Array 1 289825-289136 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYTK010000002.1 Pectobacterium quasiaquaticum strain A535-S3-A17 P._quasiaquaticum_A535-S3-A17_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 289824 28 100.0 32 ............................ TCAGAGGTGCGCTGGGCGCGTCTCATGCGTTA 289764 28 100.0 32 ............................ ATTAACGACGCGGATATGGCGGTATTGTGGCC 289704 28 100.0 32 ............................ TAAGATTAATTTATTCTCGTCGCTCAATGGAG 289644 28 100.0 32 ............................ TAAAAAGCGACAAAACCCAGAGGACGATTACG 289584 28 100.0 33 ............................ GCAATCGCCAAAACAAATGCCCAGCAAACTGAT 289523 28 100.0 32 ............................ AGCATCAATGGAGAGAATGAAAGCCACTGATT 289463 28 100.0 32 ............................ GCTATTTTTTCCAGCCTTTCTTTGCTTAAATC 289403 28 100.0 32 ............................ GATAAACCAATTGCTGATTTTTTTCATGATAG 289343 28 96.4 32 ...........T................ ATGTAGCTCATCCCGTCGTTGAACAGGTTCAT 289283 28 96.4 32 .................T.......... CATTGCGTAGTGCCAAGGACAACGACGCACCG 289223 28 92.9 32 .............C......A....... ATAAAAAAGCCCGCAGCGATTATCAGCGGGCT 289163 28 78.6 0 ...........TGC.........G.T.C | ========== ====== ====== ====== ============================ ================================= ================== 12 28 97.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GGCGCTCTCTACGCTAGATCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACATTGATTTCTGAGTGTAAAGCCGTACCCAACGGCGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCAGAACGGCTACGTCGACGCTCGGTGAACAAAGGCTGGCTAACGGAAGCGGAAGCCGCAGCACGAATTCCCGATGCGGTGGAAAAACGCAGCGCACTGCCGTTTGTGCAAATCAAGAGCCTGTCCAACGGGCAGATGTTTTTCGTGTTTGTGGAACATGGTCCGCTACAGGATGCTCCTATCGCAGGACGCTTTTCCTCCTACGGCCTAAGCGCAGAAGCCACCGTCCCTTGGTTCTGACCCTTTTTTGGCGACCATCTGCAACCCATTGATTTTTAAATGCAGTTGGTCGCCCTAATAAAAAAGGGTTTCTCGCGATAAAATGAATATTCTCTTTAACAATCTGGTAGTTAGCGTAAAAACCTAACTA # Right flank : TATCGGAATGCGTCGCTAGCGCGACGCATTCTTGAGGACTATTCCCCGTTGAGGGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGCTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGTATCGTTAGACTGTTGCCCAGCAGGCTACCTTTTAGGTGCGCGGACATGTCGTCGTTGCCTTCATAGGTATGGCGGTAATACGGCTCATCCTCCGGCACTAAGCGATTAAAAAAGCTCTCGAAATCCTGCCGCACCGTGGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGCTTGATGAACACCTGCATCAGCCCGACGTTTATCTGGCGCAGTCCAGTAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGTATCCACATCGCCGCCCCCTGCTATCAGGCTTCGCGTGCCAGAATCGGCCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 298400-299569 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYTK010000002.1 Pectobacterium quasiaquaticum strain A535-S3-A17 P._quasiaquaticum_A535-S3-A17_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 298400 28 100.0 32 ............................ AGCGCAGGCCCGACGATGGGGATAGTAGCAAA 298460 28 100.0 33 ............................ AGTGCTTATGCCAGCAAATCCACTATTCATGAA 298521 28 100.0 32 ............................ CTGAACTTGAAACTATTCAGCGTGATGGTATC 298581 28 100.0 33 ............................ CTACGCCGATTATGTCTGGTGTTCGTACTCCAA 298642 28 100.0 32 ............................ AGAAGATTTGACTACATTCATAATACGCCTTT 298702 28 100.0 32 ............................ AGAAGATAAACGAATCTTCCGCACAACCAATT 298762 28 100.0 32 ............................ AAGACTAGAAGACGATGGAGCGGATAAACCAG 298822 28 100.0 32 ............................ TTTAAATCCATCTGAACTTGGTCAGGGTCATC 298882 28 100.0 32 ............................ AGCAACGTGGCGTCTTCCGTGTGATCGGTAAT 298942 28 100.0 32 ............................ ATCTTGAACATCAAGCTGGTTGTTTTTCATAC 299002 28 100.0 32 ............................ GTCACCAAACTGAACTTTACGAACCGTTTCTT 299062 28 100.0 32 ............................ AACTGTTTCTATCGAGCAATTTGCGCATGAAT 299122 28 100.0 32 ............................ CATGCCAGCTTGTCCCTGAGCGTTGCCACATC 299182 28 92.9 32 ...........T.T.............. TGCTAGGTACTCGTATTGTGTCAATATCATCA 299242 28 92.9 32 ...........T.T.............. AAGCCGAACAAAGCAGCGTGTTACTGCGAGAA 299302 28 89.3 32 .........T.T.T.............. TAAATCCGCATCCGCAATGTCCGACACAAGCA 299362 28 92.9 32 ...........T.T.............. AGAGACGATCCGCAGCAAAATAATGACGGGCC 299422 28 96.4 32 ...........A................ ATGTTGGCGCTTGAGGAGAAACTCAATGAGGC 299482 28 92.9 32 ...........T.T.............. TTTTCGATTATGAATTTCAACAGGAACCCATT 299542 28 92.9 0 ...........T.T.............. | ========== ====== ====== ====== ============================ ================================= ================== 20 28 97.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CGTGACAGAGGTGCCGGTCCCCAGCATGACAACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGGCTTCCTTCCTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGATAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATCATGTATTTTCTGCCGTAATCGATAATAGCTGTGACGCCAGCGGAATGAGTCGCAGGCTAACTATTTGATAAAGAAAAAATATAATTTTCAGAAAACTAACGAAAATCAGATTATCACAAATATTCAGAAAAAATGGTGGCTGCAAAAAATATGACCCAAACACAGACCCTTTTTATTTGGCCTATTTCACAGGCTTAACAATCAATGAGTTACAGATGAGTTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTACTAATAAAACAAACCGTTAGAGTGATCGGGCTACA # Right flank : AAGCGTGAATCATTACCGCGTCAATAGATCCTAACCCGCATTTATTTCTCGCCAGTTCAGCCAGATTCGCATATCAAATTCCAACTGGTGATAATCAGGATCCATATGGCAGCAGAGTTGGTAGAAGGCCTTGTTGTGATCTTTTTCTTTGAGGTGAGCGAGTTCGTGTATCACGATCATCCGCAGGAAATCTTCTGGCCCGTCACGGAACAGCATCGCTATTCTGATTTCGTTATTGGACTTTAATTTTCCGCCCTGCACACGCGCCACAAACGTATTGGTTCCTAGCGTCCCTTTTATCGGGTTCTGTTTATTGTCGTAAAGCACCTTTGATATTGCCGGGGCGTTTTTCAGATAGCGCTGTTTCAGCTCGGTGACAAACTGATAGAGTGACTTATCACTCTGGATCGGATGACGGTCAGGGTATCTTTTTTCCAGCCAGAGGCCGAGTTTGCCTTGATCGAGGAGCGTTTGTACTTGGGCAACAATCGTTGGGGGAT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 303514-302884 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYTK010000002.1 Pectobacterium quasiaquaticum strain A535-S3-A17 P._quasiaquaticum_A535-S3-A17_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 303513 28 100.0 32 ............................ TGCCAGAAGCGCACAACATCAGTAAGAAGCAA 303453 28 100.0 33 ............................ CGCGAGGCAGGTTAAACTAGAATCAATGCCTGA 303392 28 100.0 32 ............................ GGTCTACGAAGGCCCACTGAGCGAAATTATAC 303332 28 100.0 32 ............................ TTCGCTGTAATAACTTGTCCCTCCAGGGCTTA 303272 28 100.0 32 ............................ TGTCAAGCCTATCAATGAGCATGCCGTTGGGT 303212 28 100.0 33 ............................ ATAAACGGTGGTATGCCGCGCCGCGCTCAAGTG 303151 28 100.0 33 ............................ ATCCAGACTATCCAGCAATGCTAAATTACACAT 303090 28 100.0 32 ............................ GCGATACGATCATTTGTCAGGCCAAGCGCCTT 303030 28 100.0 32 ............................ TTAGGGTTGTAGAATCCCCTGAGCCAGTGATT 302970 28 92.9 32 ...........C.C.............. GTTGCATTTCAGCCAACCAGACGGGGCGACGG 302910 27 85.7 0 .........-...C......T.A..... | ========== ====== ====== ====== ============================ ================================= ================== 11 28 98.1 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TCCTGACGTTCTGTCATAAAGTCGGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGTTTAACAGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGAGCACCTCCTCCTTAATAAATACATAAATTCAGCCAGAGACTTACCGTTTATTATTGCTGGCTAAAACATAGGCTAAGTATAGATATTAATCACTCGGTTGTATATCCATAGCATATGCAGATACCTGACATAGGCCTATTGTCGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTACGCATCGTCGTAACTTATTGATTTTAAATTTAGATTATCAGCTCTGATAAAAAGGTTTTTTCGGGGAAAATGGTTTATTTCCTTTTAAAATTAGGCAACTACCGTAAAATATGAACG # Right flank : ATTAAACGCGCCGAAAATCAGGAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGACTTCGATCTGAAAATCCTGACGCTGCTACAGACCAACGGCCGCCTGACCAATCAGGAGCTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTGGAACAGGCACAGCTGATTCTCGGCTACCATGCCCGTCTGTCGCCGAACGCCGTCGGGCTAGAATGTCTGGGATTAATTGAGGTGCGACTGATCAATCACACCAGCGAATACGTTGAGCGCTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGTGATGCCGATTATCTGTTAAAAGTGGCTGTGGCAGATCTGCCTGGACTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAACAAGAGCGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //