Array 1 8489-8957 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADAMU010000003.1 Staphylococcus argenteus strain DSM 28299 contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 8489 36 100.0 36 .................................... TCTACTAAAAAGTTATATGTTTCAACAATTTCGTCA 8561 36 100.0 37 .................................... TGGTTTAAGTTTGTCATTATAATCAATCCTTTTTCTT 8634 36 100.0 37 .................................... TGATTAAAACGGTTTGCTTTATTTGCATTTAAAATAG 8707 36 100.0 34 .................................... GTTTTTCATAGTTAATCAATCCCTTTTCTTTTTT 8777 36 100.0 36 .................................... TTAAATCTTTGATTGCTCTTAGCTCTAGTTATGTAT 8849 36 100.0 38 .................................... CACGCTGTAGTGAAGTATAGAAACGGCATGAGTACAAT 8923 35 91.7 0 ..............................-...GT | ========== ====== ====== ====== ==================================== ====================================== ================== 7 36 98.8 36 GATCGATAACTACCCCGAAGAATAGGGGACGAGAAC # Left flank : CCCCAACTGTTACTAATAAAGTATCAAAAATTTCCAATGAATATTTATTATATTTTGGTATATTTATATAATCATTAGAAACAAATTTTAAATTATTCCTCTCAATTAAGCAGCTAGTTTTAGATATATTTAAAGTTCTTAAGACTGATAATTTACTACTGTAAATATATTCACTAGATTTAAACGCGTATCCTGTTCTAATATCAGCTATATTTTTTAATGAATTAATATTCCAATTTAAAGGTATTTCACCTAACTCACTATCAATCATTTCTCCACCATTAGATTTATAAGGAAGAGAAAGTTAAATTTATATTAAGTTTTATATATGATTAATTATTAACGTATTAAATGTAGTATACTCTTAATATAAGTAAAATCATCATAATATTTGTCAAAAAAGTGACATCTCATATAGTAGCGCGGTGTTAGTTGTCACAATTTTTGACAGCCAAAATAATACTTGAACCCTTGTGGTTATGCTATCTATTAAAGTATCT # Right flank : TGTAAATTTAATTACACTCTAAAATTCGTGAATTTTTAATGGAATACGCATGGATTAATTTTTAGGGGATGGAAAATGAAAGATGTTATTTATGTAGAAAACCATTACTTTGTTACCGTGAAAGAAAATAGTATTAAATTTAGAAATGTAATAGATAAAAGTGAGAAATTTTATTTGTTTGAAGAAATAGAAGCGATTATTTTTGATCATTATAAAAGCTATTTTTCTCATAAGTTAGTAATTAAATGTATTGAAAATGATATCGCTATTATTTTTTGTGATAAAAAGCACTCTCCATTAACGCAACTTATTTCTTCTTACGGTATGACTCATCGTCTTCAAAGGATTCAAAGTCAGTTTCAATTATCTGGGAGAACTAGAGATAGAATTTGGAAAAAGATTGTTGTAAATAAAATTATTAATCAATCAAAATGTTTAGAAAACAATTTACATAATGAGAATGTGAAGTTATTAGTAAACTTAGCAAAAGATGTTAGTTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGATAACTACCCCGAAGAATAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: F [matched GATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : III-A [Matched known repeat from this family], // Array 2 17679-18003 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADAMU010000003.1 Staphylococcus argenteus strain DSM 28299 contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 17679 36 100.0 35 .................................... TTTTACTGTGTTTTTCATAATTAATCAATCCTTTA 17750 36 100.0 36 .................................... TGCCCACTTAATTAATTCATCTAGTCTCATTTCTTT 17822 36 97.2 38 ..........................A......... CATCAACTGACTTTTTAACTGTTTTAGTGAATTCGTCT 17896 36 97.2 36 ......................A............. TTAAAGATCTCAACAATAGCGTCCCATATTTTCTGT 17968 36 86.1 0 .........A.......G....C.....G...A... | ========== ====== ====== ====== ==================================== ====================================== ================== 5 36 96.1 36 ATTCGATAACTACCCCGAAGAAGAGGGGACGAGAAC # Left flank : TAAGAATTAATATACAGACACCTATGTCTTTTAAATATCAGAGTAGTTACATGATTTTTCCTGAGGTTAAACGTTTCTTTAGAAGTATTATGATACAATTTGATGCTTTTTTTGAAGAATATAAAATGTACGATAAAGAAACATTAGATTTTTTAGAAAAGAATATCAATATTGTTGACTATAAATTGAAAAGCACACGGTTTAACTTAGAAAAAGTTAAAATTCCTTCATTTACAGGAGAAATAGTGTTTAAAATTAAAGGACCATTACCTTTTCTACAATTAACTCATTTTTTATTGAAGTTTGGTGAATTTTCTGGATCAGGTATGAAAACAAGCTTAGGCATGGGGAAATATAGTATAATATAACTAGAATATAGCTGAAATTTAATTGTCAAAAAATGTGACATTCTGCACTTATAGTACAAGTGATTTGTCACTATTTTTGACAGCAAATTTTATATTTGAACTATTGATTTAATAGGCTTTAAAGAGCTATCT # Right flank : CCTCATCTTGATGATCCCAATTGGCCTGGTTAAAAAGAAATCGATAACCTTTCGTAGAATAGAGAATAAGTATTAAAAATATATTTGGTTTGATAAAATATTCTGCAAAAAAGGGGACAAAAAAATCAAGATTTAAACTGTAATTCATTATCTTTGAAATTAATTGACATTCAATTTCTAAATAAGCAGAGACAAAAATAACTTTCATACAAATAATTTCTTTGTGATTAAGTTGGAATTAGAAAACTAATACTAAACGAATGGAATGTATATTATTGAGGAATTGGATGCAGTGTGGTGCAATTTCGAGAACTACTACTTAAGAAAATAAACAATAAGAATTAAATCTGAGTCAAGATATAAAAACAAATATTTTTACCATAACTATATTAGTAAATACTTTATTATTTAGTATACGGATGAAAGCGAAGTGACAGCTAGCAATGCTCCAGATATAGGTATTAGTATTATAAAAGAGCAAGATTACCATTTAGAAAATG # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGATAACTACCCCGAAGAAGAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [14,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : III-A [Matched known repeat from this family], // Array 1 84016-84220 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADAMU010000011.1 Staphylococcus argenteus strain DSM 28299 contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ===================================== ================== 84016 27 100.0 30 ........................... TGCGCTTAGCGCAGGCGCTCCTACTTTTCA 84073 27 100.0 37 ........................... GTTGATGCGCAGCATCCAACTGTGTTCCTCTTATTCT 84137 27 96.3 30 .............A............. TGCGTTTAGCGCAGGCGCTCCTACTTTTCA 84194 27 92.6 0 ............T...........A.. | ========== ====== ====== ====== =========================== ===================================== ================== 4 27 97.2 33 ACTTTAGTTGTTAGGGGCTCTTATGCA # Left flank : CAACTAACTATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTATCAAATTTTTCATTGGAATTCTCTTATTAAACTTAATTACTATTTTATTTAAAGTACCTGTTGGTTACTTGATTACATTAAATACGCAATCACTCTCTCAAAATGTTGCAGAAAATATCATAAAAGTTTATACAGTACTAACAATCATTTTATTTGTTGTTATTCATGCAATCATTTTAATGGGTATCGTGCAATATTACTTAAAACGTGGTCAAAAAATTACTAAACATAAAGTAAAATCAGCTGACAAAAACAAAAATGTCGTGACTGAACCAAAAAGTACAAAAGTAGAAAATGAAAAAGTGACAACATCTGTTGAAACAAAAACAGAAAAAGCACAAGATTCATTAAAAGATGAGACTACAAAAACGATTACTTCAGATAAACCAGAAGACAATCAACCAAAATAAAATTTAGAGCCCCTTACA # Right flank : AGTTGATGCGCAGCATCCAACTGTGTTCCTCTTATTCTACTTTAGCTGGTTAGGAACTCCTTTCTAAAATAACTAAGTGCATTGTCTATACATAGTTGGGTAAATTCTATTAGAATAAATATTGTTAAACAGCGACCTCATTAATTAAACGAGAAACTTTAGTAACTGATTAGGAGTAACCACTATAACCATAGGCATCACCACTTTATTAAGAAATTAGCCATCATCTATTCAAATTGCCCTATAAATATTTGAACATGAACATGTTTAAATATTTATAGTATAAGGTTTTTCATTTCGTTAACAACTCGATAAACAAGGGATAGAATGGTTGTCAGACACTGAATTACGGAATTATTTATTTGTTACAGATGATAAAGATAAAAAAATAGTACAAACATGATAAAATTGTGCATGTCTAAACAATCAAAAATGTACATTATTAAATTATCATTGCCATTCAACTAAGTGTAGACGATTCAAATAGTGTTGGTTTTACA # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTTTAGTTGTTAGGGGCTCTTATGCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.26%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //