Array 1 8650-9775 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMXU010000025.1 Escherichia coli strain 18-47-41 25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8650 29 100.0 32 ............................. ATTACATCCGGCAATATCATGCTGATGCCTCG 8711 29 100.0 32 ............................. GGCGGGCCGTTGGCTAAACGCTGCGATCTGCC 8772 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 8833 29 100.0 32 ............................. AAGGTCGTAAACATTGAAGACGCGATCGCGCG 8894 29 100.0 32 ............................. TAACAGGAATGTTTACGCTGGCTGAGGCTGAG 8955 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 9016 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 9077 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 9138 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 9199 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 9260 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGTAATCCGT 9321 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 9382 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 9443 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 9503 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 9564 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 9625 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 9686 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 9747 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1073-251 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMXU010000310.1 Escherichia coli strain 18-47-41 310, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1072 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 1011 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 950 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 889 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 828 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 767 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 706 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 645 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 584 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 523 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 462 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 401 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 340 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 279 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGATTGTGACTGGCTTAAAAATTCATTAATTAATAATAGGTTATGTTTAG # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //