Array 1 413565-415484 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZAJ01000001.1 Salmonella enterica strain BCW_6128 NODE_1_length_656423_cov_4.43486, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 413565 29 100.0 32 ............................. AAACTGTATATAATGAGATTATGTCTCAATTA 413626 29 100.0 32 ............................. AAACGTCTGGAAATTTACATAAATTAATGCAA 413687 29 100.0 32 ............................. GAGTTAAATTAATGAGACTATCCGCGTTTAAT 413748 29 100.0 32 ............................. ATTTATAAATTCAGTAGTAGAAAATAATTCAT 413809 29 100.0 32 ............................. ATGGAACTGTTGATAAAACTATAGACGACGAA 413870 29 100.0 32 ............................. ATCAACCCTCAAATGTGGTTATTTGCGCAGGC 413931 29 100.0 32 ............................. GGCGCGCCTGCGCCCTCTGGGACTCGTGTCAA 413992 29 100.0 32 ............................. GTTCGGATATAGAATATAATTTAAAATCGATG 414053 29 100.0 32 ............................. CATTACAGTCAGCTACATTAAACAATGTTCGT 414114 29 100.0 32 ............................. GGTAATCATAATCAGATGCATCCACATATTTT 414175 29 100.0 32 ............................. AACGTCTTTATGCGGTTTTGTGTCGCCGGAAA 414236 29 100.0 33 ............................. AATTCTCGTTTACACACACATCACCGGCTACGC 414298 29 100.0 32 ............................. TGTGATTTACCGCTTTCCTTATTAATCGTTCG 414359 29 96.6 32 ............................T GGCGTAATGTTTCCATTGCAGAAACTGCGGGC 414420 29 100.0 32 ............................. TTACGAATGAGAACCCATTTAGAGGTCGAATC 414481 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 414542 29 100.0 32 ............................. GTCTGGGATAATTCAGCGGGTACGGCGATATA 414603 29 100.0 32 ............................. CAGCGAAACCGGAATTAAACCCCGCGAACCTC 414664 29 100.0 32 ............................. GGTTTGTTATGCCTCTGACACCGTTTCAGCGC 414725 29 100.0 32 ............................. TATATTGCGGCGCAACAACTGAAAAACAGGCG 414786 29 100.0 32 ............................. TTGCCTTTAAAGTGGGTGTGAGCATGAGACAG 414847 29 100.0 32 ............................. TTCCGCCATGACCGTTTCAGCCTCCAGCTTTC 414908 29 100.0 32 ............................. ACCAGAAAATTTAACTATATCACCTTCGGACA 414969 29 100.0 32 ............................. GTCCGTTCGTCGGCAGGCGTGGTCAGGTCAGG 415030 29 100.0 32 ............................. CGAGATGTCGCGGTCACTGGCTTTAATCCAGC 415091 29 100.0 32 ............................. ACCGTCAGAACCCTCACACCACGCTTCGTGCT 415152 29 100.0 32 ............................. CAGTGATGAATGCAGCCGGTAACACGGCTGTG 415213 29 100.0 32 ............................. GAATCCCGATTCTCGGTGTTGGCGCCATCTAT 415274 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 415335 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 415396 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 415457 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================= ================== 32 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCACTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGTAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 432032-434137 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZAJ01000001.1 Salmonella enterica strain BCW_6128 NODE_1_length_656423_cov_4.43486, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 432032 29 100.0 32 ............................. TAATATCTATATACAATGAATTTAATAATGTT 432093 29 100.0 32 ............................. AATTCCCAGAATAAGAAACGTCTGGAAATTTA 432154 29 100.0 32 ............................. ATTATTATAATTGGATGTTACCATTATTTTGC 432215 29 100.0 32 ............................. GAGTTAAATTAATGAGACTATCCGCTTTTAAT 432276 29 100.0 32 ............................. TATCTGTATAAATTGTTACACCGTTTATAATT 432337 29 100.0 32 ............................. AAATCCAGATAATTTTACACCCCCTGCACCTC 432398 29 100.0 32 ............................. TTGATGTTGATATTATTTCATTTTCTGAAAAT 432459 29 100.0 32 ............................. GTTCTCGGCCGTGTAACATCTACCGCCCAGAA 432520 29 100.0 32 ............................. GGCTGGATTGTCAACGCCGCCAACATCAAAAA 432581 29 100.0 32 ............................. CGTCGATGACCCTACCAAATGGCGTAAATGCT 432642 29 100.0 32 ............................. CCGGATCCCCTATTCCGCGATGAGTACGCAAA 432703 29 100.0 33 ............................. CGGGGTTGCACCGAGTTAGTAGCATACTTGCGG 432765 29 100.0 32 ............................. GGGGAAAATTGCTGTGTGATATAGACGAATTG 432826 29 100.0 32 ............................. GCGGAAGCGCCAGGATACCCTGAAACGCTACC 432887 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAA 432948 29 100.0 32 ............................. TAAATACTCAATCATTAACCGAAGTTACGTTT 433009 29 100.0 33 ............................. TCGCAACCCGCCTTATTTAATTATTGAAGCGGC 433071 29 100.0 32 ............................. GAATATAGTTTCATCGTTATTTGTGACGTCAT 433132 29 100.0 32 ............................. GGTAAAGAGCCTAAATATTTTATATTAGATGA 433193 29 100.0 32 ............................. CGTAAATACCACTACTGGTTGATTGCATTTGC 433254 29 100.0 32 ............................. AATTATTAACATTATTTGTTGTCTGTTGTTTT 433315 29 100.0 32 ............................. GCGGCACCTACGTCTGTAAAGAGCTGGTTTAT 433376 29 100.0 32 ............................. AATGAACGGAAGATATGGAGCACAAAAATGAA 433437 29 100.0 32 ............................. GCTGAGTATGCTGCTGATTTTCCTGGTGTTAA 433498 29 100.0 32 ............................. TCGGGCAAAAAAAGCGTGTTCACCGCTGCGCC 433559 29 100.0 32 ............................. GTGCGTGTAGGGAATGATCAGCGTATCGGACA 433620 29 100.0 32 ............................. CAACTTTGGATCGTTTATATTCATCGATATCC 433681 29 100.0 32 ............................. CACCTGGTAAATATTTTTCTAATCAGTCGATA 433742 29 100.0 32 ............................. CCAGCTGACAACCTGGCGTTTGTGGTTCGTTA 433803 29 100.0 32 ............................. TTTTAGACATGGCAAACGCCGACAAGATGAGC 433864 29 100.0 32 ............................. TGCTGGACTGGTCAGAAATTGAGTTTGCAGCG 433925 29 100.0 32 ............................. ACGCCTTCGTAGCATACCAGCTTGCTTATAAA 433986 29 100.0 32 ............................. TTTTGGGCGGCCCTGGACACCCGACGCGGCTC 434047 29 100.0 32 ............................. TGCGGCCACGCCCGCGTAGCAGATAGCCGCCA 434108 29 100.0 0 ............................. | A [434135] ========== ====== ====== ====== ============================= ================================= ================== 35 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCATTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //