Array 1 265235-265776 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXMS010000002.1 Listeria monocytogenes strain 2013L-5620 NODE_1_length_1436315_cov_54.4048_ID_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 265235 29 100.0 36 ............................. GTGATATCCGTTTTACTAACTTCAACATCCCCTTTT 265300 29 100.0 34 ............................. TGTCCAGCATAAATGGCAAGTTTTAACTTTTTAC 265363 29 100.0 35 ............................. ACTTTTAACGTAATAGTCGCCTTGTCCACTTCGAC 265427 29 100.0 34 ............................. CTTTCACTAGATACTTTTGTAGCTTTGTAACTGT 265490 29 100.0 35 ............................. TGCGTTACGTCGTCCAACATGCGACACAGTTCGCG 265554 29 96.6 36 ....A........................ GTGGTTTCAGAGGCTGTGGCTGATTGGTTTGAGGAA 265619 29 96.6 34 ..............A.............. TTAGCTTGCAGATTTGGTACTGATGAAAAATAAA 265682 29 100.0 37 ............................. GAAAAAGCACTTTTCAGTACTCGTTCGTTTTCTTTTT 265748 29 82.8 0 ......A........CA.A....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 9 29 97.3 35 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GGCGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTTATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGGAAACAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTTGAGTAGTGCGAAAAACACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGGAAGGGAAGTTTGGCGGTGTTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCTCCTCCATACACAACTCCACCATCCATCAAACAAAAAAAACGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCAAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTCCTTTATCGTAATCGCCAATTTTCTTATTTTTCACTAG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 282551-284528 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXMS010000002.1 Listeria monocytogenes strain 2013L-5620 NODE_1_length_1436315_cov_54.4048_ID_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 282551 29 100.0 35 ............................. GCGAATGTCGAGGATTTGGAAACAATTAGCACAGA 282615 29 100.0 35 ............................. ATCGTCCTTCAAATCGACGGGCGAACATTCGCGCA 282679 29 100.0 36 ............................. ACGACAGTTGAGGGAGTGCCCCTAATTATCGCGAAA 282744 29 100.0 35 ............................. TTTTAAAACGTCTAAACTTGCGGAAGCCGGATTTA 282808 29 100.0 36 ............................. ATTGTTGCGGTTATCGATGGATTTACGGAAGCTATG 282873 29 100.0 34 ............................. TTTGGATATCTGAGACGAAGCAAGTTATACCCCG 282936 29 100.0 38 ............................. GTTGTTCCACTCACGCCGCTTACACGTCCGACTTTCAT 283003 29 100.0 37 ............................. ATAAATTTTCGTAAATCATTGCTATTAGCTCCAGCAA 283069 29 100.0 35 ............................. TCGATAAATCCTATTTTTGATGAACGGGAGCAAGC 283133 29 100.0 35 ............................. GCCGTAATAAAATTAGCTACAATTGCACCATCTTG 283197 29 100.0 34 ............................. TAAAAATATAAATTCGGAAGGTTTTACTCTCAAA 283260 29 100.0 36 ............................. GAACCAATGCATGAAAACATCTCAATTCTATACATT 283325 29 100.0 36 ............................. ATTTCAATACATCTTATCCAAGCAAAATGGTGTAGA 283390 29 100.0 36 ............................. TATACATCCATTCCGATATCGCTGGATGGTACTTAT 283455 29 100.0 37 ............................. GAAGAAATACGGAGGCATTCGACATTCGTGCGAGAAA 283521 29 100.0 36 ............................. CTTAACGTAATAGTGTTCTCACCTTCTACCAATATT 283586 29 100.0 36 ............................. ATTTCAATACATCTTATCCAAGCAAAATGGTGTAGA 283651 29 100.0 35 ............................. AAACACATGAGATTATTGAAGTCCATTTCAGTACG 283715 29 100.0 35 ............................. AAGTCTGATGCTTTTTTTCTTACATTTCACAGTAA 283779 29 100.0 38 ............................. CAAAACAGAGAACGCGTGTTCATTGTGGCAAATCTTAG 283846 29 100.0 34 ............................. GAAAAAGTAGTGTGGGAAAACGTTCCTAATCTCT 283909 29 100.0 37 ............................. GAAAGTAAAGAAATCAAGCCTAAATTTGTTTTCCGGT 283975 29 100.0 36 ............................. ACCAATGACCACAAAGCAAAGCAATTGGTGCTGTTA 284040 29 100.0 40 ............................. CTCACTTCCACCACCTCGCATTCTGTGTTTGTTTCGTTGA 284109 29 100.0 36 ............................. AACGCATTAAATGGCGTGGATTTATCGGATGTTAGA 284174 29 100.0 36 ............................. TTTCCATTGCCAATCTGTATAAATTCGCCGTTTTGA 284239 29 100.0 36 ............................. TTTCCATTGCCAATCTGTATAAATTCGCCGTTTTGA 284304 29 100.0 36 ............................. TTTCCATTGCCAATCTGTATAAATTCGCCGTTTTGA 284369 29 100.0 36 ............................. TTTCCATTGCCAATCTGTATAAATTCGCCGTTTTGA 284434 29 100.0 36 ............................. ACTAACAAAGCACCTGTAAAAGCTAATGCAATCGGA 284499 29 93.1 0 .......................A....C | C [284522] ========== ====== ====== ====== ============================= ======================================== ================== 31 29 99.8 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGCCTGTCGACCTCTAATAGCGTAAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGTAGAATGTCTTTAAAGGTTTTTAGCAAAAATCCGAAGGGATAAGTTATGATTTTCACCCGATTTTTAAGAGGTCGACAAATATAGTACCCTGAGTTATGATGGGAGTAGGCAGAAAATAGAGCGG # Right flank : CTTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCTAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCAAATCCTGCTCCCGCGAAAAATAATCCCCATACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCGAATAGCGTCTGTACTTTCTTATTCGCAAGGAGTTCTTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCAATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //