Array 1 57303-56487 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGTL010000003.1 Clostridioides difficile strain NTCD-035 3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 57302 29 100.0 36 ............................. TACCAATTATAAACAGCAATAAAAACAGGAACAGGA 57237 29 100.0 36 ............................. GGCGTTGATACTTTGATTAAGAATGCAAAAGAAATA 57172 29 100.0 36 ............................. TTTCTTATGACTGGTTTTTGAGCAGCATATTTTACA 57107 29 100.0 36 ............................. GCAGTAACTTATTAAAATATCATCATGACATGAGGA 57042 29 100.0 36 ............................. CTGCATCCTCTGTAGTCATTTTTTATCATTTGAATA 56977 29 100.0 37 ............................. AATAGATTCAGGAAATTTATTAGGTATAAATATATTA 56911 29 100.0 36 ............................. AGTTCTCATATTCATTGCCAACTACTTTGTAATCTC 56846 29 100.0 38 ............................. TGAAAAATATTAAGCGTAATATCAAAAATAGCTGGAAA 56779 29 100.0 36 ............................. GTTTTTAGAGGACCTAACTATAAGTGGTATAAAAAG 56714 29 100.0 38 ............................. GCTACAGCTATAGTCGCAGGGCTTGATAATGCACCTAA 56647 29 100.0 36 ............................. GCATCATCCATAACTGCAACAACATTCTTTGCCATT 56582 29 100.0 38 ............................. TTTATAACCTTTAATTACACCTCCCATATCACCACCAC 56515 29 96.6 0 ...............C............. | ========== ====== ====== ====== ============================= ====================================== ================== 13 29 99.7 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : TACTATTATATATAACTGAATATCTAAGTGACATCTAAGAAAAATACGATACTTACTTACATAAAACTGAACATTATTTAAAGATAACCTTGATTATATTTTCAAAAGCTTCTTTATCCATATCATCTAAAATAAGAAAATATCTATTCATAGTTATTTTTATATCAGTATGTCCTAATCTTTCAGAGATGATTTTTATATTAGTTCCAGCTAGAAGAAGAACTATTAGAATAGATAATATAGTAAGTATTTACAGATATGCAGGTGTTCTTAAATTGATAAATTATTCCATTTTATTTTTATAGTTTGAATTTTATGATATAATAAAAATATATAAATTTTGCAGTGAGCGATATTTTTGATAAAGTAGGGTTTAACAGTTGCAATGTAAGGGATTGAGGGTGTATGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATGTGTGTAAGTACTGAAAATACTTAGTTTATTTTGGG # Right flank : TTGCAACAAGTATAGGTAAAATACCCCAATAATTTATATAGCATTTTTTCCCTTAAAATATAATTATTTTTTATCATTTGTAGTAAATAATTACCAGATAACATTGACTTTAGTTTTAATGATTAAAATATAAAAGTAGAATAATTATAAAAAGTATTGAAAAGTTTATAAATATATAATAAAACTTAATGACAAGATATTAGATATAAAAAATAATTACCTTATAAGTAGATTGAAATTTATGAATATTCATACTATAATTTAAATATAAGGAGATGACCTTTGAAAATAAAAATTAAAAAATATTTAATGCTACTACAATAGGAACTAGAACTACACTTAATAAATATACAGAAATTAGATTTGGCTCAATATAAAATACAAATATAGAATTTAGGTGTTTTTTATGAAAAAAATTTTATATGCTTTATATAGTTTCATTGTTATTATAGCTAATTTTAGATTAAAAGAAAAAAATTATAACTTTATTTTATTAGCAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 311466-311111 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGTL010000001.1 Clostridioides difficile strain NTCD-035 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 311465 29 100.0 37 ............................. TTAAAAGATAAAGTATTTTATGAAGTTAGAAAATATG 311399 29 100.0 36 ............................. GGAGTACCACTGTAAAAATATATCATATTAAAAACC 311334 29 100.0 36 ............................. GCAATAGACCCGATTATAAAACCAATGTTGTATGGA 311269 29 100.0 36 ............................. CTTAATGTATGCCCTGGTACTATTGCTATTTCCATT 311204 29 100.0 36 ............................. GATAGCAAAGCTTGCAAAGTAGATATTTGTGTTTTT 311139 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 99.4 36 GTTTTATATCAACTATGTGGTATGTAAAG # Left flank : TATGCTTTTAATAATATTCATAATACAATCACCTATAATTAAATTTTTATTAATTATATTCTAGCATCAAATATTGAATAAGTCATCTTCTTTAAAATATAATAAATAGTATTTTGCTCAAATTTTCAAATGCTTCTCTGTCCATCTCTTCTAAAAACTGAGAGTAGCTATTCATAGTTATTTTTATATCTGCATGACCTAATCTTTCTGAAATAGTTTTTATATTAGTTCCAGAAAGAAACATTAAAGTTGCATTATTATAGAATTTAAACATAATTAAATGTAAAAATTAATTGAAAATATTAATTATATGCTATGATATAATAAAAATATAGAAATTTTGCAGTGAGCGATATTTGTGATAAATTGAGGTTTAGCAGTTGAAATATAAGGTATTGAGAATATATGATAAGTATTATCAATTGCACTATTGCGCGTTCACTGCAATTTTAAGAGCATTGTATATGTGTAAACATTGGAGATGCTAAGTTTATTTTGGG # Right flank : TTTTTATTACATTAAAAACAATTCTCCTAAAAACACAAATAATTGTCACAACACACAGTCCTCATATTTTACAAATTGATTCTAAAGAAGAAATGTTTGTGTTAGATATGGCTGAAAGTGATAATGTATATAAAAAAGAGTTAGAACTTGGAGAATACGGGGTATTAGGCTGGACCAATGAAGGTTTATATTTACATTAAGAGCACTCTTTTTATAGGAGTGCTTATTTTTTTGAAATTCATTAGCATATAAACTATCAAGAACATTACTCAATATGCCTTATTTACTTCACCAATGATTATCTTACATATATTAACAATAAAAAAAGACTCTAAAAAGAGTCTTTCCCGAAAAATCTATATATTATAATATAGTTATATTTTCTGCTTGAGGACCTCTAGCACCTTTAACTATATCAAAGCTTACTTGTTGACCTTCTTCTAATGATTTAAATCCTGAAGTTTGTATAGCTGAGAAATGAGCAAACACATCATCTCTAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATCAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 359206-357079 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGTL010000001.1 Clostridioides difficile strain NTCD-035 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 359205 29 100.0 37 ............................. TTGTATTATTACTTTTTATCAGAATAATCAAAAGATA 359139 29 100.0 37 ............................. AAACATCTCTTTCTTTGTCAGATATATAAAACCTTAC 359073 29 100.0 36 ............................. TTTTTTGACTTCTAGTATCTTTTATAACTTCTTCAA 359008 29 100.0 37 ............................. AACATTGCATATACACATTCTTTATCAACATTTATCC 358942 29 100.0 36 ............................. TCATAAGAAATGGTAAAACTATAAAAAGAGGAACAA 358877 29 100.0 37 ............................. CATTTTTCTAATTTCCAATCACGGTATTCTTCTACTA 358811 29 100.0 37 ............................. TTTTTAAAGTTTCTTCTGATATTGCATACCCTAGCTC 358745 29 100.0 37 ............................. TATTAAGGGGTACTTTTAAGCTAGTATTTCTATGCTT 358679 29 100.0 37 ............................. TGTTGTGGCAAAACTAGTTATGTAAAAGAGGTAGCAG 358613 29 100.0 36 ............................. AAAACTAGAAATGATAAGACTTCTTGGGGATTCTGG 358548 29 100.0 37 ............................. TAATTATTTTTATACAAATCCATAATTTCATTTTTAA 358482 29 100.0 37 ............................. GTTGTAATATCAACCACTTCATCATAATATTTTTTAA 358416 29 100.0 37 ............................. AGAATGAGTACATCAACTGGCAAGGCTTATACACCTG 358350 29 100.0 37 ............................. ACTTCAAATCAAAATTAGAAAATGGAGAAGTAGGAAA 358284 29 100.0 37 ............................. TTATTTGTTTGTTTTGTAAAGTTATTTTTGAAAAAAG 358218 29 100.0 37 ............................. TCTTTAATAATAAATGTTAATCCAATTGTATGCTATC 358152 29 100.0 38 ............................. ATCTATATAAATTAATAAAGCACCAACAATTATTCCAA 358085 29 100.0 36 ............................. TCAAAAACAGCATGTTCTTTAACAAAAGCATCTAAT 358020 29 100.0 37 ............................. TTCATTGACCAGACGTTTTGTTTACATCTAATCGAAA 357954 29 100.0 39 ............................. AGGGTACTTTAGATATTCCAGTTGCTCAAGATGTTATCG 357886 29 100.0 37 ............................. ATATTTCTATGCTTTTTGTATTGTGTGGAGATGGAAG 357820 29 100.0 36 ............................. TATTTTTTCTTCATTTTTAGCATATTCTTGTTCTAA 357755 29 100.0 35 ............................. TCTACCCAGTTCCCCGCTATGTCGTCCCATTCTTG 357691 29 100.0 36 ............................. CCTAATTTTTTACTTAGACTCTGCTGTTATTTCAAG 357626 29 100.0 36 ............................. TTTCTTTGACTCTAACAGTATCATATAATTTAGGTC 357561 29 100.0 37 ............................. TTTTCCTCTTCTCGCATATGGTCATTTATTACATTGG 357495 29 100.0 37 ............................. CGGATTTTAACTGGTTTTATGCAACAATATAACGCTA 357429 29 100.0 37 ............................. TAGACTATTTTACAAACAAACTTAACGAGTACAATGG 357363 29 100.0 37 ............................. ACAATACCCCCCTATTGCAATGCTTCATTAACTATTA 357297 29 100.0 36 ............................. TCGTATATAACTTGGCCAGCATTTTTTTCCATCCAT 357232 29 100.0 37 ............................. GCTAATATGTTAAGTAAAAAATTATCCATACATATTC 357166 29 93.1 29 ...................T...A..... GTTTTTTCTTATTAAATAAAGATTGAGTC Deletion [357109] 357108 29 69.0 0 AC........T.A....CAT.T.C..... | A [357093] ========== ====== ====== ====== ============================= ======================================= ================== 33 29 98.9 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : CCTTGAGATTGTAAAGTAACAAAGTGAAAATGTAGAAAGAGGAAAAGAAATGGAAGGAAGAAAAGTATATAGATAAAGAGATATAACACGTATTTTGATTTAACTGTATAAGATGAAAAATTTGATAATTTTGAATAGTTTAAAAAATTGTTAATGAAAATAAAAGACTTATTGAGCTAAAGTGCGATTACATAGGAAGGATGCAATAAAAAGAAAAAGGAATCATTGGAATAGAGAATATAATAAATACTTATAAGAATGTAGATACTTTTAGTTTGTAAAATTATCCCATTTTTATTTTATAGTATGAGTTTTATGATATAATAAAAATATAAAAGTTTTGCAGTGAGCGATTTTTGTGATAAAGTAGGGTTTAACAGTTGAAATATAAAGCGTTGAGAGTGTATGATAACTGTTATCAATTGCACTATTGCTCGCTCACTGCAAGTTTAGGAGAATTGTATATGTATAAGTATTGGAAATACTTAATTTATTTTGGG # Right flank : TGATTTTGTTTTTATATAAGAGAATTTGAATAATATGGAAAAAGATGATTAATAAATTATTAATTAGGGTATAAAATGATATAAATAGAATAAATAAGGGGTGGATGAAATGCTTGTATATAATAAAAGTTTTTATCCTAATGACATATTTCCAAGATTAGATTTTTCAAAAATAAAAAAACAGTTAAAATTGATAGATAATGACCTGTCAGATTTTGGAAGCATATGTATAATAGAAAAAGAACATTATACGATAAGTGTAAACAGTATAGGTGAAATAAATGTGTATTATGATTTAGAGTACGAAAATAAGGTGTATAGAATAGTTTATGAGATTGAAAAGTTATTTAAATCTCAAGTTGGAAGGTTTAGTATATCTACATACAGAAATTGATAATTAAAAAAGTAGAAATTAAAAAACTTAATACTAAAGATATAGATAAATATATGAGGTAACAGCTAGAGAGAGTTGTTACCCTTTTTAAATACTAAGTATATAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 1839018-1838611 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGTL010000001.1 Clostridioides difficile strain NTCD-035 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================= ================== 1839017 29 100.0 37 ............................. CTTAATGATGATGACATTAACAGTAATATAGAGCTAG 1838951 29 100.0 36 ............................. TCAAATAGATTAAGCTCTTTATATTTCCAACTCTTT 1838886 29 100.0 35 ............................. GAAATCGTGAATCAAATTGAAAAACAACAGAAAGA 1838822 29 96.6 37 ............................T TTCTTATTTTCTCTATAGATTTTTATAGTTGTTCTCC 1838756 29 93.1 89 A..............A............. AAAGGTACTCTTAATTCAATTTATAAGCAACTAGGGATTTTATATTAAGTAAATTCAACTATAACCAACTTGATTACAGTTGAATTTAT 1838638 28 72.4 0 ......C......A...CA.-..AA...C | ========== ====== ====== ====== ============================= ========================================================================================= ================== 6 29 93.7 47 GTTTTATATTAACTATGTGGTATGTAAAG # Left flank : AATCTGACCCATTGGAGAGAATCAAAAAGTTAAAAGAATTATTAGATATAGAGGCTATTACACAAGAAGAATTTGATGCTAAGAAAAAGGAACTATTGAATTTGTAAAACACAAGATTACCTAAATATAAACTAAAGGGTGCGTAAATTACACAAAGGATGTTATTTCTACTATAGTAGGAGATTTTTTATATTAACTATGTGGATTCAAAGATAAATAGAAAAAAAGAAGCACTTACTTTTTAGTATAATCCCTTTATAGTAGGTGCTTTTGTTTTATTTAAATTATTCTATTATTATTTGAAGTATCATTTTTATGGTATAATAAAAATAAGGAAGTTTTGCAGTGAGCGATATTTGTGACAAATTAAGGTTTAACAGTTGAAATGCAAAGCATTGAGAGTATGTGATAAGTATTATCAATTGCACTATTGCCCGCTAACTGCAAATTTAAGATAGTTGTATATATGTAAGTATTGAAAATGCTAAGTTTATTTTGAG # Right flank : TAAATAAACAAAGAAAGCACTTACTTTTGGTAAGTGCTTTTGTTTTGCCCAAATTGGTCGGTTGAGTAAAATAATTAGAAAAAATTGGATATATGATTGACTTTTGTCTGCCGAAACCATATAATATAATTAAGGCAGACAAAAGTGAGGTGAAGATATGCCAAGTAAAAAAATAGGTAGACCTACAGATAATCCTAAAGGCAGTAGAATAACTATAAGATTGGATGAAGAATCTAAAAATATTCTAGAGAAATACTGTGAAAAAGAAGATATAGACAAAGCCGAAGGAGTTAGAAGAGGTATAAAACTACTAAAAGACAAATAAAAAGTAGCCCAACCGCCGACCAAAGCAAAATGGACTACTTACACCAGAAGTTACCTTCTATGAAATATTTTATCATAGTAAGGTACTTCTTACAATAAAATTTCAAGGAGGATTTTACTATGAATGAAATAATGAATTTTGAAGGAAAAGAGATTGAAATATTTGAATATAATGG # Questionable array : NO Score: 4.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:-1.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 4 3532854-3533014 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGTL010000001.1 Clostridioides difficile strain NTCD-035 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 3532854 29 100.0 37 ............................. TCACATCAACAAATTCAGTTGTGTCATTTGCAGTCAT 3532920 29 100.0 37 ............................. GTTTTTGATAACTTAAAATCTAGTTTTGCAGAGTTAG 3532986 29 79.3 0 ....................A.AAA..TA | ========== ====== ====== ====== ============================= ===================================== ================== 3 29 93.1 38 ATTTTATATTAACTATGTGGTATGTAAAG # Left flank : CTGCAAAAAACATTTTCAACAGGAAGAGATGTAGCTTCAAAATGTTGGCAAGAGTTAGGAGATTTAAAAGATAAATATAGCACTGAATCAACTGAATATAAAGCTATACAAAACTTGCAATTAGCATTTTTTGTGGTAAAAGATGCATGCAAAAATGGAATAAAATATTTAGATAAAAATGAGTATAAATATTATGAGAAATATGAGAAAAACTGTGGTGAGGCTGGTGCGTGGTATAGTGATTTCGTGGCGTTAAAAGGAAATCTCAACTAATATGTTAAGATAAAAAGAATTATACTTAAGAAGCTTTATTTTATGATATAATAAAAATATGTAAGGTTTGCAGTGAGCGATATTTGTAACAAAGTAGGAATTAGCAGTTGCAATGTAAGGTGTTGAGGTTGTGTGATAAGTGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTAAGAGAGTTGTATATGTGTAAGTATTGAAGATACTCAATTTATTTTGGG # Right flank : AAATAAAAAAAGAAAGCACTTACTTTTGGTAGGTGCTTTTGTTTTGCTCAAATTGGTCGGTTGAGTGAAATAATTAGAAAAAATTAGTAAAAAACTCTTGATTTATTGTACGTACTATATTATAATTTAAGTACGGACAATAAAAAGAGAGGTGATAAGATGTCCAATAAATTAGGCAGACCACCAAAAGAAAATTCTAAAAAATTAAGATTTGAAGTTAGACTTAATCAAGAGCAAGCTGATATATTGAATGAATGTGCTGAGAATCTTAAAATATCTAAAACAGATGTTGTAATTAGAGGAATTGAATTGGTGAAAGAGAAGCTTGACAAAAACAAATAAAAAACAGCCGCTGCACCGACTAAAGCACTTGCGACTGTTTCCCAAAGAAGTTACCTTCTATGAAATATATTCTATCATAGTAAGGTACTTCTTACAATAAAATTTCAAGGAGGATTTTACTATGAATGAATTAATGAATTTTGAAGGAAAAGATATAG # Questionable array : NO Score: 5.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 5 3683380-3684134 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGTL010000001.1 Clostridioides difficile strain NTCD-035 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 3683380 29 100.0 38 ............................. GATAAGGCATCTGAATATTAATAACACCAGAGTCGCCA 3683447 29 100.0 37 ............................. CTTTATTTAGAAATAAGTAAAAGGCTTAACGACTAGA 3683513 29 100.0 38 ............................. AAGACATGTTGCATATGTACAAAAGAAGTTGAGTATGA 3683580 29 100.0 36 ............................. TTTTAATTTTTTTTCTTTTAAATCTGCAAAAACTGC 3683645 29 100.0 36 ............................. CTGGGTGTTTCTGTTTTTTCAAGAGCAGTTGACTTA 3683710 29 100.0 37 ............................. ATTATTACTTAACATAATCCTTGCAATTCTAAGAATT 3683776 29 100.0 38 ............................. GCAACAAAAAAGAGCAGTACAAAGAAGAGTACGACAAC 3683843 29 100.0 37 ............................. AAAAGTGTTGAAATTGATGGGAAAGAGTATAAAATTA 3683909 29 100.0 37 ............................. CCGCTATAGGCTTCTTCACAATAAAGACTTTCACAAT 3683975 29 96.6 37 ..................A.......... AGTCAAAACTCAACACTTCAACATTAGGATTATTATA 3684041 29 96.6 36 ............................A AACAAAAAAGATACATCTGTAACTAATTTTTATACT 3684106 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ====================================== ================== 12 29 99.1 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : CTATTAACTTATGAAATATCTGTAAATGAGCAGATATTTCATAAGTTAATATTTATTGTTTACATAAAATATTTGGTAAAAATAAGTAAGTTTTATATGTTATAATAGTTGTAGCAAGAATAATAATCTAAAGTGGCAAGCATGTCAGCTGGTGTTATATCAGTTTATATTTATGATAAAATAAAAATCTCCCAAATGCCAATAAGAATGATTTAAAAAAATAATATTTTCACTTAAAAATAATCACTCTTTATAGGAGTAAATTATTTTCTTGATTTTATTGTACTACAAATTGGTACAGATATTTAAAAATAATATATTCATAATATTATAAATAGTTTTGCAGTGAGCGATATTTTTGATAAAATAGGGCTTAACAGTTGAAACATAAGGCATTGAGGGTATATGATAAAAATTATCATTTGCACTACTCGTGGTTCACTGCAAATTTGAGAGAATTGTATAGATGTAAGTGTTGGAAATACTCAATTTATTTTGGG # Right flank : GACAGATATAATGTCAAAATAAGGTTAGGACTTTTAAAAGCATAGCCATATCAGTAAAAATTTAATTATCATTTAAAAAATAAATTTTTATTTAAAGAATACACATAAATATTTCCAGACTCAACTCTCTTAAACTATTTTCATATCTTTTAGTAGATACCTTTGTTGTTTTTTAATCTTTAGCAACTTGTTCTTGAGTGAACCTCTTATTTTTTCTAAGTTATTTCAAGCTTTTCAAAAAATTCTCTATTTATATTCATCACACATATAATACAATTAATTCAGTTTTAATTGCCAATATTTAGTTTTTCTGTATCTGATAAACCAAGAATATAATCAGTATATAAACCAAAAATTTTAGCAAATATTATTAACCCATCGTCTCTTGTTGGTCTTTCACCAGACTCTATTCTATTCATAACACTTGTATTTATATTTGTTTTTTCAAGCAATTCTTTTTGAGAACTATTCATATTTTCCCTAATATATTTAATCCTTTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 6 3898446-3899197 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGTL010000001.1 Clostridioides difficile strain NTCD-035 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 3898446 29 100.0 37 ............................. TAATTATATCGTAAGCATGATTGCTATATGATTTATA 3898512 29 100.0 37 ............................. TATAAATAAATAAACAAAAACCATCAACATATATTTT 3898578 29 100.0 36 ............................. TTTAATTTTGCTAATTTATGTAAGACTTCTCTCTGC 3898643 29 100.0 36 ............................. TTTTCCCAAATCCTTACATCTCCCCTAATTTTTAGG 3898708 29 100.0 37 ............................. CAATATCATGAAATTTCATTCCCTCAACTTCTAAAGT 3898774 29 100.0 37 ............................. CAGGTAAGGATGCACCGAAGCTTTTTATAGTTATATT 3898840 29 100.0 37 ............................. AAGCTTTTTATAGTTACATTGTCTGATGTTCCACCCC 3898906 29 100.0 36 ............................. TGGATATTCTCTAATTTTTAACGCACTACATGCTTT 3898971 29 100.0 38 ............................. TAAACTGTTGGTTCTACTGGTGTTTCTTCTTTATTTAA 3899038 29 100.0 36 ............................. TTAGACGATGAAAATTTAGGACGTAGTTACATAGAA 3899103 29 96.6 37 .......................A..... AGTATAATGTTGAAAAGTTAGAGAGTACAATCAAGAA 3899169 29 69.0 0 A.....C.........AAT....AG..TA | ========== ====== ====== ====== ============================= ====================================== ================== 12 29 97.1 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : TACAATTTATAGAGTGGAGTTCATACAAAAGATTATCCTCCCAATGTATAGAAGGGAGGTGAGTATGTATAGATAATTTTTTACAAGGTGTACTAGCAAGTTTAGTTGCCAGTTTAATAGTTTACTTAAATAGTAAATTATTTAAAAAAGTAAAAAGCCACTCTGGCAGGAGTGACTTTAGTTTTGAACTAAAAATCAAGTTCAAAAAGAATAAACATTAGTATTTGAACTTCACTCTACATCTAAATAGATTGTAGTTCTTCTTATTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATATTTATGATATAATAAAAATGTAAATAGTTTTGCAGTGAGCGATATTTGTTACAAAGTAGGGCTTAACGCTTGAAATATAAGGTGTTGAGGGCATGTGATAAGCTTTATCATTTGCACTACTCATGGTTCACTGCAAATTTAAGAGAGTTGCACATGTGTAAGTATTGAAAATGCCCAGTTTATTTTGGG # Right flank : AAAACATGTATTTATACTTAAATTCTGTACCTATATAAAAAAGTGAACTCTGTCAACAAAGCACTTTTTTATATAGATAAATTATCATTTTGTTTTAAGATAGAAGATACTAATGATAACTGTTTATCATTAGTATCTGTATGTACATAAAAGTTTAATTTTTTATATAAATTTGCTCTTTAGAAAAATGAGCAGTATCAATAAATATATTGTCTAAATTTTTTCTAGGAACTAGTTGACTAGCTATAAGATTAGCTTCAACTCTTTGATTGTTAGACTATGAAATTAAATTTAAAGGTTCATTCTTGGTCGTATAAATAGCTTTATTATTCGTATGTACTATAACAATTTTTGCCATCTGCTTTTGATAGATAAAGAGCTTTATCAGCTTTAGAAAATAAATCTTTATATAATTTAGTTGAATCATCAGTGAAGGCAATACCAATACTTAATGTTATTTTATGATTGTCCTTTACTTTTATTTTACTTGCATCATTTAA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 7 4009477-4010163 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGTL010000001.1 Clostridioides difficile strain NTCD-035 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 4009477 29 100.0 38 ............................. GACCTTTCTGTTTATTTTAGAAATCGTTCTGATAGTGT 4009544 29 100.0 37 ............................. GTAATGTTAAATGGTATGTTGGCAGGATTTGAACAAT 4009610 29 100.0 35 ............................. TACAAAAAAATTGAAAAAGACCTCTAAGGGTGCTA 4009674 29 100.0 37 ............................. AAGTCAACATAAATTTCTAATTCATTAAATACTCTAA 4009740 29 100.0 36 ............................. ATTACAGGTCATATGGGGTTTTGTATAAAGGCTGAA 4009805 29 100.0 37 ............................. AAATTTCTTAGTATTTTTTCATCTATAAATTTTAACG 4009871 29 100.0 37 ............................. CCTAACGCTATGCAATTTTTGAAATCCTCTATATTGT 4009937 29 100.0 37 ............................. TCTGTCTTAATTAATCCCATTGCTTCAATTTTAGCAA 4010003 29 100.0 37 ............................. GCTTTTATAAGTAATCTTGCTATTTCTAATCTATCTG 4010069 29 100.0 37 ............................. GTTTTTGTCCCAGTATTAAATTTATTTAATACTAATA 4010135 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 11 29 100.0 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : TAACCATAATAAAAATAGATATCTATTTTTAGATTAAAAATAATATATCATAAATAAAATAATAAGAGGTAGATACAGTTTTAAGTGAATACAAAAGTTTTTAATTAAACTATGCTTGTTCAGATAGATATTTATTTAAGAAAAAAGACCATTAAAAGCAATATACAAGAATGATATATTAGATTGATTAAACAAGCATAAATATTATGTAAAAAACTTTAAGTTATAGAATTTAAATCTAATGTAGATAGATTACGTTTTTTCTTGTTTTTATTATGGTATAAATTGGTATCAATATTCAAAAGTAATATATTTATGATATAATAAAATTATAGAAATTTTGCAGTGAGCGATATTTGTGATAAAATTTGGCGTAACAGTTGAAATATAAAGTGTTGAGAGTGCATGATAAGCGTTATCAATTGCACTATTGCTCGTTCACTGCAAATTTAAGAGAGTTGTATACGTGTAAGTATTGAAAATACTAAGTTTATTTTGGG # Right flank : TTTTTATAATTTTCTTTTAAGGTGTTATCTTATGATTATCTAGTTATATTAGCATACAAAAATATAATAAAATTACACTATATTATAAAAGTCAAAAGGTAATATAGAAATCTTATCACCTTTTTTATTATTAATTTTGTCAGTGTTTTATTATAAATAGCTTATATAATTACACATTTTTTCTGATTAAATAATGTGATGCTATTTTTATAATAGATACTAATGTTAATGATGTTATTGCAGTATCCAATCTTATTATTTAATAAACTCATTTCTATATATTCAAGTTCTATTAAATATTGATAAAATATTTCTAGTTTAACAGCTTTTTCTCTATCTATATTTTATACTTTAACTCTAATTTATCTAAGGCTTTTTTATTACAATAATTAACTTTATGTTTAATTAAATACCTTATTGTAGCACCTATTACAACTTCCACTCTAACAAGCATAAATATAATATTCCATCCAAAAGTTAAGAGGGTATATCTTTTTTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 8 4094608-4094901 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGTL010000001.1 Clostridioides difficile strain NTCD-035 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 4094608 29 100.0 37 ............................. GTAACATTGTTCAACTCTTTTGTTTTATTAGATACTT 4094674 29 100.0 37 ............................. CCAATAATACTATCTATAGCTGATTTTGCATCTGAAA 4094740 29 100.0 39 ............................. TAGGAGTAGCTTTGAATAAACACATGTCACAAGATTCAA 4094808 29 89.7 36 ...............A........C...A ATTGTTTTAAATTGATTAAGTACATCTGTTGCATTT 4094873 29 72.4 0 A...........T.....AT...AC..TT | ========== ====== ====== ====== ============================= ======================================= ================== 5 29 92.4 38 GTATTATATTAACTATGTGGTATGTAAAG # Left flank : ATTGTAAAGAAGCTGTATTTGTAACTGAGGGAATTGAATATCAAGTGGCAGATGGTGATGGAAATGTGCTACAAACTTATCCAGTAGACGATTCAACTAGAATGCAACAAGAAACAACAGCAGGTACGAAATCAAAGGGAACAACAGCGTTTGCTATAACATCAGACTCAAATGCTGTAAAAATAATTGTAAAAGATAAAGTAAATAATAAGGTCATGGGAGAAATAAATGCTACTTTAGAATAAAAATAGTATTAGAGAAAAGAAAAAAGTTAATAGGTAAAATATTCTAAATGAATAGAATAAATTAATGTTAATTTATGATATAATAATAATATAGATATTTTGCAGTGTACGATTTTTTATAACATTGGATGTAATCATTGAAATTACTACGATATAAGCATATTTTGTGATGTGTGAAAACACTACTGGTTACTTACTGCAATTTTAATATAGTTTTATATGTGTAAGAACTGGAAATGCTCAATTTATTTTGGG # Right flank : TAAATTAAAAAATATATTTGAGTTAGAGAGGGAGTAGTTTATGTCGTTATTTGGAAGTAAAATTACAAAAGAAGAAAAAGAGAAAAATCGAGAAGAAACTGAAAAGCATTATGAAAGACTTAAAAATATGACAAAAGAAGAGAAAAAAGAGTATGAAATTCAAGAGTTTATGAAGAAATATCAATTAGAAAATTTAGATGAAAAAGATTTAATAGTGTTAAAGAGAATAGCAAGTGATTTGTTTGGAAATGGTCTTATTAAGGCAGGTATGGCTTTAAGCTTTACTGATGCAAAGGAACAAGCAAAAATAGGATACCTTAGTGCTTTAACAGAACAAAATTGGATGATAATTAGACAGTTAGCTCAGTTGAATAACAATATAGAAAAACTTATAGAAGATAAAAAAGAATAAATTGAAAATAGCAATACAGACACTTACTTAAATAGTAGGTGTTTTTTTATATGGAATTTTGAGGAAGGGAGGGAAAAATATGTCCTTA # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //