Array 1 2188-29 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACZDY010000009.1 Bifidobacterium dentium strain VB29 Contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 2187 33 100.0 35 ................................. GGCAACCGGCACAAGGTCGCACCACCCGAAACCAC 2119 33 100.0 34 ................................. GAAGTGTCGAATCTCTTGCGCGAGGGATACCGGT 2052 33 100.0 33 ................................. TACAAGCACAGAGGCTCGATCACGCCTAACCCG 1986 33 100.0 33 ................................. TCGTTGAATTCGACTCCAAGGCTCCTGCACATT 1920 33 100.0 34 ................................. CGTCTGACCGCCCGGCCAATAGGCCAGCACAGCC 1853 33 100.0 34 ................................. CGACAAGGCACGACTACGATTGCTACCGGCAAGT 1786 33 100.0 34 ................................. AAGCTCGGTCGCTTCGATGAAGCCAAGGGCGACC 1719 33 100.0 34 ................................. AAGGCGGTGCCCAGTGCGGCCGCGTTGGAGGGGG 1652 33 100.0 34 ................................. ATCGACACCAGCACGCGCGACGGCAAGATCAAAC 1585 33 100.0 33 ................................. AACAATCGGATGAACCAGATCAATACCATCGGT 1519 33 100.0 33 ................................. ATGGCCGTCAACAACGGATCGGCTCTCGCATTG 1453 33 100.0 33 ................................. TATTATTGTGCGGTCTTGACGTAATTATTGCCG 1387 33 100.0 34 ................................. CGACAAGGCACGACTACGATTACTCCCGGCAAGC 1320 33 100.0 33 ................................. ATCTTGGCACGCCTGTCCTGTTGGATACGAGGA 1254 33 100.0 34 ................................. CATCGCGGTGCCGCCGACAAGCACGTAATGCAAG 1187 33 100.0 35 ................................. GTCAACCGTCGCATATCCAGCCGCTTCCAACGCGG 1119 33 100.0 33 ................................. GCGGTAGCCGCATTGCTTACGGCAGTATTGGCA 1053 33 100.0 33 ................................. TCGATCAGGACAAGGCGGAAGAAATCTACTCTC 987 33 100.0 34 ................................. TACCGGTTGTGCCGCGCCGCAAAAACATTGACCC 920 33 100.0 33 ................................. TACGAAAGCCTGATGCCGACCACGGAAGAATGA 854 33 100.0 33 ................................. CGCAAGATGTACTCGACGCCACCAAGGAGACGG 788 33 100.0 32 ................................. GTCCAATCGGCCGCGCAGGTCGGCCTGCGCCT 723 33 100.0 35 ................................. CATTGTGCGCTGATGATGTGCCGATGCACGGATGG 655 33 100.0 32 ................................. AGTACGCTTGCCCTCGCAATTGAGATACAAGC 590 33 90.9 33 TC.........T..................... GGATTGACATAGCCGCTGAACACCTGACCACCA 524 33 100.0 32 ................................. TCGTGCGCGATAAGAAGAAGTTCGCGGTCATC 459 33 100.0 33 ................................. AGACTGGACTCAACCGTGGTGGCCTTGGATAGT 393 33 100.0 33 ................................. ATCTTGGTACGCCTGTCCTGTTGGATACGAGGA 327 33 100.0 34 ................................. CCGTCGCGTACGCCATCCTCGATGACGATGGAAA 260 33 100.0 33 ................................. GTCGTGGTGGGAAAGAGACGGTAATTGCCTTCC 194 33 100.0 34 ................................. TCACCATCCTTATCACGATAGGTATCGTTGAACG 127 33 100.0 33 ................................. ATGCGCGAGAGTAAACTTCTGCCGTTCCTGTGA 61 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 33 33 99.7 33 GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT # Left flank : CTGCGGGGAAGAGACGGTTGCGTAACGTTGCGAAGACATGTATGAAATATGGGCAACGGGTGCAGAATAGCGTATTCGAGTGCTCGGTCACTTCATCGGATTATCTAACTTTAGTAAATGAAGTGATGAAAATCATGGATCAAGAAAAGGATAGCCTGCGCTTATATAAATTAGGGACAAAATATTCTGAGAAGATTGAACATTATGGTGTACAGCGGCATCTTCCTGTAGATGATGTGATGATGATTTAGACGCCGAGGCCTGTCGTTGTGCGAAGTGGAAGCTCTCATCGAATAAGGCAAGCTTCGCACCTGGATGGAACTTGGAATCGAAAAGTAAGTCGATTTTCCTTGGCTGTTTGATAATTTCAGAGAGAAGAATCGTTATTATTTTTTGGTAGAGTGATTAGAATAACGGGTTTTGACTTCAAACCCTGCTACTCTTGAACTTGTACGAAGGATAGATGTTCCACAATGTGAAACATGCTGTCCATCTGTGCA # Right flank : TCTCATCGACGCCAAATAGCGACGACGGC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.10,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 149806-147643 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACZDY010000008.1 Bifidobacterium dentium strain VB29 Contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 149805 33 100.0 33 ................................. CTCATCGACGCCAAATAGCGACGACGGCACTGC 149739 33 100.0 33 ................................. ATGCGCGAGAGTAAACTTCTGCCGTTCCTGTGA 149673 33 100.0 33 ................................. CTCATCGACGCCAAATAGCGACGACGGCACTGC 149607 33 100.0 33 ................................. TTGACTACATGATTTGTCATGTAGTGCGGTTGT 149541 33 100.0 33 ................................. TGAGGATGGAATCAGCCGGAAGCAATCTCATGG 149475 33 100.0 33 ................................. GAGTCCGGCGTCTGATACCAGCCGTCAAGCCCG 149409 33 100.0 35 ................................. ACCCCACCATTTGGTCACGTTCCCCGGAGCGCCAC 149341 33 100.0 34 ................................. AAACCAGCTCCGGCCAACTGGCTACGAGTCATGC 149274 33 100.0 35 ................................. AGGTTGCCCCACATCGATCCGAGCACCGACTGGTT 149206 33 100.0 33 ................................. CATTCGATGCCGATAGGTTTGCCCATGTCCGCC 149140 33 100.0 33 ................................. TTCTGCGCGGAAACATAAAGCTGGTTAAAATAA 149074 33 100.0 33 ................................. TTCTGCGCGGAAACATAAAGCTGGTTAAAATAA 149008 33 100.0 33 ................................. GCTACCGATCTCACGCAATGCATAGTGCGCCAC 148942 33 100.0 33 ................................. CTTGATGCCGTATCGTTTCGCGGCGAACGTCTT 148876 33 100.0 34 ................................. GGTCTGTGATATCCATTGCGATAAGGTAATAGCC 148809 33 100.0 34 ................................. GTAGAAATGCCGTTGACCGTGGTCTCCAACGTGG 148742 33 100.0 35 ................................. CATGAAACAATTGAATGCCAGAATTTTACAAGCCG 148674 33 100.0 32 ................................. ACCCGCTCCGGCCAACTGGCTACGAGTCATGC 148609 33 100.0 34 ................................. GATGGAATCGCTCATGTTGAAGATCGGCGAGGGT 148542 33 100.0 34 ................................. TGCGTGGACGCGGAACGCAAGGCCTTAAGACCAA 148475 33 100.0 36 ................................. TATCAATAGCTGATGCCGCTCAACGGTTCGTTGTCG 148406 33 100.0 33 ................................. CACGCTCGTGGACCTGACCCCTTCGGGCGCGGA 148340 33 100.0 35 ................................. TCACGGAGGCGGAAAATAACCTAACTGATGCGAAA 148272 33 100.0 33 ................................. AATTTGGCGAGCTTGTCCTTGACAGCGGTTTCG 148206 33 100.0 33 ................................. GGTTACTCCACGCGGTGATGATCGCACCGACGA 148140 33 100.0 33 ................................. CCTTCGCGACGTTGAGCCGCTCCAATTACATTT 148074 33 100.0 34 ................................. ATCTTACTTCATGCTTGGAATCGGGGTTGTTGAT 148007 33 100.0 34 ................................. TTCGAGTTGACGAACGTCTGTGCGTTGGTGCCGT 147940 33 100.0 33 ................................. TGATGCATGCGGTTGAGGTGCATGGTCTGCCGG 147874 33 100.0 34 ................................. AAGGCATTAGCGAGTTGCATCGCGAAAGCTCGGT 147807 33 100.0 33 ................................. GTCAACTCCAACATTCTGCCGTCCATGGCCATG 147741 33 100.0 34 ................................. TGGTAGAGGTGGATGATCTTGCCCTTGAGATTGG 147674 32 84.8 0 ....................T.A.-...A...C | ========== ====== ====== ====== ================================= ==================================== ================== 33 33 99.5 34 GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT # Left flank : CGAGAGTAAACTTCTGCCGTTCCTGTG # Right flank : ATGATGGGAGCGGCCATGGGATTGCGTGAACGGCGTGAGCGTTGCGGGTTGACGTTGCTCCAGTTGGATGCGTTGACCGGTATCGCCTACACGCGGTTGAGCACGTTGGAGTGCAATGCGTCCGAGGCTCGCAACATGTATTTGGGTACGGCTCGGCGGATTGCCGACGCGTTGCATTGCAACGTGTTGGACTTGTATCCGGATGGGGATGCGTGGCGTGGCGGCGTGTCCGCCGGCGTGACCGGGTTGAGGAGGATTCGTCGGGAACGGCATTTGACGCAGCGGATGCTGTCAGCCTTGACGGGTATCCCCCAGCCTAATATTTCTTGGTTCGAGACCGGGTATTGTCCTGTGTCTCAAATGTATTTGGATACTGCGCGACGCCTGTCGGAGGCGTTGCAATGTGACCCTGTTGATTTTCTAATTGATTGAAAGGATATTGTGATGAAGGCTGAGGTTGTTATTTTTACGAGGTTGGAGCGTCATGGCGGGACGATTCT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.10,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 67506-67682 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACZDY010000003.1 Bifidobacterium dentium strain VB29 Contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =========================== ================== 67506 24 100.0 27 ........................ GTAAAACAGTCGAAACCACGTTGCGAA 67557 24 95.8 27 .............T.......... AACAGGGTGGCGAATCCGAGGCACGGA 67608 24 91.7 27 ..G.T................... GTCAGGACGTCAAAACCGGGGCGCAGT 67659 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== =========================== ================== 4 24 96.9 27 TGTCCGATTCTGGAGAATCGGACA # Left flank : GCAGACGCCCGCCGGCTTGATGCGTCCGAAAGCCCCGCGCGCAGGTTCGCGCATTCTATTGGAGCGGATTACGCCGATTTGGAGTCGTTTGGGATTCCTAAGCAAGGTTACTGCGCGCAATATCTTCCGTTTCAAGTCGCGCCTGGTCATGACGGTCGGAGGCGTTGCCGGATGCACGGCGTTGATCATATGCGGGCTTGCGATCAACGACACCGTGGCGGAACTTGGCGTCAAACAGTATCGCGATATCTACCGATACGATGTGATGGTCGTTGCGAACGATACCGATGCGGATGCAATGCGGGCGAAGTTGCGAGCGGACGGGCGTACGACTTCGACCATGGACATACGTGTCGAATCCGGTGATCTGGCGAACGATGAGGGAAGCGAGGGCATCCAACTTGTGGTGGTGCCCGAGGAGCATCTGGATGAACTGGGCGAGATGGTTACGCTCAAGCCGGTCGCATCCGGATGGGATGGTGTGCGCAAGTTCTTCGGAC # Right flank : AAACGCGGCTCGAAGGCGGTGTTGGGCGACAGTGGGGTGATCGTGTCGCAGTCGGCGGCCAACGCTCTGGGCGTTAAGGCCGGCGATACGGTGAATCTCACCAACGGCGATGGCATTCAGGCCAAGGCCAAGGTGAGCGAGGTGACGCGTAACCTCATAGGTTCCGACATCTACGTGAGTGAATCGTATTATGGCAAGCTGTTCGGTTCAGGGTCCGGAATGTCCGATTCTCCAGAATCGGACAAATCGGATTCCGGCGGCTCCCTGACCTGGAACGCCGTATACGCCAAGCTCACCGGATCTGACGATGCGCAGATCGCATACGCCAACACCCTCGAAAAGGATGATTCGGTGATGAAGACGGTGTGCTGCGCGGACATGGCCGCCAGCTTCAAATTTGACCTCATGGGCGCGGTGGTCGCCTTGATCGTTGCGCTTGCGGGCGGTCTGGCGCTTGTAGTGCTGTTCACGCTTGCCAATACGAATGTGTCGGAACGCGT # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.15, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTCCGATTCTGGAGAATCGGACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.00,-3.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 2 127231-127054 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACZDY010000003.1 Bifidobacterium dentium strain VB29 Contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =========================== ================== 127230 24 100.0 27 ........................ CTCGGAGGCACATGCAGGCATCCTACA 127179 24 95.8 27 ...................A.... AACAGATACGCTCCGCTTCCCCACAGT 127128 24 100.0 27 ........................ TGCAAGGGCGTGTGCGGGTACCTTATG 127077 24 91.7 0 ...........GG........... | ========== ====== ====== ====== ======================== =========================== ================== 4 24 96.9 27 TGTCCGATTCTCCAGAATCGGACA # Left flank : ACTGTTCGCTGGCCTCGGCGCCGACGTCAGCAAGTAGCAGGGTGTCTTCGACATCCTCCCAATCGGACTCGGAAAGATGGTCCTTGGCGAGGATGTTGAACAATACCTTGCCAAAAGGATTGCCTGACTTGGCCAGCTTGGCCTTGAGACGCTGAATGCGCGAGCCCGTGGACTCCGGGGTTTCCACCGCCGGCGCGGCCTTCGCCTCTTCCGTCGAGGCGATCGGAGGGACTTCGGCCGCTACTTCCTGGGCTTCTTGGACTTCCTCGGCTTCCTGGGCCGTCTCAGCTTTCTGGACTTCTTGGGCAAGACGCTTATCAGCCTTGGCCTTGGCATCCTCAACGGACTTGTCTACGGCTTTCTTGCGCGACTTGCCGAACCACCAACCACCAAGCAGCAACAGCGCTGCAATCACAACAATGGCGACAATCGCGATAATCACATTGGTATCCATAATCCCAGCCTAAAAACCGCAACGGACACATCGCCCCATCCTCACC # Right flank : CTCGGAGGAGCTCATCCACGGGGCGTGAAAAACTGGACAGCATGGCCAGTACATCCAGGATGACGTCATTTCAAAGACGTGAGCAGCTCATCGAAATCGGTCGGTCACTGTTCGCGTCGAAGGGGTTCGAAGCGGTAAGCGTAGAGGAGATCGCCGCGACCGCGAAGGTATCGAAGCCTATCGTCTATGAACATTTCGGCGGCAAGGAAGGCCTGTACGCCGTAGTGGTGGACCGTGAGATGCGCGCACTCACCGACACACTCGTCAACGCGCTGTCCGACCAACAGGCGCACCCTCGTCAAATCGTGGAACGTGCCGCACTGGCCCTGCTCACCTATGTGGAGGAAAACGCCAAAGGATTTCGCGTGCTCACCCGAGATTCGCCGAAAACCGATCCGGCCGGATCGTTCAGCTCACTGCTCGGCGATATCAGCATTCGCGTGGAAGACCTGCTCACCGAATCGTTCAAACGCCAGCACCTGCCCGCCAAGGGCGTGCCA # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.15, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTCCGATTCTCCAGAATCGGACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.00,-3.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //