Array 1 94638-95642 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXMU01000005.1 Salmonella enterica subsp. enterica serovar Muenchen strain BCW_1599 NODE_5_length_221734_cov_0.356875, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 94638 29 100.0 32 ............................. GTTGCACGCATTCCAGTGTGGTTTAAAAAACA 94699 29 100.0 32 ............................. AACAACCCGCTAGTATTACAACGACTAAAAGT 94760 29 100.0 32 ............................. CGGGCGTACACCAGAACGGCTATTCAGGCACG 94821 29 100.0 32 ............................. GCGCAGTATCAGGGAACGGCCGTTATTACGGT 94882 29 100.0 32 ............................. GAGCGTTTAAAAATGCTCGATACGCTCCAGCA 94943 29 100.0 32 ............................. ATTCTTGACTGGCTCGATACGCTCGCATCCAT 95004 29 100.0 32 ............................. ATTCTTGACTGGCTCGATACGCTCGCATCCAT 95065 29 96.6 32 ................A............ TCACAGTTGAGTTTTGCCGAATTTTTCAACAC 95126 29 100.0 32 ............................. GCCGGACTCAACGGCGAGAACGTCGGGGACTT 95187 29 100.0 32 ............................. CAGACTGTGGATCTCAATCGGCCCGGGCAACT 95248 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 95309 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 95370 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 95431 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 95492 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 95554 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 95615 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTAGTGCTGGTAAAAAGTAGTTTATAAACAATTATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 111911-113831 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXMU01000005.1 Salmonella enterica subsp. enterica serovar Muenchen strain BCW_1599 NODE_5_length_221734_cov_0.356875, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 111911 29 100.0 32 ............................. CCCTCTTTCGCCGCTACCGCAGCTAACAAGAT 111972 29 100.0 32 ............................. ATTTTCATCGCCAGACCAGGATCGGTGGGGTT 112033 29 100.0 32 ............................. AAAAATTCGGCGCCAGCATCGCTGCGGATACT 112094 29 100.0 32 ............................. GCTGGCGGTGTACTCATCGCTTTGCACGGTTC 112155 29 100.0 32 ............................. GAACGCACGTCGCACAATACGACGGTTAAAAA 112216 29 100.0 32 ............................. CGCGCCACGGGTAAGACCTGGGAAGAGACGAT 112277 29 100.0 32 ............................. CTCAAGTAAACGTTAGCACCACGAATATAACC 112338 29 100.0 32 ............................. GGCATTGCGTGGTATCGGGTTTGCTAATATTT 112399 29 100.0 32 ............................. GCGCCCGTCGGGGGAAGCAAGGCGGACGGGAC 112460 29 100.0 32 ............................. TAGTCCATAGCCTCAGCCCGGCTTGTCATCCT 112521 29 100.0 32 ............................. ATTACGAGACATTGTGGAAATCCATCTACGGC 112582 29 100.0 32 ............................. AGGCGTGCATCAATTGCTATAAAGCCGTAGTC 112643 29 100.0 32 ............................. ACTGGTTGAGAAGATCCGCCGCAGAATCAGCG 112704 29 100.0 32 ............................. ATCACATCACGCAGATATTATCTCATTACAGC 112765 29 100.0 32 ............................. CGCCTACGCCTGGGAGCTAATCCCCGACAGCA 112826 29 100.0 32 ............................. CCCGTTCCACGGCGAGAAAACCCCGTCCTGCG 112887 29 100.0 32 ............................. CCGTTGACGGCGAGCGCAGACCTCGGAAATAA 112948 29 96.6 32 ............................T TGCCATAGAAGAATCTGACCCTGATAACTGGC 113009 29 100.0 32 ............................. GCGTCCTCGCCAGCGTCAGCCGGGTAATACAA 113070 29 100.0 32 ............................. GCCTGCGTGAAAAACAGGTTCATCAGGATGCC 113131 29 100.0 32 ............................. CTCCTTGAGCAGGGGAAACCCTGCCTTTTCCA 113192 29 100.0 32 ............................. GGCTGAGAAGATCGGCGGGCAAACTGCCTATG 113253 29 100.0 32 ............................. TTTATTCGCCGAAAGAGGGCGACATAGTTATT 113314 29 100.0 32 ............................. AGCCAGGCGTTATCTTCTGGCGTTCTTAGCGG 113375 29 100.0 32 ............................. GTGACAACGGTCCCGGCGCTGGAAAAGGTGAA 113436 29 100.0 32 ............................. CAAAAATGATTACTATAATCCCATGTTGAACA 113497 29 100.0 32 ............................. CTTCATCTCGCAGTACGTAAACGCCTGCATCA 113558 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 113619 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 113680 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 113741 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 113802 29 96.6 0 A............................ | A [113828] ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGTGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //