Array 1 2557-3317 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXYG010000157.1 Streptomyces sp. McG8 NODE_157_length_14807_cov_60.8616, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2557 29 100.0 32 ............................. GGGTGTGCGTTGTGCTCGTTCAGGTGTGCTCT 2618 29 100.0 32 ............................. CTGTGGACGGATTACATCGCCGACCCCGTGTC 2679 29 96.6 32 .................A........... GAGCCGCAGCGCGTTCGACGCAGAGACGAAGT 2740 29 100.0 32 ............................. TGAACGAACGTCACCAGCGCAGCCCCGGCGAC 2801 29 100.0 32 ............................. CACTCCGCTCCGTCCTCCGCCGCGCACTCCGG 2862 29 100.0 32 ............................. ATTCTGACGCCGATCAAAACCTTCTTCGTGAC 2923 29 100.0 32 ............................. CCGGCTTCCATCAGCATGGTGATGGCGGTCTC 2984 29 100.0 32 ............................. ATGCGCGGCGAGCTCGTCGACGAGGTCACCGC 3045 29 100.0 32 ............................. TTGACGTGGTCTTCCCGCCGCACGGTGTACTG 3106 29 96.6 32 .....A....................... CGGCCTGCGTAGGACTGGAAGGTGGGGCCGAT 3167 29 100.0 32 ............................. GGCCCGCCGGAAAGGGAAGGCGCGGCGTGGCA 3228 29 93.1 32 ...................A....A.... GCCGCGGTGCAGCACGGCCAGGGTCTGCCGTT 3289 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.9 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CAACTACGACGGCCCCGACGAGGACTACGGAGACGAACTCTGGTGACCGTCATCGTCCTCACCAACTGCCCCGCCGGGCTACGAGGCTTCCTCACGCGCTGGTTGCTGGAAATCTCGGCAGGCGTGTTCGTGGGCAACCCCTCGGCCCGCATCCGCGACGTGCTCTGGGAAGAGGTCCAGCAGTACGCAGGCCAGGGCCGTGCGCTGTTGGCCCACACCACGAACAACGAACAGGGCTTCACGTTCCGCACCCACGATCACGCCTGGCACCCCGCCGACCACGAGGGCGTCACCCTGATCCGCCGCCCCGACCTTAACGCGCCCTCCCGGGGAACTCCGACGACGGAACAGAGTCCCCCTCCCGGCTGGAGCAGGGCTGCAAAGCGCAGACGCTTCGGGAGAGGCTGATGCGGAGAAAGTTCTGTATGCCCTATATGCTGGACTCTGTGGAAGTACTCGAAAACCGCTGCCACGCCGACTAAGAGGGCAGGTCGCCCAGT # Right flank : CGTCGCTGGCGGCGTCTGGCGGCGCCTGGCGGCCTGGAACGAGGCCGGTGTCTGGGAGAAGCTGCACCAGCTGCTGAACAAGCTGCCGTCGAAGAACCAGCTGGACTGGTCTCGGGCGATGGTCGATTCCTTCCACGCCCAGGCCGCACACAGAGGCCGACAAGCGGCCCCAGCCCGGTCGACCACGCACGGCCGGGCAGCAAGCAACACGTCATCAGCGACGGCCAGGGCATCCCGCTCGCGGTGTCGCTGACCGGCGGGAACCACAACGATGTCACCCAACTGCTGCCGCTGTTGGACAAGATCCCGGCAGTGGCGGGAGTCGTGGGCCGGCCACGAAGGTGACCCGACATGCTCTTCGCGGACTGCGGCTATGACCACGCCAAGTACCGCCGGCTCCTGCGGCAGCGCGGGATCCGCCCGGTGATTGACCCCCTCGTCTGGAAGTTCCAGACCGGGGCTCAATGGGGTGCAGCTGCCGGAGAAGTACGGCAGGCCGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8350-5611 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXYG010000099.1 Streptomyces sp. McG8 NODE_99_length_20661_cov_70.173, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8349 29 89.7 31 .....................G.A....G TGGGCCGGTACCGACTCCAGGCCAACCAGCA C [8323] 8288 29 72.4 31 G.CG.T...............TA.C...T GCGTGATTAACTCAGGGTGGCCATGTTGTCC 8228 29 72.4 31 G.CG.T........T......G.A...G. GTAAGCGGCTGCGGCGTCTCAACGGTGCTCC C,A [8202,8211] 8166 29 79.3 31 G.CG.A........T........C..... ATCACGTGACCGAGCACGCGGTGGGCCCGGC 8106 29 93.1 28 ..............T.............T GCGAGCGCACGACCCTCGGCTGGTGCCA 8049 29 79.3 26 ..T...TT......T........T...T. GGCCGCGAGGATCTGGCGGTGACCGA G [8044] 7993 29 72.4 28 .C...T..GCAC............AC... GAGATCCGTGAGAAGGCAAGGAAGGGCG A [7965] 7935 29 89.7 32 .....TT.......A.............. CTGTTCCTGGCCGACCTCGCGCCTCGGAACGG 7874 29 86.2 32 .....................T.AAC... CAGTTCACGTGCGGCACGACCTTCACGCCGGC 7813 29 82.8 32 ..A..T..T............T...C... CAGTACACGTGCGGCACGACCTTCACGCCGGC 7752 29 96.6 32 ........T.................... GTCACCGGCATCGGCGTGCAAATCACCATCGG 7691 29 82.8 32 .C......T........A.......G..T ACCAAGACCGGCCAGGCGTGGGAGGTCGGCCT 7630 29 93.1 32 ........T...........A........ TCGTGCGGGGTAGACCGGCGGCGGCGCTGGAT 7569 29 86.2 32 .............GG.T.........T.. GCCATATGCAGCGCGAGCGCCTCGGCGCACTT 7508 29 89.7 32 ...........G....G.A.......... TCGGCGAGGACGGCGACGCCGGCGGTGCAGCC 7447 29 93.1 32 .C..........T................ GACCCGGACGTCCGGGAGTCCGCGGAGTTCGC 7386 29 96.6 32 ....................A........ TCCGCCGCCACCTCGATACCCATCAGCCGATG 7325 29 96.6 30 ................T............ TCACGGACGCGGGCAGAGCTGCCAGTCCAG 7266 28 79.3 32 ..T.....G..........CA...A-... TGTCGAAAAGGGTGGCGGGTCCTCGAGGTGCT 7206 28 82.8 31 ......T....G.T......-.......T ACGAAAAGGTCCACGCCTTCCTCGTGAAGTG G [7181] 7146 29 96.6 25 .................T........... AGCAGCGAGAACGCCAGCGTGCCGC Deletion [7093] 7092 29 82.8 32 .A..CG..T..T................. CACACGTACCTGGCGCTGCTGCGCCACGAGGA 7031 29 93.1 32 .........A....T.............. GCCGTCGGTCAGATGCTGAAGACTGGGCTGGC 6970 29 89.7 32 T............TG.............. ACGACCCGGGACAAGAAGGCCCGGGAGAAGCT 6909 29 93.1 32 ...T.............C........... CACCACACCGCTGGCCGCAATGCGAAGGACGT 6848 29 93.1 32 .....T.T..................... CCGACCTCGATCGTGCGGCGAATGCGCTCGAA 6787 29 96.6 32 ........T.................... GGCCGGCAGTGTGGTTTCAAGCGCGGGTGCCC 6726 29 93.1 32 ........T.............G...... ACGACGTTGCGGGGCACGTCTGCGCTGCCGGC 6665 29 93.1 32 ................T.........G.. GCCAGCGCGGAATGCAGGCGCGGCCGCCGGTC 6604 29 96.6 32 ..............A.............. GCCATGGCCCACGGCGTGGCGATCAGCCACAC 6543 29 89.7 32 ..........T....A........T.... GAACCGAGGCCCAAGCCGGCATCGGTGAAGGG 6482 27 82.8 29 .......T......--.A.........T. GACCCGACGTCGGTCGGCCAGGGCGGCGG 6426 29 96.6 23 .........................A... ATGTCTTCAACGGTGTCAGGAGT Deletion [6375] 6374 29 89.7 32 ....A...T..C................. CCGGCATTCACCAGAGGACACCACCATGACGC C,AG [6362,6370] 6310 29 93.1 32 ...T...............A......... ACGCCGTCGGCGCGCAGCCGGCTGTTGGACGT 6249 29 93.1 32 .............T......A........ GCGCGCGAGCTCGTGTGGCTGGTCAAGGCGAG 6188 29 93.1 32 ............A...........A.... TGTCGCTGAAGTTCCTCGCGTTTCCCCAGGAT 6127 29 89.7 32 .......T..T.......A.......... GCCGGCACCGCAGCGCGGGCGGTGTGCCGCGT 6066 29 89.7 32 ..A...A..A................... AAGGCCGACGACCTGATCGACACGATCAACGA 6005 29 100.0 32 ............................. GTCGGCTCCACCGTGGCCCGCGACCGGGCCGC 5944 29 100.0 32 ............................. GGGCCGGTCTGCATGGCCTTGGCGCCGCGTTC 5883 29 100.0 32 ............................. GTCGGGCGGTTACCCTCGTTGGTGCGGCCGGC 5822 29 96.6 32 ..............T.............. GACTTCCCCGTCGGCGTCCGCTTCGCCACCCA 5761 29 100.0 32 ............................. TTGGCGCCCTTCTCGAGGGGGTTGTGGGCCAT 5700 28 96.6 33 ....................-........ GCCAGAGCCGCCGTCGCCAGCAAGTTCAGGTTC 5639 29 93.1 0 ........................A...G | ========== ====== ====== ====== ============================= ================================= ================== 46 29 90.1 31 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GGCATGACGCTAGCAAGCGGACGGCGACCGTATGAGGGTTTATGTGACATCAACTCACCGTTTCTAAAAGTGAGTTATGAGGCTCCGCTCGTCGTCCCTGCGTCCTTCGCCGCACTGCAGGCCCGGCTTCTTCTGGGGGCTGTCTCTCGCCTCCCGCACAGCCCTAGGGTCTGTCGTCAAATGATCTTCGGTAGAAGATCATGGTGGGGTGATACGTCGCCATGAACTGTCTGTTTCCGAGGGGGAATTCGTCCGGCCACTGCTGCCCGAGTCGCTGCGAAGCAGGAAGCGGTTGGACGACCGTACGGTGCTCAACGGGATCGTATGGAAGTTCCGTACGGAACCGCTTGGTGGGACGTGCCCGAGCGGTACGGTTCCTGGGCCACGCTGCACACCCGCTAACGCCGGTGGGCCAACGACGGCACCTTCGAGCGCATGCACCGGCCCGCTCAGGCCAAGGCCGACGCAGCCGGGGACATCGAGTGGCTCGCGTGGGCGTC # Right flank : GTCGAGATCTGCAATGGCGCGGTGGCGCGGTCAACGACCGCGTCCAGAGCTGCTCGCGAGCTGAGCCGAGGGCGGGACTAAGGGTGCGGACACAGCCTGTGGGGCGGTCCCAACGACGTGATTCGTGTCGGGGTACCGCTACCCAAGTGCAACCGACGCATCCGCTGGGTGTCGGAGCCAAACACGACGGACACCGCCTATGACCGGCCGGTGGCCGGTCCGCAGGACGGCTCGCTGGCCAGGTGCCGCTTGGCGACTTTGATGCGCCTGTCTCCGCGTAGGATTGTTCGACTGCTGGAACTCGATCAGGCCGAGATGCCCGTGCCTGGGTGGTGCCTCCGGGGCTGCCGACAGCTTCCTCGGAGGCACCCCCTTTCAGGCCTTGGCCGCTGCGACTTCACGCATTCGGCCGGAAAGCTCCCGCACCGCGCGCGTCTTCGCGTACGGCGTGAGCTCCTTACGCATCGTGGCGAAATGGTCGTCACCACGTACGGACGAGA # Questionable array : NO Score: 4.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.12, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [27-78] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 19965-20605 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXYG010000099.1 Streptomyces sp. McG8 NODE_99_length_20661_cov_70.173, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 19965 29 100.0 32 ............................. CGTTTACGGATCATGATCATAAGTCAGCAGCA 20026 29 100.0 32 ............................. AGGCCGCCGGCGACGAGGGCGATCCCCGTCAC 20087 29 100.0 32 ............................. GAGGAAGACGGGCAGGTGATCGTCGTGTTGCA 20148 29 100.0 32 ............................. CGCTGTCCGCGCTTATGGGTCGGGGGCACCCG 20209 29 100.0 32 ............................. GCGTTCATCGAGAACTTCGGGTCGATCTTGCC 20270 29 100.0 32 ............................. AGCTCAGCAGCAGCCTGCACCTGGAGGGCGGT 20331 29 100.0 32 ............................. GAAGACGCGGCGCGGCGCGGGCAGGCACCGGT 20392 29 100.0 32 ............................. GTCCCCGGCGGACAGGGCCGCGACCTGGAAGC 20453 29 96.6 32 .....T....................... CGAGGTAGCCGCCGGTATGGCCACCCTCCAGA 20514 29 100.0 32 ............................. GCTGTCGGACAGGCCATCAAGACCGGTCTGGC 20575 29 93.1 0 ...........................AG | G,C [20592,20601] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.1 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CGTCAACTACGACGGCCCTGACGAGGACTACGGAGACGAACTCTGGTGACCGTCATCGTCCTCACCAACTGCCCCGCCGGACTACGAGGCTTCCTCACACGCTGGCTGCTGGAAATCTCGGCAGGCGTGTTCGTGGGCAACCCCTCGGCCCGCATCCGCGACGTGCTCTGGGAAGAGGTCCAGCAGTACGCAGGCCAGGGCCGCGCGCTGTTGGCCCACACCACGAACAACGAACAGGGCTTCACGTTCCGCACGTACGAGCACGCCTGGCACCCCGTCGACCACGAGGGCGTCACCTTGATCCGTCGCCCCGACCCGAACGCGCCCTCCCGGGGATCTACTACGCGGCAAAGCCCGGCCTCTGGCTGGAGCAGGGCTGCAAAACGCAGACGGTTCGGGAGAGGCTGACATGCATGAAGCCTCTTGAGTCCAATATGCCGGAATCTGAGAAAGTGCTCGCAAATCGCTGCCGCTCTGACTAAAGCAGCAGCTCATCCAGT # Right flank : TGCGGCGTCGAGCGCCCTGTCCATGTCCTTCTCCCCACACCCAGCCGTCCCCCGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //