Array 1 939854-940858 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP082338.1 Salmonella enterica subsp. enterica strain IBG7b4 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 939854 29 100.0 32 ............................. GTTGCACGCATTCCAGTGTGGTTTAAAAAACA 939915 29 100.0 32 ............................. AACAACCCGCTAGTATTACAACGACTAAAAGT 939976 29 100.0 32 ............................. CGGGCGTACACCAGAACGGCTATTCAGGCACG 940037 29 100.0 32 ............................. GCGCAGTATCAGGGAACGGCCGTTATTACGGT 940098 29 100.0 32 ............................. GAGCGTTTAAAAATGCTCGATACGCTCCAGCA 940159 29 100.0 32 ............................. ATTCTTGACTGGCTCGATACGCTCGCATCCAT 940220 29 100.0 32 ............................. ATTCTTGACTGGCTCGATACGCTCGCATCCAT 940281 29 96.6 32 ................A............ TCACAGTTGAGTTTTGCCGAATTTTTCAACAC 940342 29 100.0 32 ............................. GCCGGACTCAACGGCGAGAACGTCGGGGACTT 940403 29 100.0 32 ............................. CAGACTGTGGATCTCAATCGGCCCGGGCAACT 940464 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 940525 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 940586 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 940647 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 940708 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 940770 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 940831 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTAGTGCTGGTAAAAAGTAGTTTATAAACAATTATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 957127-959169 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP082338.1 Salmonella enterica subsp. enterica strain IBG7b4 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 957127 29 100.0 32 ............................. CCCTCTTTCGCCGCTACCGCAGCTAACAAGAT 957188 29 100.0 32 ............................. ATTTTCATCGCCAGACCAGGATCGGTGGGGTT 957249 29 100.0 32 ............................. AAAAATTCGGCGCCAGCATCGCTGCGGATACT 957310 29 100.0 32 ............................. GCTGGCGGTGTACTCATCGCTTTGCACGGTTC 957371 29 100.0 32 ............................. GAACGCACGTCGCACAATACGACGGTTAAAAA 957432 29 100.0 32 ............................. CGCGCCACGGGTAAGACCTGGGAAGAGACGAT 957493 29 100.0 32 ............................. CTCAAGTAAACGTTAGCACCACGAATATAACC 957554 29 100.0 32 ............................. GGCATTGCGTGGTATCGGGTTTGCTAATATTT 957615 29 100.0 32 ............................. GCGCCCGTCGGGGGAAGCAAGGCGGACGGGAC 957676 29 100.0 32 ............................. TAGTCCATAGCCTCAGCCCGGCTTGTCATCCT 957737 29 100.0 32 ............................. ATTACGAGACATTGTGGAAATCCATCTACGGC 957798 29 100.0 32 ............................. AGGCGTGCATCAATTGCTATAAAGCCGTAGTC 957859 29 100.0 32 ............................. ACTGGTTGAGAAGATCCGCCGCAGAATCAGCG 957920 29 100.0 32 ............................. ATCACATCACGCAGATATTATCTCATTACAGC 957981 29 100.0 32 ............................. CGCCTACGCCTGGGAGCTAATCCCCGACAGCA 958042 29 100.0 32 ............................. CCCGTTCCACGGCGAGAAAACCCCGTCCTGCG 958103 29 100.0 32 ............................. CCGTTGACGGCGAGCGCAGACCTCGGAAATAA 958164 29 96.6 32 ............................T TGCCATAGAAGAATCTGACCCTGATAACTGGC 958225 29 100.0 32 ............................. GCGTCCTCGCCAGCGTCAGCCGGGTAATACAA 958286 29 100.0 32 ............................. GCCTGCGTGAAAAACAGGTTCATCAGGATGCC 958347 29 100.0 32 ............................. CTCCTTGAGCAGGGGAAACCCTGCCTTTTCCA 958408 29 100.0 32 ............................. GGCTGAGAAGATCGGCGGGCAAACTGCCTATG 958469 29 100.0 32 ............................. TTTATTCGCCGAAAGAGGGCGACATAGTTATT 958530 29 100.0 32 ............................. AGCCAGGCGTTATCTTCTGGCGTTCTTAGCGG 958591 29 100.0 32 ............................. GTGACAACGGTCCCGGCGCTGGAAAAGGTGAA 958652 29 100.0 32 ............................. CCAGATAGAGGCTTTAACATGAAATCAATTAC 958713 29 100.0 32 ............................. GGGGAGGGTGAATTTAACGAGCTGTATAAAGC 958774 29 100.0 32 ............................. CAAAAATGATTACTATAATCCCATGTTGAACA 958835 29 100.0 32 ............................. CTTCATCTCGCAGTACGTAAACGCCTGCATCA 958896 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 958957 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 959018 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 959079 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 959140 29 96.6 0 A............................ | A [959166] ========== ====== ====== ====== ============================= ================================ ================== 34 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGTGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //