA 22234 36 100.0 30 .................................... AGGGGATTTAATTGGGCATGTGGTCACTCG 22168 36 97.2 30 ..............................G..... TGATTCGGTGAAAGTAGGTGCTCGCCTTGT 22102 36 100.0 30 .................................... AAGGACGGGCAGAGTTAGGAAAGAAGCCAT 22036 36 100.0 30 .................................... CAGACGAGCTCGGGATCAGCTACAATGCCT 21970 36 100.0 30 .................................... ACGGGGGTGTACATGCCGACTCTGATGCTA 21904 36 100.0 30 .................................... GTGGATCTTGCCGCGAAGTACCCGCGTTCG 21838 36 97.2 30 .............A...................... CGCACACGACAAAGAAACCTCCTAGGATAA 21772 36 100.0 30 .................................... GAATATCAGGCAACGTGATCGTGCCTTTCT 21706 36 100.0 30 .................................... TCTTCCATCCTTGGCAGCTTGGCCGCTATC 21640 36 100.0 30 .................................... TGGCTGTTATACGTTTATCGAAAAGGGTGA 21574 36 100.0 30 .................................... CTTCCGTGCCTTTTCGCTTCCCGGCAATAC 21508 36 97.2 30 ........................G........... TTGCCGTCAATACTGTTCGCCCACGCGGTG 21442 36 100.0 30 .................................... ATAAAAACAATGGCGATTATCAAACTTGAT 21376 36 100.0 30 .................................... AGATGGCCGTTGTAAATGACGACATCACAG 21310 36 100.0 30 .................................... CAGAATACTACATTGGCGAGCGTGAGGACG 21244 36 97.2 30 ..........................A......... ATTTGAGTAACCAGACTCAGATGTGCTTAT 21178 36 100.0 30 .................................... CCAAGGGCAGGTTTTCAACTGCCTTCTGGA 21112 36 97.2 0 ...................C................ - Deletion [21077] 21076 35 75.0 30 -CAAA.....AT....A.G................. AGGAAATTCGAGTTCTTCCCGCAATTGATG 21011 36 86.1 0 C............................G..TTC. | ========== ====== ====== ====== ==================================== ============================== ================== 50 36 98.9 29 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAAGATGGGGTTGTTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCGATTGATTTACTCCAAGATCCATTCTTGAGCGACTTGCCAGTCACGGTTGAACCAGGCGGAAAGCTCGATCAAATCATGAAATACTGCAACGTTCATTTTGATGAGGCTGTCACGTCAGAGTCAACCTCGAAGATTGAGGCGCTTATTCAAACGTTAACTAAACTAGGGGAAAAGAAACTTGTCATTCTTACAAATGTCAGTCATTATTTAAGTGCCAGAGATTTCTTTGCGGTGACTGAACAGATCGGCGATACAGAACTTCAGGTTGGTCTCATTGAGTTCTCAAAAGTGAACCGAAAGAAGTACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTTGTTGATAGTCGCGAACTAGATTGATTAGGAGATTGTGTGAAAACACCG # Right flank : AAGCAGCAGTGATACTAAATTGAAGCTAAACTTGTCAAAAAGTGCCTCATCTTTTTGACAAAATAAGGTGTTTTACTATTTATTGTGTGAATCAAGCCCCGATATTTACAAAGCCGAATCTTTCAGCGGCCAACCTAAAAGCCGCTGTCTAAAGCAATATCGTAGTAACCACACACTCTCAAGCGGTGATATATCAATCAAAAACTAAGTGCTATCGACCTCCTCTTGTGATAGAATTCATTATATATGAAATCGCTTACACAACGAGGAGGAAGAACGACATGAAAAAACTAATAGTGCTCAGTGCCACACTTTTGGTCAGCATGGGGTTGGCCGCATGTAGTAGTGGATCGAGCTCTAGTTCGAGCAAGAGCAGCAGCACGACTAGCCAGACGAGCAACGCGAAGGTCAAGATTAATACCGGCGCTGATGCGAGTGCCAAGGTGCCGGCAGCCGGTACCTTAGTGATGCGTCAGCTTTATGCTGCACCGCACGGCAAG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //