Array 1 65772-66579 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXCP01000018.1 Pseudomonas aeruginosa strain 3141 IPC1105_18.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 65772 28 100.0 32 ............................ AGTAGGGCATCGGCTGGTTCCAGGCAAGCAGC 65832 28 100.0 32 ............................ TATCAGTGATGAGCAGTTGGCGGAGGTTGAGG 65892 28 100.0 32 ............................ TACATGATGCGACCCGAATTTCGCATTCGAAA 65952 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 66012 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 66072 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 66132 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 66192 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 66252 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 66312 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 66372 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 66432 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 66492 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 66552 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 14 28 97.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 77472-75104 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXCP01000018.1 Pseudomonas aeruginosa strain 3141 IPC1105_18.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 77471 28 100.0 32 ............................ ATAGACCTGAAAGAGGCCGCCCAAGTCCTGAT 77411 28 100.0 32 ............................ TCGGTCGGGCTGCGCCTAACGTAACGTCTGCA 77351 28 100.0 32 ............................ AGTCGATGAACATGAAAATCCCTGTCAATATC 77291 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 77231 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 77171 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 77111 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 77051 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 76991 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 76931 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 76871 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 76811 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 76751 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 76691 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 76631 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 76571 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 76511 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 76451 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 76391 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 76331 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 76271 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 76211 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 76151 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 76091 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 76031 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 75971 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 75911 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 75851 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 75791 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 75731 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 75671 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 75611 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 75551 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 75491 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 75431 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 75371 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 75311 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 75251 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 75191 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 75131 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 40 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //