Array 1 953830-953232 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001980.1 Dickeya zeae NCPPB 3531 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 953829 37 100.0 33 ..................................... AATTACGTGTCAGGATTGTGTCTTTAGCTAAAG 953759 37 100.0 33 ..................................... TAATACCACGATATCCTTTAGGATTTACTCCTG 953689 37 100.0 33 ..................................... ATCAGGCTCAATAAATAAATCATCGAATCCTTT 953619 37 100.0 34 ..................................... TAGAGGGCTCTTAAGCGGCGGTGTTGACGTTGTT 953548 37 94.6 33 ............T.........C.............. TCAGGTTTTCCCGTAATATCACAAACGGGTTTT 953478 37 97.3 32 ............T........................ CGGCTTCCGCCAAAATTTTGATCGATGTAATC 953409 37 97.3 32 ..............................C...... TGTGTGTGATCGTCATTCATAAAAAACTCTAA 953340 37 100.0 35 ..................................... CCTGGATTTAGCATGAAGATCAGATTTCGTTTAAC 953268 37 91.9 0 ...............................A..A.A | ========== ====== ====== ====== ===================================== =================================== ================== 9 37 97.9 33 GTCCTTATGGACCTGCCCTGACTGAAGGGATTAAGAC # Left flank : AATACTCAAAAAATAACTCTCATTCACCTCTCCCATCGTTCCATTATGCGTAATCGTTCGGGATAAATTTAATTGAGAGGCCAGTAGTTGCTGTTGAAGATTAAAAGATTTTTTTAAAAATTCTCTGCCATTCATTTTAGATAATTCTTTTGCCTGATTCGTCATATTCCTTTCCTGATTTTAATTTTATGAATATCTACCCGACGGGAAAGTATATCGCTTATCCATAAATTTTCCTGTGCTATCAACCCCCCGTTTAGGCACAGATTTTGCTTATTTTCGCCACTGCGCCCGTCGCTCCCCGGCGGGCCACTTTTTCGAACAAAAAACAGGCAAAAATAAAACCATACCGATAACAACTCACATGACATCAAGCTATTAGCACCACAACACATGCACTGGCACCGTTTTTGCTTAAAAACGTGTTTTTTGAGGCGGGAAAAACAGAAAAAAGCGCACAGCCTTGATCAAATAAAAACAATGGGTTATAAATTTTTATT # Right flank : ACCCCTCAATTTTGAGGGGTTTTTCCATGGTGTTTTTATACTTAGTCAATTTATGCCGCTATCTTGGGTCTCAATGGAATCGGCATCACCTCTCCCCCTCCTTCTCTCCCTTCAGCTCTGACCACATCAAACTGCACCCTCACCCACTCGATGGCGTCTGCCACCACTTCGTGGTAGTCGTAACTGGGTATGCTATCCAGGTTGTCAACGTCGACATCGGCCAGGAACGACTCCATCTCGATACCGTTATTGTAAAATACCGTTGCCTGTACACAGACTGGCGTAACGATACCTTCCGCCACCTTATCGATATACTGCACAAGATAGTCGGGGTCGAACTCGCATATATCTATCTCCGATAATTTCTGCGGTCGGCACATTACATCAATGTGGCCAATCGAGAGCTGAAACCGCCGGATACGTCGTTCGTCAAAGTTGCAGCGGTGGAAGAACCGGTTGAGCTGGTGATAACAATGCCTGCTGATGTCCGCCAGTTTTTC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTTATGGACCTGCCCTGACTGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.90,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 963026-962288 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001980.1 Dickeya zeae NCPPB 3531 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 963025 37 100.0 32 ..................................... GCGGTGCAGCGTGCCGTCAGCGACAATTTCAT 962956 37 100.0 33 ..................................... CCATGTAAATGGCCCGTTCGTGACGGTGGTATT 962886 37 100.0 32 ..................................... TTAAACGCCGGGTGTTTGCGGTAGGCTTGCTG 962817 37 100.0 33 ..................................... GATAGCCATCTGCACCAGCGCCTTGAAAGCCGA 962747 37 100.0 32 ..................................... TTTATTACTTCGGACATAATGCGGTCTTTTTC 962678 37 100.0 34 ..................................... TTGTACGCATCGCCAAATCCAAACTCCGGGTCAA 962607 37 100.0 32 ..................................... CAAGGTGTTGTTCGGGTTAATCGGCACGAAAA 962538 37 100.0 35 ..................................... ATTAAGTTAGCCAGCTTTTGAAAAGTAGGGTCTGC 962466 37 100.0 34 ..................................... CCAAATTTTTCAACGCGATTGGATGATGAACCTT 962395 37 83.8 33 ....T..T....TCA....................G. ACTTCCTCCTCTTCTTCAACTTCTTCCTCTCCT 962325 37 81.1 0 ....T..T......C.................TTCT. | T [962312] ========== ====== ====== ====== ===================================== =================================== ================== 11 37 96.8 33 GTCCGTAAGGACATTCCCTGACTGAAGGGATTAAGAC # Left flank : GGCTGCGAAAAATGCAGCGACGCTGCGCGTCACAAGGCTGGGCATTGCAAAAGTCGCTTTTTTTATTTGCGCTTACCGTACCGGAACGCCAGGCTCTATGCCGTGAATTACAACGTCTGATTAACCCAGAGGAAGACCGTCTGCTTTGCCTGCCGTTTGACACCCCACCCGGCAGTTTTCACCTTGGCCCTCGATCGGACTACTTACTCATTCACTCCGACCCGCGTCTGAATGATTTTGTGTTTTAAGCACACAACCGGCACGTAATTTGCTTATTTTCCCCTCCGCGCCCATCGCTCCCCAGTGGGCCGCTTTTACGTACAAAAAACCAGCAAAAATAAAATAACGCTCACCACAATTCACGCCACATCAAGCCATTAGCGCCACGGCGTTTGTAGTGGCACTACTTTTGCTTAAAAACGTGTTTTTTGCGGCGGAAAAAACAGAAAAAAACGCGTTTGCTTGCTCAAATAAAAACAATGAGTTATACATTTTCATTT # Right flank : TCCACCGGGCGGTTTTCCGCCCATTCTCAAATTTCCTTTATCCGTTGGTAGGCATTCCGGCTGAAATTTCGTATGGTTAAGCCCGTTACGGGCGGGCAACGTGGCGCGCCCCGTTTTGGCACAAGGAGATGTCAATGAACTGGCTTGCCGCCTCTTGCCATGTGGCTGCCTTTGCGCTGTTACATAACCTGAAACCGCTGGCGCAGCGTGCCGGCATTCAGGACTTCCCGTCACCGGCACTGGCAAACAAACTGTTTGCGCCGCTACCGGAAAGCCTCTCAAACCGTGCGGATCTGCACGAAAATACATTAACCCTGTTATTGGATTTCGCCGCCAGACTGGCACGCGGCGTGCCGGATACGCCCGTAAGCCGTGGCGAAACCGGGCTGATACCGCTCACCCACCTGTTAGCGGACGATAACCACAGCGCCCCGGCGGCACGCTGTTACAGCCCGCTGGCCCCGCTGGGGGTCGATTCGCTGATGCCGGTGACGGCCGCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGTAAGGACATTCCCTGACTGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.10,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 3 3736657-3737166 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001980.1 Dickeya zeae NCPPB 3531 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3736657 28 100.0 32 ............................ CGCCCAGTTCGTCAATTAACCGTTTCAGGTCT 3736717 28 100.0 32 ............................ GTAGGGATGGTGATCGCATCTTGGCAGCCGGA 3736777 28 100.0 32 ............................ AGCAACGGGTTGAGATTGTGCGGATACGTCTA 3736837 28 100.0 32 ............................ TGTTGATGACGCGCACTATCGGATATACCGGA 3736897 28 100.0 32 ............................ TGTCTATCGATCAGATAAAGATGGTCAGCGAA 3736957 28 100.0 32 ............................ AGCAGTAGCTAGATTTGTTGTCATCACAGACA 3737017 28 92.9 32 ...........CA............... AACGGCCCGACTCGCGGTACATGTATGTGAAT 3737077 28 92.9 32 ...........CA............... CACAGCGTGACAGCAATGATCGACTGAAGTAC 3737137 28 78.6 0 ............AC.........G.TGG | GG [3737158] ========== ====== ====== ====== ============================ ================================ ================== 9 28 96.0 32 GTGAACTGCCGTGTAGGCAGCTTAGAAA # Left flank : CAGAAATCCCGCCCATGGCGATATCGCACTGGTCGGACTGAAAATCTGGCATCAGGGTTTTCCAGCTGGTTTTCACCCACTCCACCTTCACGCCCAGGCTTTTCGCCAGCGACTGCGCCATCGCAATATCGATACCTTCGTAACTACCGTCCGCCCGCAGCGAGGTATACGGCTTATAGTCCCCGGTGGTACAGACCTTCAGCACCCCGCGTTCCTGAACCTGATCAAGATGAGAAGCCGCGCTGGCACTACCGGCCAGCCCCAATAACAACATCAATGAGAACCGTTTTTTCATGAAATTTCCCTGCACGTCACGCCTGTCTGGCAAAACGTCACTGTAGCACGCCATATTCACCAATATCGACGTTGACCCTTTTTTTTCGTCCCGTTATAACTCGTTGATTTTCAATGATGATAAAGGTGGGTTTTAAAAAAGGGTTTCACGACCAAAAACACGACTTTCCCTTTCAACATCAAGCCATAAGCGATAAATTGCTACA # Right flank : GGTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGCACGGCATGGATGCCGTGCAAGCCCATTCCGCGTAAGGAACGCGTAATGGGCGGTCCGAATAGCGAAGGCGAACGCCGAAGGCACCGCGTTAGCGGCGTAGTTTAGACACTCAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAAGCGACACGGTCTATCCCGCACGAAACCACCCACCGCCCCCGCATACATTCGACAAACACATTCGCCAGCAGCACCCCGGCTGTTTACCAACAGCCCCTAACACGTTACTCCACCGTCAACACCGCTACCGCCTTTTTACGCTGTTTGATGGCATAACCTGCCCCCAGCGCCAGCAGCCAGAACGGAATCAGCCACACGGAAATCTGAATGCCCGGCGTCATCGCCATGATCACCAGAATCCCGGCCAAAAACAGCAGGCACAGAACGTTGGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : GTGAACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTAACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 3743264-3742215 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001980.1 Dickeya zeae NCPPB 3531 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3743263 28 100.0 32 ............................ AAAGGCGTTTCTGGCCCACTGTCAAGCGCATC 3743203 28 100.0 32 ............................ GGTCAGCAGCAACGAACACCGGCTACCAGTCA 3743143 28 100.0 32 ............................ TGAGCGCTGTAGTTGAATGACTCGACAATGTC 3743083 28 100.0 32 ............................ TCTTTTGTTGCGTTTCTTCCGCATTGACTTAA 3743023 28 100.0 32 ............................ AAGTTCCAACCATTAGAATGGTTGACAATATT 3742963 28 92.9 32 ...........CA............... ATGTTGATAGTATCCGTCATTCTTTTCAGTGT 3742903 28 89.3 32 ...........CA..A............ ATAATTTATCTCACAGGTTTGGTTTCACTTAT 3742843 28 92.9 32 ...........CA............... TGCGCATTCACCACAACGGAAAGAGCACTGGC 3742783 28 92.9 32 ...........CA............... AGGTAGGCATTGCCGAACACCAGATAATCCTG 3742723 28 92.9 32 ...........CA............... ATACTAAATTCCTTCAAGGGTGTCACCGGCAC 3742663 28 89.3 32 ...........CAC.............. AGCAGCTTTGACCGCCTGAGCACAGCCAGTAA 3742603 28 89.3 32 ...........CAC.............. CGGACTATCGGCTGATTCAGCGGGCTCCTGAT 3742543 28 92.9 32 ...........CA............... AGAGCGGCGGCAGTCACGTATACCGGGTTAAT 3742483 28 100.0 32 ............................ GTACCAGCCTCTAAGCAAAAATGGCATGCCGT 3742423 28 100.0 32 ............................ CGTACATGTCTTTGCAGGAGGCTAGAGACAGA 3742363 28 89.3 32 ...........CAC.............. TTATGACGACACGGCCAGTCTGAACGTCCTGA 3742303 28 89.3 32 ...........CAC.............. GCACAGGTAAAAGGGCCTTTATCGCCAGAAAC 3742243 27 78.6 0 ...........TAC.........-..CG | GG [3742220] ========== ====== ====== ====== ============================ ================================ ================== 18 28 93.9 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : AGGTACTGACGGCACTGGAACAAACCGGCTGGCGCACAGGGCTACGCGACTATAGCACCATCACCGATGTATTAACGGTGCCAACTGGTGCGCAGTACCGCACCGTGCGCCGGGTGCAGGTGAAAAGCAGCGCTGAGCGCCTGCGCCGCCGGGCGGTGAGCAAAGGTTGGCTGACCGCGGATGAAGCCGCCGCCCGCATTCCCTATGCGGTGGAAAAACGCACCTCGCTGCCGTATCTACCGCTGCGTAGCCTTTCCAACGGACAAACGTTTTTACTGTTTGTCGAGCACGGCCCGCTACAGGACAAACCGGTCGTCGGTACCTTCTCCAGCTACGGTTTAAGCGCGACCGCCACCATCCCGTGGTTTTGACCCTTTTTTTGCGGCCAGTTGTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAGGGTTTTCCCGGAAAAACGGCGATTTTTCTTTAACAATCAGGCGATAAGCGATTATTCGCTACA # Right flank : GGTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGAGCGGCATGGATGCCGCGAAAGCCTGTGCCGTGCATGGAGCACGTCATAGGCGGTCCGAATAGCGAAGGCGAACGCCGAAGGCACCGCGTCAGCGGCGTAGTTTAGCCATCAAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAAGCGACGCGGTTTATCCCGCACGAAACCACTCACTTGCCTGATATATATCGCTAATCAATAACAAAACCCCTCGCTGTTTTTCAACAGCCCTATTCCTGCACAGGAATAAAAAAATCCCCCAACCGTTACCGGCTGGGGGAAAGGGCGTAAAAAAGTGAAAGGAATAACTTACTGTACGGCGGCGAAGGCAGCAGCGACGCGCTGTACGTTGTGATGGTTTAACCCGGCGATGCAGACACGGCCGCTGGCGATGAGATACACACCGAACTCTT # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 3752680-3754090 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001980.1 Dickeya zeae NCPPB 3531 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3752680 28 100.0 32 ............................ CGGTTAATGCTGGGCTGGCAAGTGGGGCCAGC 3752740 28 100.0 32 ............................ TTTATGTCATGAAAATGGCACGTCAACTCATA 3752800 28 100.0 32 ............................ GGGATATGACGATAGGCATAACGTTTGAATTT 3752860 28 100.0 32 ............................ TCTTTCGTAAAAACAAACTCCCCCCGGTGTAC 3752920 28 100.0 32 ............................ TTCCAAATGTCATCACGTCACGTTTGGAGCTA 3752980 28 100.0 32 ............................ CGATTGCGCGCCAGAGATAACGACCTCCATTT 3753040 28 100.0 32 ............................ CATTTTAATACCCTATCGCGATATATGTTATC 3753100 28 100.0 32 ............................ ATACTCTGACGAAGAGGCCAATACATGGTGGT 3753160 28 100.0 32 ............................ GTGTATGACAACACGAATTATGAGGCGCCCTA 3753220 28 100.0 32 ............................ ATCCTCCCGCATTCCATCTATTGACAATAGAT 3753280 28 100.0 32 ............................ CACGGCTGGCGCAGTGAAATCGCTTTCATGCC 3753340 28 100.0 32 ............................ CTCGGTGCCGTAAAGCTGCGCCAGCAGTTCAG 3753400 28 92.9 32 ...........GA............... ATAAACACAGATCCAGATGGAATGCGCTGCGA 3753460 28 92.9 32 ...........GA............... TGACGGATAGGCACCGACAGCGCACTGATATC 3753520 28 92.9 32 ...........GA............... GGTCTGGTCAAGCCCACGGAGCGCATGACCGT 3753580 28 92.9 33 ...........GA............... TCCAGGTGGGTTTAGTATCAGAGACTGGGTTGA 3753641 28 92.9 32 ...........GA............... TGAACCGGCTTTCTGTCGGCGCAGTGATTTAT 3753701 28 92.9 33 ...........GA............... CCTGTGCCGCCAAAAAGCATAGCCCCTGTGCCG 3753762 28 92.9 32 ...........GA............... CACTGCGATACGCCAACGATATCCCGACCGGA 3753822 28 92.9 32 ...........GA............... CATACGCCCGAATAGGAGCGTGAGAATGGTTC 3753882 28 100.0 32 ............................ ATCGCATTAACAACACGGCTCCAGCCATCAAT 3753942 28 100.0 32 ............................ GGTTTGTGCGCCCATACTGCCGCTGGCGTCAT 3754002 28 100.0 32 ............................ CAGATAAGCATCGCCAGCGCGGCTTTCAGCAG 3754062 27 78.6 0 ...........CAC.........-..CG | GC [3754081] ========== ====== ====== ====== ============================ ================================= ================== 24 28 96.7 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : GTGACCGAAGTACCGGTGCCAAGCATCACCACGCTGGTATTAGCAATCGGGATATTCCAGTACAACGACTGATTCCCTTCTTCGGTGACATATTCCACCCGCCCGCCATTCACCAAAATACGGCAATGCTGGAGGTAATAAATATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGACGGGCTGAATACGTTATCCATAAAACCGTTTCTCTGTGGTGGTGATAAAACAACCCCATCCGCGTAATAAAACGCAGACTAATAATTCATTGAAAAACACGTAATACACTGGAAAGTAACGAGAATCAGCCTAGCACAACCCAAACCAGAAAATGAATGACGCCAGAAACACTTTTCCCGCTTTAATACCCTTTTTTTCAGCCGTCTTTTTCGGTACTGAAAAATCAATAAGTTACCGACAACCAAAAAAAAAGGGTCTGACAGCGAAAATCGACAATTGCAGGCTGAAATACAACGGGTTAGAGTCAACGGGCTACG # Right flank : GGGTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGAGCGGCATGGATGCCGCGAAAGCCTGTGCCGTGCATGGAGCACGTCACAGGCGGTCCGAATAGCGAAGGCGAACGCCGAAGGCACCGCGTCAGCGGCGTAGTTTAGCCATCAAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAAGCGACTCGGTTTATCCCGCACGAAACCCTTCACGCTTTCAGGCACGCCTTCGGTGTCGGCGTGATGCGGTTAATCACGCACGAAACCCTCACTCTACCGATAATCCTCACTATCTAACGCCCGGGAAAGGGCAACCTGTCAGAACGACGCCCAATCACTATTGTTACCCGCCATGGCAGCCCGCTTTTCCGGCAACGCCGGAGATAGCACCGCTGGCTGACGGGCTGGCGGCGTTGTGCCACTGTTGCCCTGCGTCGTCAGGCGAAACGCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //