Array 1 195608-194523 **** Predicted by CRISPRDetect 2.4 *** >NC_017860.1 Prevotella intermedia 17 chromosome I, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 195607 36 100.0 29 .................................... TAGCGTTTGCGTCTACGTTTTCCATAGCC 195542 36 100.0 29 .................................... ACATCAACTACAAAGCGATAATCTAATAA 195477 36 100.0 30 .................................... TTCTTAATAGTTCTATTCTTGCTCCTGTAT 195411 36 97.2 30 ....T............................... AATTCTTGATATAGTTCTATTATAGTATCT 195345 36 97.2 30 ....T............................... ACCTTAAGGTCCTTTACGCTCTTAGCACCA 195279 36 97.2 30 ....T............................... ACTCTGGCAAGAACAAGTTCGTAACCATAC 195213 36 97.2 30 ....T............................... CAAGAGTACGTTAGCAATGAAAGTAGTAAG 195147 36 97.2 30 ....T............................... ATTACATGTGGTTAACTCATCTAAGAACAA 195081 36 97.2 28 ....T............................... TTATTTGTTTTGTGGCACAATTGACCTA 195017 36 100.0 29 .................................... TTGTTGGCAATGAGCTCGTTCACTTTACC 194952 36 100.0 30 .................................... GATTTTAATTTTTCCTCAATATTTGTTTCT 194886 36 100.0 30 .................................... TCACTCCAATCTTTAACAGTGTGATAATAA 194820 36 100.0 29 .................................... TCCTTAACAATACGTGAAAGTAGATAAAA 194755 36 100.0 29 .................................... CCTATGGTAATGTACTCTTTTAGAACACA 194690 36 100.0 30 .................................... TCAGCGAGAATTTTAGCTTCAAACTCAGCT 194624 36 97.2 30 ................................T... AGCATTCCAATAGCGGAAGGACTGATTTTT 194558 36 94.4 0 ..........................C.C....... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 98.5 30 GTTGCATCTGCCTGCTGTTTGCAAGGTAAAAACAAC # Left flank : TTGAGAATATTGAGCGTGCAAAGTATGAAGCCATACTGAAGGCGCACCAAAGCATTTATAAATTGCTTAGGTTTATTACAGATACGGAAAACGACGACTGCATATTGGTGTGGGAGCAGCCTAAGGGCGGCGGAGAGAAAACTTATTACTTCAGACAAGCCAATATACGTAAGTTTATAAAAGAGCTAACCGAAGAAATATACAACAAGGGCAATGGCATATTTCTATCAAAAAAGGTAATGCCACTGATATTCGAATATAGAAGTCTTGTCTATGGACTGCTGCTTACTGCGAAGGACAAGCCCGACGAGACGATAGAAATAAAGAATGAGAAGCTTGCAAAGAGAATGATAGAAATTCATCAGAGCCTCTCAATACAAATCAGAAAAGATATAAATTTAAAACAACGAGATTTACAATTAGATAATAAGAAGGGGAAAAAATGGTGTTGGAAAAGAAAGAAACAAAACATATAAGAATCAGACAGTTAGGTTAGGTGC # Right flank : TTATTAACAAGCAAGGGAATGGAATTGGGGGAAGTAAAAACGGAAGGGGGAACACGCCTTTCTATGGGTGAAAAAAGGCGAGAAAGGTGTAAATATTTTTCACAAGCGAAACTATTGCGTAACTATCTCGTTATCAGCGCATTGTAAAACCTATTGTTTTGCAATGCGAAAGCGTAGGTTTTACACGGTAAAAGCGGCTCTTTTGCGTTGCAAAAGAGCCGCTTTTGGAATGTAAAATCGAAATTATGGTTTTTCTATGGAATTATCTTTACAAAACAGGAGTGGTTTTACGTCGTGGAAGGTGTAGAGGTTGTGGCGTGGGTTTGGACGGCAGCACAATGGCGGCTTTGCCGATAGTGCGACATTGGAAAGGGTGGTTGGGGCTTCTGCATCGGCTCGATGCGGTGGCTCGTTCGGTTCTGTTGGTTTCGGTTGATGTGCAGCGACGACAGGAAAGCCGCTGTACAGAGCAAGATAAGATGCTTTCTCATATCGTTATC # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCTGCCTGCTGTTTGCAAGGTAAAAACAAC # Alternate repeat : GTTGTATCTGCCTGCTGTTTGCAAGGTAAAAACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 246278-249241 **** Predicted by CRISPRDetect 2.4 *** >NC_017861.1 Prevotella intermedia 17 chromosome II, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 246278 47 100.0 29 ............................................... ATAAAATTTAAAATTATGCAAACTTTTTT 246354 47 100.0 29 ............................................... GGACAACTTCAAAAAGTTATCTTTCAGCG 246430 47 100.0 30 ............................................... CGCCCTATCGTCATTTCAATGCCACCGAGT 246507 47 100.0 29 ............................................... CAAAAGCGGTCGTAAGGGCTTTTATCCCG 246583 47 100.0 29 ............................................... TGGTGCAACCAAGTGGAGCGTATATTGTA 246659 47 100.0 30 ............................................... TATCAAATACAGGCGCATACTCCTTGTACA 246736 47 100.0 30 ............................................... TTTCTTCAAATAATTTCCTGTGCCTACGTT 246813 47 100.0 29 ............................................... TTTTTCGTTTCGTTCACACGTTGATATTC 246889 47 100.0 30 ............................................... CCTGCTCTACTTGTTGTATAGTTTCGTTCT 246966 47 100.0 30 ............................................... AGGAAAGAATAAACAGTGCTTGGAAATAAT 247043 47 100.0 30 ............................................... CGCCTCAACATTGCCAATATCCTCTCTCTA 247120 47 100.0 30 ............................................... CTTAGGTATGTTAGTTAGTGGTGCTGTTGG 247197 47 100.0 29 ............................................... GGCTATGCGCTCGATGCATATAATACTAA 247273 47 100.0 30 ............................................... CACAGACACATCAATAATAGTAACTTTCTC 247350 47 100.0 30 ............................................... GCGGGTGCAGCACTTGCCTACTTATACACA 247427 47 100.0 30 ............................................... TTGAAAATTATTGACATTAAAGGAAAGGGC 247504 47 100.0 30 ............................................... ATTTAATCTAAAAACTTTCATATTTATTTA 247581 47 100.0 30 ............................................... CACGTGTAACGATAGCACAGTTTCCGTCCT 247658 47 100.0 30 ............................................... CTGCCACCGTAACAACGTTTGAGCCATTAA 247735 47 100.0 30 ............................................... AATAAACTGTAATACTTCTTTTAGGTCTAC 247812 47 100.0 30 ............................................... TATACGACCAAATATTGAAGCAGAACCTTA 247889 47 100.0 30 ............................................... TGACGCTATGGGTTACGAACTTACCCCAAT 247966 47 100.0 30 ............................................... GGAAAGATGTTGTTGTATTGCTTGCTGCAG 248043 47 100.0 30 ............................................... CAACAACGTTAAAAAGTGGCAACCCATTTA 248120 47 100.0 30 ............................................... GCCCGTCAAATACTCGGCTTAGCTTATCAA 248197 47 100.0 30 ............................................... CCACTCGAAAAAGGTAGTATCGGACGAAGA 248274 47 100.0 30 ............................................... AAGCTCAAAGCCTTTACAATGCTGCTATTA 248351 47 100.0 30 ............................................... AGGGGATTTAATAATGACATACCACTAGGT 248428 47 100.0 29 ............................................... CGATTGTTTTCTCGTCGCCTTTCACGAGT 248504 47 100.0 30 ............................................... GGAAACATAAAACCTAAATTCATATCCTTT 248581 47 100.0 30 ............................................... TGTCAGCCTTTCCGTATTTGTCCTTTGGCA 248658 47 100.0 30 ............................................... TTCTATTTGGTCTGATAATTTAAATTATGG 248735 47 100.0 30 ............................................... GGTTATTCTCTCGACCCTAATTGTCAGAAT 248812 47 100.0 30 ............................................... ATGCCGAAGATGTAAGTAATGGTAGTGCCA 248889 47 100.0 30 ............................................... TAAAAATTTATATTGAAAAGATATGATAAA 248966 47 100.0 30 ............................................... AAACAGTCTTTGAAAATCTTGTGAAAATGC 249043 47 100.0 29 ............................................... GACTATGGTATCTTCGTTATCGTCTACTT 249119 47 97.9 30 .........A..................................... AACCTCCGAGCACATTACGAAATGCCTACT 249196 46 91.5 0 .........A...............C....C......-......... | ========== ====== ====== ====== =============================================== ============================== ================== 39 47 99.7 30 GTTGTATTTGCCAATGCAAAGATACTAATTTTAAAGCTAATCACAAC # Left flank : AGCAAAGAAGAATGGTTTATCCTGAATTATAAAGCCTATTAGTGAAAGCTTATAGATTTAGTCAATATAGAAGTATGTGGTTAATGGTATTTTTTGATTTACCCACAGATACAAAGAAAGAACGAAAAGCAGCTTCACTCTTTCGTCAAAACTTGCTGAAAGATGGATTTACAATGTTTCAGTTCTCCATTTATATACGCCACTGTGGTAGTAAAGAAAATATGGAAGTACACATTAAAAGAGTTTCCACCTTTATTCCAGCATACGGAAAAGTTGGAATAATGGGCATTACAGACAAACAATTTGAAGAAATAAAGCTATTCTATGGCAAGAAACCACAAAAACCAAATGCACCAGGAGCACAGTTAGAACTCTTTTAATCCTCCTTTTAGAAACAATAAAGTTCCATTCTTGACGAGTGGAACTTTATTTTGCTTGCATTTTTCTTTCTCTCTAAGCTTTCGTAACAATACTGATGTTCATTACTTTAATCTACTTGA # Right flank : CTAACGACACTTCCGATTTATTGTTCTAAAATCAAGTAAATGGGGCAATAAATTTAACACAAGCGAAAAGGGGAAAATAGAGAAAAAGAGAGCTGGAAAATAGGGGTGGAAAAGTAAAAGAGCCGCTTTTGCAATGCAAAACAATAGGTTTTACCGTGCAAAAGCGGCTCTTTTGGATTGCAAGAACGGCTCTTTTGCAGAGCGAAAAGATGATGACGGAGCGCAAAATATAGCCTATATACGAATAAAAGTGTTCGTTTTACAACGTAAAAGGTATAATTTCATTGCACAACACTACCCTATAAGCTTGCAAGAAGCTATGAACAAAGCACTTATGGTAGCACGTAAATAATGGCGTTATTTGCAAATAAATAATTTAAAGTGCAGAAAAGTACCCGTAATTCCGAAGTTGAGGCTCTGAATTTTAACAATCCCGGAGTCGTTTTAACAAATATTCAAACTTTAAGGAATAAAGGTATGCAACCACTGAAAATAAAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTATTTGCCAATGCAAAGATACTAATTTTAAAGCTAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //