Array 1 1-1550 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXIQ01000080.1 Micromonospora endophytica (Xie et al. 2001) Li et al. 2019 strain JCM 18317 80, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1 28 100.0 33 ............................ GTTGTGCAGCGCCTGGGCGTAGGGGTGGACGTG 62 28 100.0 33 ............................ CTGGCCGAGTCGATCGGCGTGGACCCGGCGGGA 123 28 100.0 33 ............................ CTGGTACGCCGGCAGATCCGCACCGGCAGCGGA 184 28 100.0 33 ............................ CGGACACCGGGCGGCGTCGTAAAGCTGGTGGAC 245 28 100.0 33 ............................ CGCGCCCGAGAGGAGGCCGAGAGTGTCGACGAA 306 28 100.0 33 ............................ TCCGTACAGACGGCCGGTCGGCTTGCGCCGCTT 367 28 100.0 33 ............................ CTCGTAGTACGAGACGACCTTGTCAACTACCCA 428 28 100.0 33 ............................ GGGCACCGACTTCCGCCGCGACCAGCGCGCCGA 489 28 100.0 33 ............................ CGATGTGGTGCTGCTCGGTCGCTTCGGCGATCA 550 28 100.0 33 ............................ CCGCTCGTGCAGCACGATGACCCCGGCCTTGAT 611 28 100.0 33 ............................ CACGTCGGTTTCTCCGCCGGTCGCCGGTCCACC 672 28 100.0 33 ............................ GGTGACCAAGCCGGACGGGGTGACGTGGCAGGA 733 28 100.0 33 ............................ GGGCAAGGTCGTCGCGCCCATCGGCGTGCGGAT 794 28 100.0 33 ............................ CTCACGCCATACGGCGTCGTCGTCGTACCCGGC 855 28 100.0 33 ............................ TGGGTAGAGGAACATCCGGAACGGTTCGCCAAT 916 28 100.0 33 ............................ CTCGGCGGCGAACCCAACCGACATGTCCGCGCC 977 28 100.0 33 ............................ CGTGGTGCCTAGGCGCTCTTCGTTCATGCGGAT 1038 28 96.4 33 ..........T................. ATCGAAGGTGGCGATCTGGCCTGCGGCCTCTGC 1099 28 100.0 33 ............................ CGATGACGGCCGCCGCAATCGTTGGCCGCTCGG 1160 28 100.0 33 ............................ CGCGACCACGGCCGGCCAGGTTTTCGGCGCACC 1221 28 100.0 33 ............................ CGCGGGATCGGGATGCGAGTGCGTGAGCCGGCC 1282 28 100.0 33 ............................ CGCCGGGGCGACCCCGCTGACCCCCGGGGTGGG 1343 28 96.4 33 .............G.............. CTCGTCGGCGGTCGGCACCATTCCGGCCGCGAA 1404 28 100.0 30 ............................ CATGGCCGACGACTACGTCTACATGGCCTG 1462 28 82.1 33 ....A........T...A...A...C.. TTTTCGCCGTTCCACGATCGGTGCGATCTCCAC 1523 28 85.7 0 .......G..........A.......TG | ========== ====== ====== ====== ============================ ================================= ================== 26 28 98.5 33 CTGCTCCCCGCGCATGCGGGGGTGATCC # Left flank : | # Right flank : GTTTGGCAGATTTGGCCGCTGGTCGCGTCACTCCGCGACGAAGACGCCCCGGCCGGGACGGCCGACCAGCACACCCTGTTTCCGCAGGGTGGCGACCGCGCGATGGATGGTCGACAGCGACAGGTTGTAGTGATCGGACAACTGCTGGGTGGAGGGGATCTGGGAACCCCGCGGAAGTTCGCCGTCGTCGATCCTCCTCAGCAGATCCTTGATCAACTCATCCATGGTCGGCGGAATTGGCACGTGGAGGCCCCTTGCGGTCGGTTGGCCCTCCCAGTATCGATCAGCACCTGACAGAGCGGCAATAACTGACGGGGAAGCAGCAGCCAAGACGGGAGCCAGATTCGACAGGTAAGCAAGCGTTGACAGAGGTGAGAGGTGTCGGTAGCGTGACTCTCGGTGATGCGGGCTGTGCGGTCGGTTGGCGCCTCGTACTGGTCTTGTGTTGCCTGGTTGGCCCACTCTCGCGCGCTTCCCCCGCGCGCCCCTGCTGTCGTACG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 1 1099-34 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXIQ01000066.1 Micromonospora endophytica (Xie et al. 2001) Li et al. 2019 strain JCM 18317 66, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1098 28 100.0 33 ............................ CCGGGGGTTCGCGGGAGATGGTCGTCGCCCATG 1037 28 100.0 33 ............................ CCTGCTGGGCCGGGAGACGATCTCCGACGCGGC 976 28 100.0 33 ............................ GTGCTCCCGCAGTTCGCCGACCGAGCAATACCC 915 28 100.0 33 ............................ CGCCGAGCACCGCCCGCCAGCCAGCCCGGCCGC 854 28 100.0 33 ............................ CCGCCACCCCGCCTGGCTCGGCAGCTGCGCGTC 793 28 100.0 33 ............................ CTGTTGGCGTGCAGAACAGTGCCGTTCGAGTTG 732 28 100.0 33 ............................ CGCCGCTGCTGGTCGTCGGACACCGCCGAGGCC 671 28 100.0 33 ............................ CCCGCGGGCTGCGACCGCCGAGCAATCCGAGCG 610 28 100.0 33 ............................ GTTGCCGATGTTCTCCGCCCACCGGCGCTGGTA 549 28 100.0 33 ............................ CAGGACTCCGAGCGGACCGGGCGGCGTAGCCCC 488 28 100.0 33 ............................ GCAGCTCGGCTACGACCCGATCAGCTGATCCCG 427 28 100.0 33 ............................ TACGGCGGGGACTGCGACGTCTACCGGCTCGCC 366 28 100.0 33 ............................ CTCGACCCACTTGGGGTCGGCGTCGATGTCGGC 305 28 100.0 33 ............................ CCAGCGCCTCGCCTGTGTCTTCGCCGCCCGGAT 244 28 100.0 33 ............................ CGAATGGTAGACGGCACCGGATTCGGGCAGATC 183 28 100.0 33 ............................ CTGCCATCAAGGTTCGTCCGGTCGCCCCCACCC 122 28 100.0 33 ............................ CTCTCGCAAACTGATACCGAGCCGTCTCGCAGC 61 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 18 28 100.0 33 CTGCTCCCCGCGCATGCGGGGGTGATCC # Left flank : CCGCGATGCGCGTGCGGACCGCAGCCGGCAGCCACACATCCCACAGCAGCCCGGCCACGTCGGCACTGTCGGCAAGATGCCGATAAAGCGGCAGCCAGAAGCCACGATCACGGTTCGTCTTTCCCCAGACGAGGCGGGCACGCTCGCTCAGACCATGTTGGTCAGTCACGGAAGGAACCAAACCAAAGGGGTACGACACTCGCCGCCCACTCCCACTCCAACGACCGCGCCGCTACGGAACCGCACCAGCGCACTACACCGTCATGAACGACAATCGCGTACGCCAGACACGGCCATCCGAAAACTCTTCCGATCCGTCCGCCCCAAGCACATTCGCCCACCGTCCCAACCTCAGCCGCGAGCCTGAGTCCAACCGGTACGCTGGCCCGACCAACGAAGCACAGCAAAGCCACTGCCCCCGGAGAGCCGCAAAGATGATCTCCAAGGTCCTAGTGAATGAAAACGCGAAAGTTGATCTCTAGCGCCCCAGGTCAGGAAGC # Right flank : CCGCCGACCATGTGCCGTCCGCGTTGCGGCCCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [15.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 2 10897-11761 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXIQ01000066.1 Micromonospora endophytica (Xie et al. 2001) Li et al. 2019 strain JCM 18317 66, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================= ================== 10897 28 100.0 33 ............................ CTCGGTGGACCTGTCGGGCTGGGTGACGTCGGT 10958 28 100.0 33 ............................ CAGGCGTTCCCCGTGAGGCAGTAGGGCAGTAGC 11019 28 100.0 33 ............................ CGACCACCGAAGTTGGTCGCCGGACGCCCAGAC 11080 28 100.0 33 ............................ GGAAGGCTGAACATGCTGGTGATCGCGGTAGTA 11141 28 100.0 33 ............................ TTTGGTTCCTGTCACGGGAGATACGACATGGCT 11202 28 100.0 33 ............................ GCCATGGTTGAGACTGCCGCGCGTTCTACTCAC 11263 28 100.0 33 ............................ GCCGGTCGCCTTCACCGGGCGGTGGGAGACCCT 11324 28 100.0 77 ............................ GGTGGCGTAATGGCGACGGTCGTGCACGAGATCCTGCTCCCCGCGTCCCTGATCTTGGCCGGGATCAGGTTGGTCAA 11429 28 100.0 33 ............................ GGCTGCGGACCTTTGTAACGCAGCCGGGTGAGC 11490 28 100.0 33 ............................ CCGGTGCACGTCCATCACGCGGCCTCGGCCTCG 11551 28 100.0 33 ............................ TGGACGTGGATCGACGCCGGTGGCCGGCTGTGG 11612 28 100.0 33 ............................ CGACGACACGCCGTACGCGGCGCTGACCGTCAC 11673 28 100.0 33 ............................ CAGCACGGAGGGCGCGGCGGTCGGGGCCGTCGA 11734 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ============================================================================= ================== 14 28 100.0 36 CTGCTCCCCGCGTACGCGGGGGTGATCC # Left flank : TCTGGGACGAAAGCGGCTATGAGCTGACTGGCGGCCGAAACTACAGCGGGGACGTCGACTTCTGATGACCGTCATCATCCTCACCGCATGCCCAGAGGGCCTACGCGGCCACCTCACGCAGTGGCTACTGGAGATTTCCGCCGGCGTCTACGTCGGACACGTCAACACGAGGATCCGTCAGCGCCTGTGGACCAAGGTCGTGGAGATGGCCGGCCCCGGACGGGCGCTACTGGTCTATCAGCAGCCAGGCGAGCAACGCCTCTCCTTCGAGGTGCACGACCACCACTGGCAGCCCATCGACCTCGACGGCATCACCCTGATGCGCCGACCGACCGAGCGAAGGACCTACAACCCGGCGACATCTCAAGGCTGGAGCAAGGCATCAAAGCGCCGCCGATTCGGCCGAAAGTCGACAGCAGGCCCCGACAGCTCAGCAACGAGCCCCAAACAAAGTGAAGAAAAATCCCAGATTTGATCTTTAGCGCCCCAGCTCAACAAGC # Right flank : CGGCGTCGGTGCGCAGCCGGATCGGCTGAGGTGGATACGGACGGAGGCTGACAGCCGTGACCGAGCGTGGGCTGTCTTGATCGTTAACAGCGGGCGAACAGGCCCAGGCAGCGGATGGTGTGCCCACTCACCGGCGGCGATCCAGCCCGCCTCACCCGTGCCGAGCAGGGCAAGCTGATCGACTCCCGAGGGCGCGCACCCAGTGCTCGCGCATGCCGACTCACAGTTCCGTTCGGGAGTTGTCGCGCGAGGGCTGCGTCAAGCGGCGGCGGGCCCCTGGTCCTGCTTGAGCGGGGGTCTTCCGCCCCTGCTGATCTTCCCTACGCGACCGGCAGCAGTATTCCTGGGTGCCAGCTGCGACACGCGCTGCGGGGAAATGCCGAGAAGAGCGCCCACGTCGCGGACTGTGTAGCCCTCGGCGAGTAGTGCGCGTGCGGCCGTGACTGTCGCCTCCTCGGCCGACTCCTCAGCTTTCCGCAGGGCGCTGCGTGCCTTGCGGG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGTACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 1 945-4424 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXIQ01000087.1 Micromonospora endophytica (Xie et al. 2001) Li et al. 2019 strain JCM 18317 87, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================== ================== 945 37 100.0 37 ..................................... CTGCGGGGAACATCGCCGTGCAGGTGACGCCGTTGAC 1019 37 100.0 37 ..................................... CGGCCTTGCCGACGTCGTACCCGAGCCGGTTGAGCCG 1093 37 100.0 36 ..................................... GTCCTCACCTGACCAGGCGTGTTCCTCCCGGTAGTC 1166 37 100.0 35 ..................................... TTGTTGCAGCCCCACGCGCAGACCAACCCGATGGA 1238 37 100.0 36 ..................................... GGTGCCGGTAACCGACTACAGCCGGCGTCGTGACCC 1311 37 100.0 37 ..................................... TCCGGTCCATGTAGTGGCCGTCGAGCGGACCCGGGTC 1385 37 100.0 36 ..................................... GACGTACAAGCGGGCCAGCACGACGACGGTGCGCGT 1458 37 100.0 39 ..................................... CCTCGACGACCGGCTCTACACCGACGTCGAACTCGACCT 1534 37 100.0 34 ..................................... CGGCGATGGCTGGGCCGGTGGTGATCTTCCCGCC 1605 37 100.0 36 ..................................... GCGGGTCTTCTTCACCAAGATCCCGCCCCACCCGAA 1678 37 100.0 36 ..................................... CTGCTCCACCGTGCTGGGTGGCCGCGCGCCGCCCAC 1751 37 100.0 37 ..................................... GGTCGACCAGCTCGTCCGCGATCCGGTCGAGCCCGTT 1825 37 100.0 37 ..................................... ACGGCACGAGCGGCATCACCGCGACCGCGAGCTGCAC 1899 37 100.0 35 ..................................... TCGGTCAGTGTGCGGTCGCCGATCTCCAGCGCGGT 1971 37 100.0 37 ..................................... TGGGCAGCGCTTCCAGGTCGGCCAGGGAGTGGGTGAT 2045 37 100.0 36 ..................................... CCGCGCGCCGCATTCCTCGCTGACGGTGCGCGCCCG 2118 37 100.0 50 ..................................... TTGTGCTCCCGGATCGTCTTCCGGAACGCGCCACGGGCCGTCCGCTCCAG 2205 37 100.0 36 ..................................... GGTCGCGGTGGCGGCCAGCAACGGCGGCAAAACCTT 2278 37 100.0 35 ..................................... TAGGGTCCACCGTTGGATTGGCAGGCAACGAACGG 2350 37 100.0 35 ..................................... TCGTCCAGGGCCGTCGATCCGGCTGCGCACGATCA 2422 37 100.0 35 ..................................... CCGGACCGCCTCGCCACCGACCCGCGCCATGAACG 2494 37 100.0 35 ..................................... AGCCCCGCCGAGGCCGAGCACATCCAGCGGCAGTG 2566 37 100.0 37 ..................................... TGCAGACCGGCCGACTGCACGAAGACGGAGTGACCCG 2640 37 100.0 35 ..................................... TTGGGACCGAAAGGCGAGAGAGGCAGTCGCTAAGA 2712 37 100.0 37 ..................................... ACGCAGTCTTGCTGCCGCCGCCACGCAACGGGGTGAT 2786 37 100.0 35 ..................................... TTCGCCGTGTCCCCGGCCGCCCACAGCCTGTATAT 2858 37 100.0 34 ..................................... CCGCCGGCTGGCACGCCCTGTACGACCCCGACGG 2929 37 100.0 36 ..................................... CCGCCCACCCTGGCGTGCGACGGCACCCAGGCCCAG 3002 37 100.0 36 ..................................... GCATCGGCTGCGTCACCGGACCTCACCGCCCTGGGC 3075 37 100.0 37 ..................................... TCGATCGACAGGAGAAGGGATCTAAGGGTGGCAAGTA 3149 37 100.0 38 ..................................... TGTCGGACGGCACCCCGCCGACCGCGCCCAACCCGAAC 3224 37 100.0 38 ..................................... TACGTGGCGGCCTCGATGAGCCCCTCGCCGCCCCGGGT 3299 37 100.0 37 ..................................... TCCCCATCGCCATCCACGACGGCCGCACCCAAACCTG 3373 37 100.0 35 ..................................... TTGCGGGTCTCGTAATGATTGCTGAGGTCAGTAAC 3445 37 100.0 35 ..................................... GCGCGGCCGGACCGGGGCCGCGTCGCCACATGAAG 3517 37 100.0 35 ..................................... GTGACGCTGCGAGTCGAGATGGCCCGCCGGCTCAT 3589 37 100.0 37 ..................................... CCGAGTTGTTCGGCCCGAAGTCATGATCGTCGTGCAT 3663 37 100.0 34 ..................................... TCGTCGACGTCGTGCTCCCGCACGGGCGCGACTG 3734 37 100.0 36 ..................................... TCCGACGGCGTACGCGGCTGCCGACAGCGCATTGAG 3807 37 100.0 36 ..................................... TGTCGTACCGAGGGTCTGCCCCGACACGGTGAGGGT 3880 37 100.0 38 ..................................... CCGGTACCGACGGACAGGGCCATCGTGGCCAGCTCCGG 3955 37 100.0 38 ..................................... GCCCATGGGTCGAGCTTGCGGACCTGGCAGAAGTGGAT 4030 37 100.0 33 ..................................... CCGCAAGCGCGGCGAGACACCCGCCGCGTTTAT 4100 37 100.0 35 ..................................... ACCCGACCCCGGAGCCGGACCCGGTCAAGCCGTGA 4172 37 97.3 36 ....................................C GCCACCACCGCCGCGCTACCGGCAGCCGACGAGCCG 4245 37 100.0 35 ..................................... CCGGGCTGCTCTCCACCGGCCGCGCCACCGGCAAG 4317 37 97.3 34 ....................................T AGATCTGCACCTGCGGCACCAGCGGATCAGCAGG 4388 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================================== ================== 48 37 99.9 36 GTTGAGATCCTCGCCGACGGCGAACCGCCAGCGCCGG # Left flank : GGATCCTGCTGCTCACCCATCCCGACCGGCTACCACCCGAGCAGACCCGCAACCTACACGACGTCCAAGCGGCATGCCCGCACCTGACCGCTGCCGGCCAGCATGTGCGCGCCTTCGCCAAGATGTTGACCAACCTCACCGGCCTACAGCATCTATCCGAGTGGATCGACAACGTTCGGGCGGACGACCTTCCCCACCTGCGGCAGTTCGCCGACGGACTCCGAACCGACTACGACGCCATCCTCGCCGGCCTCTCCACACCGTGGAGCTCCGGCCAGGTCGAAGGACAGAACACCCGGGCCAAGCTGATCAAACGCCTCGGCTACGGCCGCGCGAACTTCGACCTGCTCCGCAAACGGATCCTGCTTCAAGCGTGGACATCGCCACAAGATCAGCGACAGAGCCCGCTCCCGCGTACCTACCTGTGCACTCGGGCCTGTACGCCGACACGAACCGCCAGCGCCGGCCCCCACGGTGAGCTTGCCGGCCCGCGGGTCGAT # Right flank : GCTTGTTGACCTGCGGGAAGACGAATCTGAGCGTGATTGCCGCAGCAACAAGCTATTGGAATGCCCCTTTCGCTCCCGTTTTTGCCTCGGAACCTAGCGCTCAGATTCGTCGAACTTGAGGTTCCTAGATCATCTAGAGTATGTGGTCACCGTGGTGTGGCGCGAGGCGGGCGGCGCCGAGACATTCCACGGCTCGCAGGCTGCCGGCCGTCAGTCGGTATAGCCGGATGCTGTCTGCCTGGGCATCGATGATATCGATGAGTTGCTGTCGAAGGCTTGGCAGTTGGGCGGCGGTGCACGTGACTTCGAAGACGGACTTCTGCACCCGTATGCCGTATCCCTCGCAGACTTTCGCGACCCGCCGTAGTCGGCGCTCTCCCTGCTTGGTGGTGGTGTCCACGTCGTAGGTGATCAGGTATTCCATCAGGCCGGGCTCCACGGCAGATACCGTGGCGTGTCGCCGCGCAGGTGTCGGGCGAGCAGCCGGGCTTGGATGACGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAGATCCTCGCCGACGGCGAACCGCCAGCGCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA //