Array 1 2440700-2440550 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP005286.1 Corynebacterium humireducens NBRC 106098 = DSM 45392 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2440699 28 100.0 33 ............................ CCAGTGCACGTTCGAAGGCTCTGGTCTGGCCGG 2440638 28 100.0 33 ............................ CCCGGGGGCGGATGTCGGGCAGGCTCCGGACCC 2440577 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 34 GTGCTCCCCGCGTCAGCGGGGATGAGCC # Left flank : GCTGGGTGTATCTGTGTGCTATCCGCGATGGGCACTCTCGTCGGGTCATTGGGCATTCGATGGGACCGAGGCAGGACACCGATCTGGTGCTCACAGCGTTGAACAACGCGCGAGCCACCCGTGGCAGCCTCCCGGAGCAGGTGATCTTGCACGCTGACCGCGGTGCCCAGTTCACCAGCTGGCAGCTGGATGAGGCCGCCCGTGAAGTCGGTGTGCGGATGTCGATGGGTCAGACCGGGGTGTGCTGGGATAATGCGATGGCCGAGTCGTTCTGGGCGACGTTGAAGGTCGAGTATTTCTACCGGCATGCCTTCGCCACCAGGGTGGAGGTTTACGACGGTGTCAGTGAGTGGATCGAGGTCTTCTACAACCGCTACCGCCGGCATTCCGCCATCGGCTTTCTGAGTCCGGTGGCCTATGAATTATCGCTTGATCAGCCAGCTGCGGCGCTGGTAGCCGCTTAACTATTTGTCCACGATTTGCGGGCAAGCCCACACTGC # Right flank : TGAGCTTATCCGCAGGGCAACCGGTGGCGTTTTGTACTGCGGGGATGAAGCCCCGCCGGCTTCCGCTTAACTCGCGGCCCAGATACTCCCGGTATCAGAGGCTGGCCGACAAAACCTCAGCCTTCCAAGCTGAAGACACATCCGACTTCCGGCATCTCCGAAGAACTACCGGTTCCAGGATCGCCCCGGGCATCAGTACCCCGGAACGCACGTGTCCCCGGCACCTCCAGTGGAGGGTCCGGGGACACGTGCCTCGGAGTCAGGTGGTTAATGCTGGGCGAATTACATCGCCGACATGATCCAGATGACTAGGGCGATGATGGCCAGGATGCCGACGATGGTCCAGATGAGTCCGCTACCGCGCATGATGTTTCTCCTTAAGAATTGTCAGTTGTACTTTCCACTCTTGAGAGTAACAGTGATCACATTAGTGGGTATGAATTTGGACGGTTGCTGATCGGTAACAATTCGCCTACCGGACCGTTACCGCAGTTAGATCG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTCAGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTCAGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2445290-2442024 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP005286.1 Corynebacterium humireducens NBRC 106098 = DSM 45392 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 2445289 28 100.0 33 ............................ CTCGAGGATGTCGCCCTCGCACTCCTCGCACAC 2445228 28 100.0 34 ............................ AGCGGCGGCGGACCGGGTGGATTCCGGGGCGCTG 2445166 28 100.0 33 ............................ GCGCACCCGCCGCGGCCTGCTCATCCACAAGGC 2445105 28 100.0 33 ............................ GAAGTCCACCATTTATGAGTGGATCGAGGCCGG 2445044 28 100.0 33 ............................ CGCGCCACCTCAGTCCAACCCCGCGAAAACTGG 2444983 28 100.0 33 ............................ GTGTCAGGCTATCGAAGTGTCTGAAACTAGCGG 2444922 28 100.0 33 ............................ TCACCCGACGTGACACCCTGCTCCGTGACCTCA 2444861 28 100.0 33 ............................ GGCGTCGTCGATATACCCCTCGGGGTCGAGGAA 2444800 28 100.0 33 ............................ CTGGTAGGCCGGCAGCGGATCATGCTTCCGGCG 2444739 28 100.0 33 ............................ CGTCAGCAGATCCCCCTTCAGGTGGCCGACCGG 2444678 28 100.0 33 ............................ CCTGCTGGCCGGCATCGACGTCGACAGCCACGA 2444617 28 100.0 33 ............................ GCTGCGGGATCGTTGGCGGCCGGCCATGTCCCG 2444556 28 100.0 33 ............................ CCCGGCACCTGCCGGACCCTCTGACCAAGCCGC 2444495 28 100.0 33 ............................ CACCGTCCCCAGGCTGGTTGATGGTGTCATGTC 2444434 28 100.0 33 ............................ GGTGGTTGCGCTGCGTGTTGTTGCGCGTGGCTA 2444373 28 100.0 33 ............................ CAGCCTTCGACTTCACAGCCGGGCGCGCGTAGA 2444312 28 100.0 33 ............................ GACGGCGATGGAGCCGGAGTATGTCCTCAACCC 2444251 28 100.0 33 ............................ CCCCTATGGGGTGTGTGACGAGCACACCCCGGC 2444190 28 100.0 35 ............................ ATAATCCCGAGGCGACGCCCCGCCGACGACTCCAG 2444127 28 100.0 33 ............................ CCATCCACGAGCGCTATATCAGCGGGGTCCGCG 2444066 28 100.0 33 ............................ GCCGCTTCTCCTCCGCCGCCGCCCGCCGACGCT 2444005 28 100.0 33 ............................ GCTCTGTCGCGCTATCGGAGACGGACTGGAAAA 2443944 28 100.0 33 ............................ CAGTATCACACTGTTACTACCGATTGAAAGTCG 2443883 28 100.0 33 ............................ CTGGCCCTGGCGACGCTCAGCACGCTTCACAAG 2443822 28 100.0 33 ............................ CTACGGCCTCGTAGTCAATCTCTGCGGGGGTTG 2443761 28 100.0 33 ............................ CAGGACCCGGCGGTGAGTCGTGCGCATCGTCCG 2443700 28 100.0 33 ............................ CTCGGAGGCTCTGATGCAGCTGGACGCGGAGGC 2443639 28 100.0 34 ............................ GTCGGCGTGAGCCTGTGTCAGCGTTTGCACCATG 2443577 28 100.0 33 ............................ CCGAGCCAACACCCGCCCCGTCATCGACATCCT 2443516 28 100.0 33 ............................ CGATCTGAGCGGCGTCCTGCTGCAGCCACAGCA 2443455 28 100.0 33 ............................ CGTCGCAACAGCGTGGTCGTTGTAGGGCTGGAT 2443394 28 100.0 33 ............................ CGCAGACGTACCCTCCCGGACTTCCCGGTTAGT 2443333 28 100.0 33 ............................ AACTTCGTCCACGTTTTTCACGGACTGCTTGAT 2443272 28 100.0 33 ............................ CCCTCGATGGTGAGGGTGCCGTTGGCGTCGGCT 2443211 28 100.0 33 ............................ CGCGGGAGTGGGGGCATCCTCCCCATGTACCAA 2443150 28 100.0 33 ............................ GCGAGCGACCGAGGTCCAGCGCCGCCTCGGACG 2443089 28 100.0 33 ............................ GTCCGCGGGGGCGGTCAGCTTGATCTCCTTGCC 2443028 28 100.0 33 ............................ GCGGTCTTTGTATACGCCATTATTTCCCCTCAT 2442967 28 100.0 33 ............................ TTGTAGGCATATCAGTACTCCTTAATTACTCGG 2442906 28 100.0 33 ............................ CTCCGGCCTCAGCTCCGGGTACTGCTCCCACAG 2442845 28 100.0 33 ............................ GCGGTGGCGAGGTTGTCGGGGGTGCTGGGACCG 2442784 28 100.0 33 ............................ GTGGGGGGCCGGGAACGCGCAATACCTGCGCGA 2442723 28 100.0 33 ............................ GGAGCCGCCGGAGAAGCGTGGCCGCTGGGTCGC 2442662 28 100.0 33 ............................ GGGATGCGGCTGCGGTGGCAATCGCGGTCGGCC 2442601 28 100.0 33 ............................ CACCTACGACTCGGAAAGTCCTACCGCATCCGC 2442540 28 100.0 34 ............................ CAATCAAAAAGGAATCCGGGGGGATTACCGACGT 2442478 28 100.0 33 ............................ GGCGAGTAGGCCTTCGGCGTTGTCGATTTCCAC 2442417 28 100.0 33 ............................ CCAGGCCCCTCGGGTGCCTCATGGAACACATGC 2442356 28 100.0 33 ............................ CGCCCCCGGCGTCTCGCGCTCATTCCCGAAACG 2442295 28 100.0 33 ............................ GATGGCGGCGGTCGCGACTGGCTTCACAGTGGC 2442234 28 100.0 33 ............................ CCGGGGCAGGCATCGGCCCGGGAACGGCATCCA 2442173 28 100.0 33 ............................ GCCCCTCGCCGCTGTTGTTGGCGGTGCGGCTGC 2442112 28 100.0 33 ............................ GGCGCTGGAGGAGCTCGACGCGGCGCGGGAGAA 2442051 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ =================================== ================== 54 28 100.0 33 GTGCTCCCCGCGTCAGCGGGGATGAGCC # Left flank : TGACCAGGCGTAAAACCCGGACCGGGAGACGTCCAGCACGCGTGCCATCATGGTGACCGGGTAGTTCGCCTTCTCTTGCGCCATTAGCTCGAACCGTTCCGGTGCTGTTGCTTGGCGGCGAAGAAGGCGCTGGCTTTTCCCAGGAACTCGTTTTCTGCCTTCAGGTCAGCGACTTCCTTACGTAGCCGGGCGATTTCGGCTGCCGTTTCCTCCGGTGACGGCTGTCCGGTGTCGGTGGAGGTGCGCCGGATGCGTTCTTTTTTGACCCAGCTACCGAGCAGTTGTTCGCCGAGGTCGAGCTGCTGGGCGACCGCCCGGATCGTTTGTCCGGTATCGAGGACCAGGCTCGCGGCGTCGCGGCGGTACTCCTCGGTGTATCGGCGTCGTTGTCCCATGTGAACATCCTTCCGCAGGGCACGGTGGCCCCGCTAGTTTAGGTGTCCACGACAAGAGGGTAACCCCAAGCCCACTTGAAGCAGCTCGCAATAAGGGGTTCTCAG # Right flank : CAGGTGCACTCGGACGAGTCCACCGGCCACTGGGGTTACCCTCTTGTCGTGGACACCTAAACTAGCGGGGCCACCGTGCCCTGCGGAAGGATGTTCACATGGGACAACGACGCCGATACACCGAGGAGTACCGCCGCGACGCCGCGAGCCTGGTCCTCGATACCGGACAAACGATCCGGGCGGTCGCCCAGCAGCTCGACCTCGGCGAACAACTGCTCGGTAGCTGGGTCAAAAAAGAACGCATCCGGCGCACCTCCACCGACACCGGACAGCCGTCACCGGAGGAAACGGCAGCCGAAATCGCCCGGCTACGTAAGGAAGTCGCTGACCTGAAGGCAGAAAACGAGTTCCTGGGAAAAGCCAGCGCCTTCTTCGCCGCCAAGCAACAGCACCGGAACGGTTCGAGCTAATGGCGCAAGAGAAGGCGAACTACCCGGTCACCATGATGGCACGCGTGCTGGACGTCTCCCGGTCCGGGTTTTACGCCTGGTCACAGCGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTCAGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTCAGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2457450-2447905 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP005286.1 Corynebacterium humireducens NBRC 106098 = DSM 45392 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 2457449 28 100.0 33 ............................ GCAACTGGTATCCGAGGATCTTCTGGATCTCCG 2457388 28 100.0 33 ............................ GTGGGTGGTCAGCAGCCAGTGGCCCGCTGTCCC 2457327 28 100.0 33 ............................ GCGGTCCTTCTGCGCCGTGGTCGGCGGGTCGTT 2457266 28 100.0 33 ............................ CGGGTCAAACCTGCTCACCCCCTTGCTGGTGTT 2457205 28 100.0 33 ............................ CTGGTCGCCGGGGTTAGTCGTGCCGCGGCGCTT 2457144 28 100.0 33 ............................ GGACTTCACGACGACCGCGCCGGGCTGTCTGTC 2457083 28 100.0 33 ............................ GCGTTCAGGGAGTTCGTGAGGTCAGCGTTCGAG 2457022 28 100.0 33 ............................ GCACACCTGGCTGACCCCCGCCGAGCAGACCGC 2456961 28 100.0 33 ............................ CCTGAACGGAGAAGCAGCATGACCGCCAGATCC 2456900 28 100.0 33 ............................ GGCCATCAACACCCGCCAGCTCTCCATCCCCGT 2456839 28 100.0 33 ............................ GAACCTACGTGTTCTTGTCGGCGGGGTGGAACC 2456778 28 100.0 33 ............................ CCCCATCATCCAGCTGGCGAACTCGGGGTTGAG 2456717 28 100.0 33 ............................ GAGGTCCCCGAGGAGGCGCTTCTGGGAGGCGTT 2456656 28 100.0 33 ............................ TCACCGCCCGAGGCGCACACCTCCACGCCCCCC 2456595 28 100.0 33 ............................ CGGGGCGGGCAGGTGGGGCGACGGAGAGCAATT 2456534 28 100.0 33 ............................ CCACTCCTGCAGACTGTCCGCCAGCTCACTGTC 2456473 28 100.0 33 ............................ GAAGCGGGCGACGAAGTCAGCGTGCGACTTCTG 2456412 28 100.0 33 ............................ GCACCATCCAGGTCGGTGAAAACGGTATCCGCC 2456351 28 100.0 33 ............................ ATGATCCTCCCGACGGATGCGGATACCGACCTG 2456290 28 100.0 33 ............................ TGTAGTGGGTGAGGCTGCTGCAACAGCCCACGA 2456229 28 100.0 33 ............................ GGACATGGCCCTCGAGGTGGAGGAGCTGCGTCA 2456168 28 100.0 33 ............................ CCGCTGCTTATCCCGCTCACGCTGCGCCGCCTC 2456107 28 100.0 33 ............................ GGTTGGCCTTCATCCCCTCAACCTCGTTGAGGC 2456046 28 100.0 33 ............................ GCGCAGGGCAGGCGGCCACACGGTGAACCTGAC 2455985 28 100.0 33 ............................ TCAGTCGTCATCGTCGTCGCGATGTCGTGCAGA 2455924 28 100.0 33 ............................ CGCCCCCAGCACCCACTGTGTTTCATCCACCCC 2455863 28 100.0 33 ............................ CTCCATGCTCTCCCTGTCGAATGACCCCTCCCT 2455802 28 100.0 33 ............................ GAAGGCGACGGACGCGGCCGGCCGGTCGATGGG 2455741 28 100.0 33 ............................ CACCTCACCCGTGCCCGGCCCGCCGTGCTGCAG 2455680 28 100.0 33 ............................ TCGGGGTGCCGTCCAGATTCTCCACCACCAGGA 2455619 28 100.0 33 ............................ TGAGCGGGGCGTAGGACCCGTCCAGGTCCAGGA 2455558 28 100.0 33 ............................ GGCTCTCGGGTCAGGCTGGAGCCGTAGGTCATG 2455497 28 100.0 33 ............................ GCTCATCACGGCCGTGCCCGTCCCCCAGGTGGC 2455436 28 100.0 33 ............................ GCTCCATCGTGGATTCGTTAAGCCAGTAGTCAC 2455375 28 100.0 33 ............................ CAAGGACTCGGTGTTCACACTGTGCGCGGAGCA 2455314 28 100.0 33 ............................ CTGACTTCCACCACTTCTACGGCTGTGACCTCG 2455253 28 100.0 33 ............................ CTAATGTACTTCGGCGCGCTCATAATTACTGTC 2455192 28 100.0 33 ............................ GGACAACCAGAATGGCTAACCCGAAGGGCACCC 2455131 28 100.0 33 ............................ GGAGATTGTTGCTGTGGTCACGGACTACGCGGG 2455070 28 100.0 33 ............................ CTCAAAGAAGGCATGGGCCTATCCCACACCAGC 2455009 28 100.0 33 ............................ CTGGCCGTTGTCCAGCAGGCTGGCGATAGTGCG 2454948 28 100.0 33 ............................ CAGGCCGATTGCGTCGGAATGTGGGCGCATGAC 2454887 28 100.0 33 ............................ CGAGGTGTGGCAGACCCGGCCCGCGTCCGCGCA 2454826 28 100.0 33 ............................ CTGCTCGGGCCTGACGACTATCCCACCACTGGA 2454765 28 100.0 33 ............................ GGAATCCTGGATGAAATACAAGCCGCATGACTA 2454704 28 100.0 33 ............................ GCACACCCGGCCTTTGCCGTTGTGTTGGGGCCG 2454643 28 100.0 33 ............................ CTCAGCGGCGTCGGCGATCGCCACCTGGGAACA 2454582 28 100.0 33 ............................ CGGTTCCTATGACACGTATATCAACGGGGCCAA 2454521 28 100.0 33 ............................ TCTGGCCTAGCCACTGGTGGGATTGGGTGGCGT 2454460 28 100.0 33 ............................ CAGTGGCGGGCATGCGTTCTATGTCATGTCCCA 2454399 28 100.0 33 ............................ CGTTCGACAGGTTTGGCCACTGCGATTCCGGCA 2454338 28 100.0 33 ............................ GTATGGCAGGGAAAGAGGTCGGATACCTCACCG 2454277 28 100.0 33 ............................ CGAGGCCGACATGTCTCTACACAAGATTACGGG 2454216 28 100.0 33 ............................ CCCGCCTTCGTGGTGGCGACGATCCGTGCTGCT 2454155 28 100.0 33 ............................ CTGAAGCGTCACGGAGTGGTCGGACTGAGTGAT 2454094 28 100.0 33 ............................ CAACCCTACGGCACGCAACCGAGCAAGGTTGAC 2454033 28 100.0 33 ............................ CTCATCATTGGGCTTAGACTGCTGCTCAACATC 2453972 28 100.0 33 ............................ CCCGTGCCGAATGAGCATGTCGCCACCGTCGAC 2453911 28 100.0 33 ............................ CGACAATTCCGGGTGCTCGCTATCAACAACAAT 2453850 28 100.0 33 ............................ GAAATCATGCCCCTTATTAATCAGCGACACCTT 2453789 28 100.0 33 ............................ CGCGTCCATGGTCACTGGCCTGATAGGTCCCCT 2453728 28 100.0 33 ............................ CAACTCGGTGGCCACGGGCTCGACAGCGACGAG 2453667 28 100.0 33 ............................ CACCGGTGACGTGCCCCTGTCGCCGTCGGTGTC 2453606 28 100.0 33 ............................ CCGCCTGCCACGGCCTCCGCCCACGTTGCCGTG 2453545 28 100.0 33 ............................ CTGTTCGCCGTCTCCGAGGTACCCGCGTCCGTG 2453484 28 100.0 33 ............................ TTAATGTCCGATTGAGTCAGGTTCGGCACCCTG 2453423 28 100.0 33 ............................ CTGGGATATCAACCAGCGGTCCATCGGTGTCGA 2453362 28 100.0 33 ............................ GTTGATCGCGACGCCGTCCGGGGAGAGGTAACC 2453301 28 100.0 33 ............................ CCTCGTGCACGCTGGTACGGAGGTTCATCATCG 2453240 28 100.0 33 ............................ CGCGGTGGTCTGGCCGTCACCAGCCTTAGCCGG 2453179 28 100.0 33 ............................ CAGCACAATGTGATCGAGGTCCTTGACCATCGC 2453118 28 100.0 33 ............................ CGCCCCGATACGGTTGCCGAGGTCCATCGTCGT 2453057 28 100.0 33 ............................ CATGTTTCTCATGTTCGTCACCTGTGACGTATC 2452996 28 100.0 33 ............................ CAGCACTATCGCGATGGTTACCGCCAGTGTTAA 2452935 28 100.0 33 ............................ CCGTGTCTGGACAGACCGGCCTGCATCAGCCCA 2452874 28 100.0 33 ............................ CATTCCCGTCAGTCAGCGCCGCGCAGTATCGGA 2452813 28 100.0 33 ............................ CTTCTCCGGATCGGAACCGAGCAGATCGATGTT 2452752 28 100.0 33 ............................ GAACGGCCGGAAGGCGTAATGCTCACTAGCCTC 2452691 28 100.0 33 ............................ CTCATTCGCCGCCTCCGCAGCCATAGCTGCGGC 2452630 28 100.0 33 ............................ CTCAGCGAGGGTCACCGGGCCTGTCTCCGGCAC 2452569 28 100.0 33 ............................ GGCGAACGCCGGCGCGGATGCCGGGGATGCCCC 2452508 28 100.0 33 ............................ CTGCTCGGCGCTGACTGACGGGAATGTGCGTCT 2452447 28 100.0 33 ............................ CAGCCGTAGAACATACTCTGCGCCGACCCGCTG 2452386 28 100.0 33 ............................ GTCGGCGTCGGAGGAGTAGCGCGTGCCGGACAC 2452325 28 100.0 33 ............................ GGCCAAGGAGCAGCCCGCCGAGGCCACCGCCGA 2452264 28 100.0 33 ............................ CTCATCATCGGTCTTCGCCTCACGTTCAGCGAG 2452203 28 100.0 33 ............................ GGTGGTCCGCCGTACCTCGTCGGGTGATGTGCT 2452142 28 100.0 33 ............................ CTGCCCGTCGCTGACGACGGTGCCTCCGATGGA 2452081 28 100.0 33 ............................ GGTCGCGCGCGCGCACTGTGCCCGCGTCCACGT 2452020 28 100.0 33 ............................ GGCAAGGCTTTTCAAGGCGAAACCCCCGGGTGC 2451959 28 100.0 33 ............................ CGGGTAGTCCGGCTGCAGAACGCCCGCGACTAC 2451898 28 100.0 33 ............................ GCTGGTCCGCACGATGGGTGTCACCCCGGAGAC 2451837 28 100.0 33 ............................ GTGCCCTGTCCATGTCCGTGTACGAGCAGAAAA 2451776 28 100.0 33 ............................ CGGTCAAGCCGCTCGCACTTCTCGAATGGTTGG 2451715 28 100.0 33 ............................ GAATTGCAGACCAGTATCAATTTGGCCTTCCAA 2451654 28 100.0 33 ............................ GATTACGGCACCTAAACAAGAATCCGGGGGGAT 2451593 28 100.0 33 ............................ CCGACCCTCGCTGTCCATGGCGTCCCACGCCTT 2451532 28 100.0 33 ............................ CAACACCGCTGCCCTCGAGAACGGGGAGACCTC 2451471 28 100.0 33 ............................ GGCCATGTACCCGCAGCAGAAGGAAGCGTGGTC 2451410 28 100.0 33 ............................ GGACAAGGAGATGCAGGCGAAGCTGGAGACGAT 2451349 28 100.0 33 ............................ CCGGACACGGAAACGCCGGACACGGTTTCCCCG 2451288 28 100.0 33 ............................ CCGCGATCTTGATGCGGTCCGTCAGCTCGCGAG 2451227 28 100.0 33 ............................ GCTGCGCGACCAGATCCCACTGCTCTTTTTGCA 2451166 28 100.0 33 ............................ CACCTCGGGCACGCATCCCTGCACACCACACAG 2451105 28 100.0 33 ............................ CAACAACACCACGAGGTCGACGATTCAGCCTCT 2451044 28 100.0 33 ............................ CAGAGCCTTAAACTGATCGAACGGGAACATTTC 2450983 28 100.0 33 ............................ GTGCACCCACGGACGCGCGCCCTTCAGATTCGA 2450922 28 100.0 33 ............................ CGTAGGGCACCAACCCCCCGAGCCCAGGACCAG 2450861 28 100.0 33 ............................ GGTCTTGGAGCGGGGCTTGCCGGCGGGGTCACG 2450800 28 100.0 33 ............................ CCGTTCTACGACGCTGCCGGCAACCCGATTTAG 2450739 28 100.0 33 ............................ CCCGAACGTGGGCACCCTGAACATGCTCACCGG 2450678 28 100.0 33 ............................ CTGGTGGGTCGACGGGACGGATACCGGCGTGCG 2450617 28 100.0 33 ............................ GATGTCCCAGTCCGTCGCTTCATCACCGACTGG 2450556 28 100.0 33 ............................ CATGTAGTACATGTCCGTCACCTGTCCGGTGTC 2450495 28 100.0 33 ............................ CCGGCGCTTCGGCACTTTGATCTGCACATCAAA 2450434 28 100.0 33 ............................ TCATCGTCCACACCACCGAGAACACGCTGGGCA 2450373 28 100.0 33 ............................ CCCGCAAAGCCACGCCGCACGCCCATCACGGAC 2450312 28 100.0 33 ............................ CGGCATATCCTCGCCACCACCGCCGTAGGGGGA 2450251 28 100.0 33 ............................ GAACCCCCGGGTTCTCCTGGCCCCGAGGTGCTG 2450190 28 100.0 33 ............................ CCGGCGGCGGCGCGTACTCAACCGGGAACAAGC 2450129 28 100.0 33 ............................ CCACCGAGTCCCCCGGCCCGGGCCCGGTGGCGC 2450068 28 100.0 33 ............................ CCGCGCCCGTGGCTATGACTCACAGTGGCGCCG 2450007 28 100.0 34 ............................ CCCCGACGGCACACCCTATGACCCCCCCCGAGGT 2449945 28 100.0 33 ............................ GTGGGTGGATGATGGGCGGATTACCAAGACGAA 2449884 28 100.0 33 ............................ TCATGCCCCCGTATGGGGGTGGCTAGCGGTAGG 2449823 28 100.0 33 ............................ GTGGGTGGATGATGGGCGGATTACCAAGACGAA 2449762 28 100.0 33 ............................ TCATGCCCCCGTATGGGGGTGGCTAGCGGTAGG 2449701 28 100.0 33 ............................ GTCTGCCCAGGAAACAGGACAGACGACACCGAA 2449640 28 100.0 33 ............................ CATAGGGCACCAACCCCCCGAGCCCAGGACCAG 2449579 28 100.0 33 ............................ GACGCTGGCTGAGGGCCGTGACGTGCGGAAGGC 2449518 28 100.0 33 ............................ GTACCTGGGCGATACGTCGGTGGCTGCTATCGG 2449457 28 100.0 33 ............................ CCGACGTGACGCCACCCGGCAGGCCGGACGAAA 2449396 28 100.0 33 ............................ GATCACACCCCCGCCCGCAGGCGAGGACGCGGA 2449335 28 100.0 33 ............................ CACTACGGGATCGACCTGTCCAGTGGGGTGCTC 2449274 28 100.0 33 ............................ CCGCCACATGATCAGTGCTGCCGTAGGTGGGTC 2449213 28 100.0 33 ............................ GTACCTGGGCGATACGTCGGTGGCTGCTATCGG 2449152 28 100.0 33 ............................ CATCCACTCCGAATCCTCGGAGCCCTTCGGCTT 2449091 28 100.0 33 ............................ GGGCTTCAATAGCCTGTCAGCAGCCTTCTTCCG 2449030 28 100.0 33 ............................ CTAGATCGCCGTTCACGTCCTGACCGTCGCAGC 2448969 28 100.0 33 ............................ CGCGGTCGCATCCTCTGACTTAGAGCAGTCAAG 2448908 28 100.0 33 ............................ CCACCACTACGCCACCGTCACGGTGTAGGTGAT 2448847 28 100.0 33 ............................ CGCGGTCGCATCCTCTGACTTAGAGCAGTCAAG 2448786 28 100.0 33 ............................ CCACCACTACGCCACCGTCACGGTGTAGGTGAT 2448725 28 100.0 33 ............................ GCGGTTGATGAGGAATGCTGCGACGGTGGCGAT 2448664 28 100.0 33 ............................ CGCGGACTTCACAATCCGCGCCTTGACCGCCAG 2448603 28 100.0 33 ............................ CTCATGGACGCCCAGTCCGCAGCCGACACCCTC 2448542 28 100.0 33 ............................ CCGCAGTGCGCTGTGGGTGCCCCAGTGCACGTG 2448481 28 100.0 33 ............................ GATGTGCCCGAAATCATCGACTCCAACCAAATC 2448420 28 100.0 33 ............................ GGGTTCCAGGAGATGCCAGTCCTGGCGGTGCGG 2448359 28 100.0 33 ............................ GCAGATCGCCGAGGCGGCCGGCATGTCCCGCCA 2448298 28 100.0 33 ............................ CACCGGCTTGATGCCGTCGGTGTAGACGGTCTT 2448237 28 100.0 33 ............................ GCCTGTGAATACCTACACTGCGAACGCCGAAAA 2448176 28 100.0 33 ............................ CGTCCAGCTCGTGCGCGCCAGGGATAAAATCGC 2448115 28 100.0 33 ............................ CGTCGAGTCCGGCGGCAGTCCGTCAATGGTCAA 2448054 28 96.4 33 ........................C... GAAACTAATCAACGGCTTCTCCAATAATCGCCC 2447993 28 100.0 33 ............................ TAGGCCGGGGCTTTTTGTTCGCGTGGACCAAGG 2447932 28 96.4 0 ...........................T | ========== ====== ====== ====== ============================ ================================== ================== 157 28 100.0 33 GTGCTCCCCGCGTCAGCGGGGATGAGCC # Left flank : ACCCGGATTCGATTGACGTCGAGCTGATGCTCTGGAACGAGCTCGAGGTCATCGCCGCCGGCATCAACTGGGCCGAACCGGAAGGAATCGACCTCTGATGATCGTCCTGGTCGTGACCGCCTGCCCCGCAGGACTACGGGGAGACCTGACCAAGTGGCTATCGGAGATCTCCCCGGGAGTATTCGTTGGCCGCCCCAGTGCCCGCATACGAGACCTTCTGTGGGAGCGAACTGTCGAACTGTCGAAGGACGGCCGCGCTCTGCTCGTCTACAGCACCAACAATGAGCAGGGCATGGAGTTTCGCACACACCGACACGACTGGGAACCCACCGACTTCGATGGCCTCACTCTGATGGTCCGGCCCTCCAAGAAGAAGTTCACCCGCCGGACCGGATGGAGCAAGGCCAGGCAAATACGAAAAAGCCGTTATTAGCGCGATCGACAAACTACAGTTGTATCTGCACGACGGTTTTCCATTGGAATGGTGCAGCTCAGCCAGT # Right flank : GGGCTTGCCCGCAAATCGTGGACAAATAGTTAAGCGGCTACCAGCGCCGCAGCTGGCTGATCAAGCGATAATTCATAGGCCACCGGACTCAGAAAGCCGATGGCGGAATGCCGGCGGTAGCGGTTGTAGAAGACCTCGATCCACTCACTGACACCGTCGTAAACTGGGCTTGCCCGCAAATCGTGGACAAATAGTTAAGCGGCTACCAGCGCCGCAGCTGGCTGATCAAGCGATAATTCATAGGCCACCGGACTCAGAAAGCCGATGGCGGAATGCCGGCGGTAGCGGTTGTAGAAGACCTCGATCCACTCACTGACACCGTCGTAAACCTCCACCCTGGTGGCGAAGGCATGCCGGTAGAAATACTCGACCTTCAACGTCGCCCAGAACGACTCGGCCATCGCATTATCCCAGCACACCCCGGTCTGACCCATCGACATCCGCACACCGACTTCACGGGCGGCCTCATCCAGCTGCCAGCTGGTGAACTGGGCACCGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTCAGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTCAGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //