Array 1 249069-247251 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCUW01000029.1 Streptococcus oralis subsp. dentisani strain Y_5914_11 s_oralis_RS_5914_11_ID_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 249068 36 100.0 30 .................................... ACGAAGTTTACTTACTGAAGAAAGCTGTAC 249002 36 100.0 30 .................................... TATATTTTTTTCATTATCCAGCAACTAAGC 248936 36 100.0 30 .................................... ATTTATGAAGATCCATATACAATTTCACGT 248870 36 100.0 30 .................................... TTGGGATAGGAAACAAAATGGCGAAACTGT 248804 36 100.0 30 .................................... CTTTTTTGATAAAAAGGGTTGACTATTACC 248738 36 100.0 30 .................................... AGGAAGACCTTAAATATCGAATTGACTCAA 248672 36 100.0 30 .................................... GATAGACTTAGCTGAGATAAGGAAAGCAAC 248606 36 100.0 30 .................................... TTTTAGACAAGGAGAAGAATGTGCTTATTA 248540 36 100.0 30 .................................... AGTAGCATTTCCATCGCCACCTAAAATGTT 248474 36 100.0 30 .................................... AAACGAAAGGATTTTAGAAGATAATATGTT 248408 36 100.0 30 .................................... ATACCACGGGCAAGAATTGCAACGTCTACA 248342 36 100.0 30 .................................... AATAACTCATGTTTACAGGTCTGTTTGCCT 248276 36 100.0 30 .................................... CTTGTCATACTCGTACACAATTTCTATATG 248210 36 100.0 30 .................................... AATAGCTAACTTCCCTTTTGCGAAATTCTC 248144 36 100.0 30 .................................... TGTAGTAGAGGTTGAAAATCTTGTTTCTAA 248078 36 100.0 30 .................................... CAATCTGTTTTTGTTGTTTGAAAATAGTAT 248012 36 100.0 30 .................................... TTTTTCTTCTTCAGTTTCAAAAGCTGAATG 247946 36 100.0 30 .................................... AAGATAAAACGCAAGGATATAGAAGATTTC 247880 36 100.0 30 .................................... TATCTATAAAGTTGCCTTCTCAGCAGATAA 247814 36 100.0 30 .................................... CATACTGATTCGTCAGAAGAGTCATCGCAA 247748 36 100.0 30 .................................... TGTGTAATTTCTGCAAAAGTTTCATCGTTG 247682 36 100.0 30 .................................... ATTGAAGAGTCCGGAAAAGGATAAACCTAG 247616 36 100.0 30 .................................... AAGTCCCTGTTGTTTGACCTCTTACAGGGT 247550 36 100.0 30 .................................... AAGAACACGAAACGAAAATAAGAACAGTAA 247484 36 100.0 30 .................................... TTCAAGTTTCTTGCTATCTTCTTCAGTTGC 247418 36 100.0 30 .................................... AATATCAGGTTTGTTGAGGGAAGAACGTCA 247352 36 100.0 30 .................................... ATGATATTGATGATTTCTTAAGTATGGTTG 247286 36 91.7 0 .................................TCT | ========== ====== ====== ====== ==================================== ============================== ================== 28 36 99.7 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : ATCAACTCAATGACAAGCCCGAAGTCAAGTCCATGATTGAAAAGTTGGTTGCTACGATTACAGAATTGCTGGCATTTGAATGTTTGGAAAACGAGTTAGACCTAGAGTATGATGAAATTACCATTCTAGAGTTGATCGATGCACTTGGAGTCAAAGTTGAAACCCTGAGTGATACACCTTTTGAAAAGATGCTAGAAATTGTCCAGGTTTTTAAATATCTTTCGAAAAAGAAGCTCCTTGTTTTCATCAATGCATCCGCCTATCTATCAAAGGATGAGTTAGTAAATTTGATAGAGTATATCCAACTCAATCAACTAAGGGTTTTATTTGTCGAACCTCGGAAAGTCTATGATTTTCCACAGTATGTGCTGGATTCTGATTATTTCTTGAACCCTGAAAATATGGTATAATAAGAGTAACAATTGAAACCTGACGAGCTGAAGTCTGGCTGGGACGAATGGCGCGATTACGAAATTTCGTGAGAAAAATTTTTCTACGAG # Right flank : ACATAAAAAGCTACTCATTTTTTGAGTAGCTTTTTAACTATTCCAACCCTACACATAGCTCATTCCTTTATAGAAAAGGAAAACGGCTAGTGCGACAAAAAGTAGGATTGCTCCGATTCGCTGGCTGGTGCTGTACATTCTTCTCTCCCATTTAACTGGAAAGATGACTGCTAGCAAAGCCCCGCCTACTGCGCCACCGATATGCCCTGCTAGGCTGATTCCTGGAATCAGAACACTTCCAATGATATTTATCACGAAAAGAGTCAGGTAGGATTGTCCTAACTGCTGGATATAGGGGCTACGAGTTGCGTAGCGCAAAACGATAACCGCAGCAAATAGTCCATAGAGGGAGGTAGATGCTCCTGCTGCTAGGACTTTCGGTGTGAAAGTAAACACAAAGAGATTGCCCATCATTCCTGATAAGAGATAGAGAAAAAAGAACTGCTTGGATCCGAAAATCTCCTCCACCTGTCGTCCAAGAAAGTAGAGAGAAAGCATGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 155892-154888 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCUW01000026.1 Streptococcus oralis subsp. dentisani strain Y_5914_11 s_oralis_RS_5914_11_ID_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 155891 29 93.1 32 ..............C.............T ACACAAGATATTTCAAGTGCTGCAATCCTTAC 155830 29 100.0 32 ............................. TTGCTCGCATCACCATTATGTCGCTGATAAAT 155769 29 100.0 26 ............................. AATTTACAAATTATCGCAGTAGGCAC 155714 29 96.6 32 ............................T GGATTGAGTAAAGATCCCGTTATCGATGTGAA 155653 29 96.6 33 ............................T AAATTACAAGACTAAATCATTAAAATTTATTAA 155591 29 100.0 32 ............................. TGGAGTAACTGAAGGCTCTGTTGGCTGAACTG 155530 29 89.7 32 .............TC.............T ATCAGCATGACTGACCGTGACCTTGATACGTT 155469 29 89.7 32 .............TC....A......... GGTTTAAAAGGGGTTATATTTGCCATCGATGA 155408 29 93.1 32 .............TC.............. GGATAAGGCATGGCAATGATGTCTCCGTTTGA 155347 29 93.1 33 ..............C.............G TAGTTAAAATAGAACTCATAAAAGGCTAACCTG 155285 29 96.6 32 ..............C.............. AGGCAAACACAGATGCTTGTATTCGCTTTATG 155224 29 100.0 32 ............................. GGTCTCGAAGACCTGAAGAAAGCACGCAAGAA 155163 29 89.7 32 ............T.C.............T AAGTTTCAAGATAAGTTTAAGAAGATTGGTAG 155102 29 89.7 32 .............TC.............T TCTTCTGGAGTTTTTGAGATGTCCCCTGGCAC 155041 29 96.6 32 ............................T GGTGCATACAGACCAGTAGCCTTGTGCTTACC 154980 29 93.1 32 ..............C.............T AAGGTTTTCGTTGAGGAGCATAAGATGTACCG 154919 29 93.1 0 ..........................A.A | C,TA [154891,154895] ========== ====== ====== ====== ============================= ================================= ================== 17 29 94.7 32 GTTTTTCCCGCACATGCGGGGGTGATCCC # Left flank : GAGAATGAACATACCATTATAGAAATTGGGGCACTTAAGGTTACTCCATCCACTACAGAAGAGTTTAATGCTCTTATCAAATATGACGGAATCTTGCCTACGAAGATTTCTAAATTAACGGGAATTTCTCAGACTCTATTAGAACAAAATGGTCGAAATTTAAAAGAAGTACTTTCCGATTTTTTGCTTTTTATAGGTGAATCAGCTTTAGTTGGCTATGGTATCAATTTTGATGTTAAGTTTATTAACAATGAGCTTAACAAGTTAGGCTTGCCTTTATTATCAAATAAAACTCATGATTTAAAGAAATTTGTAAAGAGTGAAAAGCTATTTCTGGCTAACTATCAATTACAGACAGCCCTTAAGGAATATGGAATTGAGGAGGTAGTTCTTCATAGAGCTTTACAGGACGCTAAGTTAATCTATCAGTTATCAACAAAAGTGAATAAATTTTTGGATAGAATCAATCGGGATTAGCGATTTCAATAGGATCTTTTAGT # Right flank : TAAAATGAGATATAAGAAAAATATCCCTATTGAAAACTGATAAATTAGAGATAGGAGTGTTTTATTATAGGAAAAAAGCATATTTTGTGTAAATGAAGATATCTTAAATAACAAAGGAGAAGACAAGTAAATCGAATGAATTCATCATGGAGACATTTGGTAACAATAACATCAGTTGGGTAAAAAACTTTTAGAAGAGTATAAGGAAATTTGTCTTGTATCTGTTGTCTTAAAGTGTTTCAGAACTAAATGCTCAATATTTTTTGATTGGAAAAACGAGACTAAAATCCTTCTGCCAAATCCCTAGCTCTCCTAGCTGGTGCTAGTGAGACCGAGGTTGCTCCCCTGGTCGAGCGCCTCATCGCAGAGAAAACCTTTAACTTAGAGACAGCCCAGCGCTATCTAGAAAATTTACGATCATAAAAAAACTCAGACGAATTGGTCTGAGTTTTTTGTAGTTAAATACTTTTTCCTGGTAATAATGTAACTGGTAAGAAGTA # Questionable array : NO Score: 5.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCCCGCACATGCGGGGGTGATCCC # Alternate repeat : GTTTTTCCCGCACACGCGGGGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //